Rmu_sc0021726.1_g000002

Biotin--protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021726.1
Physical Location & Seq
Reverse (-)
9433 .. 12693
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021726.1_g000002.1.cds

Sequence Viewer

Length: 1080 bp
atggtctcctcctcctcctccaccttcttcttcttcactagcgcgctggggtttctatctgtacggaactcactgaagaaagccattttctcacgcagaacgagctcggctatttcagctgcctcaggcatggattgcaattcaagctgtacgttggtgctgcgcggcaaatcgcaggcggaaagtaacattgctgaggggctgaagaacagtaacgctctgaagctcagtgacaacggtgagctttcaattctgttagactcggaattgaagaaaccgttcaaggaagacgacgcttttggaatcgactcgttcatgaactctctctccaccgatcggttcggtaggttgctgctttggtcgccgcgcttgccgtcgacgcaggacgtcgtttctcagaatttctgtgagcttccaaacggtgcggtttgtgttgctgatgttcagtacaaagggcgaggcaggtcgaagaatgtgtgggagtctcccaaaggttgcctgctgttttcctttactctgcagatggaggatgggcggatcgtgccactgatacaatatgtggtgtctctagccatcactgaggccataaaggatgtttgtgataggaatggcttgccatatattgatgttagaataaaatggccaaatgatttatatttgaatggcctcaaagttggaggcattttatgcacgtcaacatataagtcgacgaagttcaatgtgtctgctggtatcggcttgaatatcgataatgagaaaccaactacatgcttgaatgcaattcttagagaattgtctactacgacataccagtttagaagagaagagattcttgctgccttctttaacaaatttgagaaattttatgatctttttataaatcaaggatttcaatctctagaggagctatactataagacatggctacacagtgggcagaggattattgtgcaggaaaagaatgatgaccaggtggtggagaacgtggttactgttcagggtttaacatctgcgggatatttgttagctattggtgatgacaatcagatgtgtgaactccatcctgatggaaataggtaa

Protein Analysis

359

Amino Acids

39.98

Weight (kDa)

5.89

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 878
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 976
AccI GTMKAC 3 cut(s) 377, 707, 797
AccII CGCG 3 cut(s) 44, 165, 367
AciI CCGC 6 cut(s) 165, 179, 365, 425, 535, 1013
AclWI GGATC 1 cut(s) 545
AcoI YGGCCR 1 cut(s) 641
AcsI RAATTY 3 cut(s) 400, 851, 860
AcuI CTGAAG 3 cut(s) 95, 224, 242
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 3 cut(s) 63, 151, 449
AfiI CCNNNNNNNGG 2 cut(s) 336, 976
AgsI TTSAA 9 cut(s) 144, 249, 271, 283, 661, 718, 742, 775, 893
AjiI CACGTC 1 cut(s) 693
AjnI CCWGG 1 cut(s) 969
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 8 cut(s) 105, 119, 147, 226, 244, 412, 907, 1028
AluI AGCT 8 cut(s) 105, 119, 147, 226, 244, 412, 907, 1028
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 3 cut(s) 10, 489, 570
AlwI GGATC 1 cut(s) 545
AoxI GGCC 3 cut(s) 582, 641, 664
ApeKI GCWGC 4 cut(s) 119, 160, 352, 836
ApoI RAATTY 3 cut(s) 400, 851, 860
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
Asp700I GAANNNNTTC 2 cut(s) 278, 828
AspLEI GCGC 4 cut(s) 44, 46, 165, 369
AsuHPI GGTGA 2 cut(s) 251, 1046
AxyI CCTNAGG 1 cut(s) 124
BalI TGGCCA 1 cut(s) 643
BanII GRGCYC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 106, 147, 339, 823
BccI CCATC 5 cut(s) 517, 524, 581, 1061, 1068
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 971
BcoDI GTCTC 3 cut(s) 10, 489, 570
BfaI CTAG 3 cut(s) 39, 569, 899
BfmI CTRYAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 453
BisI GCNGC 6 cut(s) 120, 161, 166, 353, 365, 837
BlsI GCNGC 6 cut(s) 121, 162, 167, 354, 366, 838
Bme1390I CCNGG 1 cut(s) 971
BmgBI CACGTC 1 cut(s) 693
BmrFI CCNGG 1 cut(s) 971
BpiI GAAGAC 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 195
Bsa29I ATCGAT 1 cut(s) 747
BsaBI GATNNNNATC 2 cut(s) 892, 1041
BsaHI GRCGYC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 976
Bse1I ACTGG 1 cut(s) 811
Bse21I CCTNAGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 2 cut(s) 892, 1041
BseBI CCWGG 1 cut(s) 971
BseCI ATCGAT 1 cut(s) 747
BseGI GGATG 3 cut(s) 535, 598, 1060
BseJI GATNNNNATC 2 cut(s) 892, 1041
BseLI CCNNNNNNNGG 2 cut(s) 336, 976
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 5 cut(s) 138, 186, 241, 410, 570
BseNI ACTGG 1 cut(s) 811
BsePI GCGCGC 1 cut(s) 42
BseRI GAGGAG 3 cut(s) 4, 7, 917
BseXI GCAGC 4 cut(s) 106, 147, 339, 823
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 971
Bsh1236I CGCG 3 cut(s) 44, 165, 367
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 3 cut(s) 584, 643, 666
BshVI ATCGAT 1 cut(s) 747
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 336, 976
BsmAI GTCTC 3 cut(s) 10, 489, 570
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 3 cut(s) 584, 643, 666
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 334, 537, 868
BspACI CCGC 6 cut(s) 165, 179, 365, 425, 535, 1013
BspANI GGCC 3 cut(s) 584, 643, 666
BspCNI CTCAG 5 cut(s) 137, 187, 240, 409, 571
BspDI ATCGAT 1 cut(s) 747
BspFNI CGCG 3 cut(s) 44, 165, 367
BspHI TCATGA 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 522
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 811
BssHII GCGCGC 1 cut(s) 42
BssMI GATC 3 cut(s) 334, 537, 868
BssNI GRCGYC 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 971
Bst4CI ACNGT 6 cut(s) 212, 239, 279, 422, 932, 994
Bst6I CTCTTC 2 cut(s) 814, 819
BstACI GRCGYC 1 cut(s) 387
BstAPI GCANNNNNTGC 2 cut(s) 135, 687
BstC8I GCNNGC 5 cut(s) 44, 177, 371, 500, 614
BstDEI CTNAG 6 cut(s) 124, 195, 227, 396, 579, 785
BstF5I GGATG 3 cut(s) 535, 598, 1060
BstFNI CGCG 3 cut(s) 44, 165, 367
BstHHI GCGC 4 cut(s) 44, 46, 165, 369
BstKTI GATC 3 cut(s) 337, 540, 871
BstMAI GTCTC 3 cut(s) 10, 489, 570
BstMBI GATC 3 cut(s) 334, 537, 868
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 9 cut(s) 102, 116, 135, 144, 361, 370, 379, 541, 687
BstNI CCWGG 1 cut(s) 971
BstNSI RCATGY 1 cut(s) 771
BstSCI CCNGG 1 cut(s) 969
BstSFI CTRYAG 1 cut(s) 518
BstUI CGCG 3 cut(s) 44, 165, 367
BstV1I GCAGC 4 cut(s) 106, 147, 339, 823
BstV2I GAAGAC 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 1067
Bsu15I ATCGAT 1 cut(s) 747
Bsu36I CCTNAGG 1 cut(s) 124
BsuRI GGCC 3 cut(s) 584, 643, 666
BsuTUI ATCGAT 1 cut(s) 747
BtrI CACGTC 1 cut(s) 693
BtsCI GGATG 3 cut(s) 535, 598, 1060
BtsIMutI CAGTG 5 cut(s) 71, 235, 545, 576, 937
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 5 cut(s) 44, 177, 371, 500, 614
CciI TCATGA 1 cut(s) 315
CfoI GCGC 4 cut(s) 44, 46, 165, 369
ClaI ATCGAT 1 cut(s) 747
CseI GACGC 2 cut(s) 302, 388
CsiI ACCWGGT 1 cut(s) 969
Csp6I GTAC 3 cut(s) 62, 150, 448
CviAII CATG 4 cut(s) 130, 316, 768, 921
CviQI GTAC 3 cut(s) 62, 150, 448
DdeI CTNAG 6 cut(s) 124, 195, 227, 396, 579, 785
DpnI GATC 3 cut(s) 336, 539, 870
DpnII GATC 3 cut(s) 334, 537, 868
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 2 cut(s) 814, 819
EarI CTCTTC 2 cut(s) 814, 819
EciI GGCGGA 2 cut(s) 194, 550
Ecl136II GAGCTC 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 3 cut(s) 95, 224, 242
Eco81I CCTNAGG 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 969
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 4 cut(s) 133, 319, 771, 924
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FatI CATG 4 cut(s) 129, 315, 767, 920
FauI CCCGC 1 cut(s) 1006
FblI GTMKAC 3 cut(s) 377, 707, 797
Fnu4HI GCNGC 6 cut(s) 120, 161, 166, 353, 365, 837
FokI GGATG 3 cut(s) 542, 605, 1047
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 6 cut(s) 120, 161, 166, 353, 365, 837
FspBI CTAG 3 cut(s) 39, 569, 899
GlaI GCGC 4 cut(s) 43, 45, 164, 368
GluI GCNGC 6 cut(s) 120, 161, 166, 353, 365, 837
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 3 cut(s) 584, 643, 666
HgaI GACGC 2 cut(s) 302, 388
HhaI GCGC 4 cut(s) 44, 46, 165, 369
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 4 cut(s) 133, 319, 771, 924
Hin6I GCGC 4 cut(s) 42, 44, 163, 367
HinP1I GCGC 4 cut(s) 42, 44, 163, 367
HincII GTYRAC 3 cut(s) 378, 696, 708
HindII GTYRAC 3 cut(s) 378, 696, 708
HinfI GANTC 5 cut(s) 260, 303, 308, 482, 829
HphI GGTGA 2 cut(s) 251, 1046
Hpy166II GTNNAC 5 cut(s) 378, 696, 708, 798, 1055
Hpy188I TCNGA 4 cut(s) 222, 265, 399, 1047
Hpy188III TCNNGA 3 cut(s) 316, 899, 1064
Hpy8I GTNNAC 5 cut(s) 378, 696, 708, 798, 1055
Hpy99I CGWCG 5 cut(s) 296, 379, 382, 392, 712
HpyAV CCTTC 2 cut(s) 34, 850
HpyCH4III ACNGT 6 cut(s) 212, 239, 279, 422, 932, 994
HpyCH4IV ACGT 4 cut(s) 152, 387, 692, 984
HpyCH4V TGCA 5 cut(s) 138, 520, 690, 779, 952
HpyF10VI GCNNNNNNNGC 9 cut(s) 102, 116, 135, 144, 361, 370, 379, 541, 687
HpyF3I CTNAG 6 cut(s) 124, 195, 227, 396, 579, 785
HpySE526I ACGT 4 cut(s) 152, 387, 692, 984
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 4 cut(s) 133, 319, 771, 924
HspAI GCGC 4 cut(s) 42, 44, 163, 367
Kzo9I GATC 3 cut(s) 334, 537, 868
LmnI GCTCC 1 cut(s) 904
Lsp1109I GCAGC 4 cut(s) 106, 147, 339, 823
MabI ACCWGGT 1 cut(s) 969
MaeI CTAG 3 cut(s) 39, 569, 899
MaeII ACGT 4 cut(s) 152, 387, 692, 984
MaeIII GTNAC 4 cut(s) 185, 212, 230, 988
MalI GATC 3 cut(s) 336, 539, 870
MboI GATC 3 cut(s) 334, 537, 868
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 643
MluCI AATT 8 cut(s) 139, 249, 266, 400, 780, 791, 851, 860
MluNI TGGCCA 1 cut(s) 643
MlyI GAGTC 3 cut(s) 254, 302, 491
MmeI TCCRAC 1 cut(s) 655
Mox20I TGGCCA 1 cut(s) 643
MroXI GAANNNNTTC 2 cut(s) 278, 828
MscI TGGCCA 1 cut(s) 643
MseI TTAA 2 cut(s) 846, 1004
MslI CAYNNNNRTG 1 cut(s) 1065
Msp20I TGGCCA 1 cut(s) 643
MspA1I CMGCKG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 971
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 1 cut(s) 971
MvnI CGCG 3 cut(s) 44, 165, 367
MwoI GCNNNNNNNGC 9 cut(s) 102, 116, 135, 144, 361, 370, 379, 541, 687
NdeII GATC 3 cut(s) 334, 537, 868
NlaIII CATG 4 cut(s) 133, 319, 771, 924
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 771
PagI TCATGA 1 cut(s) 315
PauI GCGCGC 1 cut(s) 42
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 2 cut(s) 278, 828
PfeI GAWTC 2 cut(s) 303, 829
PflMI CCANNNNNTGG 1 cut(s) 976
PkrI GCNGC 6 cut(s) 121, 162, 167, 354, 366, 838
Ple19I CGATCG 1 cut(s) 337
PleI GAGTC 3 cut(s) 254, 302, 490
PpsI GAGTC 3 cut(s) 254, 302, 490
PsiI TTATAA 1 cut(s) 878
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 969
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 969
PstI CTGCAG 1 cut(s) 522
PteI GCGCGC 1 cut(s) 42
PvuI CGATCG 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 63, 151, 449
RsaNI GTAC 3 cut(s) 62, 150, 448
RseI CAYNNNNRTG 1 cut(s) 1065
SacI GAGCTC 1 cut(s) 107
SalI GTCGAC 2 cut(s) 376, 706
SaqAI TTAA 2 cut(s) 846, 1004
SatI GCNGC 6 cut(s) 120, 161, 166, 353, 365, 837
Sau3AI GATC 3 cut(s) 334, 537, 868
SchI GAGTC 3 cut(s) 254, 302, 491
ScrFI CCNGG 1 cut(s) 971
SduI GDGCHC 1 cut(s) 107
SexAI ACCWGGT 1 cut(s) 969
SfcI CTRYAG 1 cut(s) 518
SgrDI CGTCGACG 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 1065
Sse9I AATT 8 cut(s) 139, 249, 266, 400, 780, 791, 851, 860
SsiI CCGC 6 cut(s) 165, 179, 365, 425, 535, 1013
SspMI CTAG 3 cut(s) 39, 569, 899
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 969
TaaI ACNGT 6 cut(s) 212, 239, 279, 422, 932, 994
TaiI ACGT 4 cut(s) 155, 390, 695, 987
TaqI TCGA 5 cut(s) 306, 377, 467, 707, 747
TasI AATT 8 cut(s) 139, 249, 266, 400, 780, 791, 851, 860
TatI WGTACW 1 cut(s) 447
TauI GCSGC 2 cut(s) 168, 367
TfiI GAWTC 2 cut(s) 303, 829
Tru1I TTAA 2 cut(s) 846, 1004
Tru9I TTAA 2 cut(s) 846, 1004
TscAI CASTG 5 cut(s) 78, 235, 552, 583, 937
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 4 cut(s) 119, 160, 352, 836
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 304, 332
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 5 cut(s) 78, 235, 552, 583, 937
Van91I CCANNNNNTGG 1 cut(s) 976
XapI RAATTY 3 cut(s) 400, 851, 860
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 1 cut(s) 771
XmiI GTMKAC 3 cut(s) 377, 707, 797
XmnI GAANNNNTTC 2 cut(s) 278, 828
XspI CTAG 3 cut(s) 39, 569, 899
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.