pycom15g31890

Biotin--protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
30628202 .. 30634477
6276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31890.3

Sequence Viewer

Length: 1107 bp
ATGTCCTTCGCCTCCACCACCTCGCTAGGGTTTTCCACCGTACAAAGCTCACTGAGGAACGCCGTTCTCTCGAAGAAGTCAAATTTCAGTCTCCCTCTACCCGCCGCCGCCGCATTAGCCATGGACTGCGACCCGAATTGTACGCTGGTTTTGTGCGGGAAATCGCCGGCGGAGAATGAAGCTGCCAAGGCGCTGAAGAACAGCAACGCGCTGAACCTCCCTGAGAGCACCGAGTTTTCGATTTTCTTACAATCGGAATCAGAAAAGCCGGTCAAGGAAGACGCTTTTGGAGTCGATTCGTTCATGAGCTCGCTATCTACCAGTCGGTTCGGCAGGTTCCTCCTCTGGTCTCCTCGCCTGCCTTCCACACACGACGTCGTTTCTAAGAATTTCTGTGAGCTGCCGGTCGGTGCTGTTTGTGTAGCTGATGTTCAGTACAAAGGGAGAGGGCGGTCGAAGAATGTGTGGGAATCTCCCGAGGGTTGCCTTCTGTTCTCCTTTACATTGCAAATGGAGGATGGCCGAGTCGTCCCTCTTATACAGTACGTGGTTTCTCTTGCTGTCACAGAGGCGATAAAAGATGTTTGTGATAAAAATGGCTTGCCATATGTTGATCTTAAAATAAAATGGCCAACTGATCTTTATTTAAATGGCCTAAAAGTGGGAGGTATTTTATGCACCTCAACATATAAGTCGAAGCAGTTCAATGTCTCTGCTGGTATAGGTTTGAACGTTGATAATGAGAAGCCAACTACATGTTTGAATGCATTTCTTAGAGAATTGTCGGTTACAACGTACAAATTTAGAAGAGAAGATGTTCTTGCCGCCTTCTTTAACAAATTTGAGATGTTATATGAAGTTTTTATAAATCAAGGATTCCAATCTCTTGAGGAGGTATACTATAGGACTTGGTTACACAGCGGACAGAGAGTTATTGTGCAAGAAAAGAGAGAGGATCAAGTGGTGGAAAATGTGGTCACTATTCAGGGTTTGACCTCATCAGGATATTTGTTAGCTATTGGTGATGACAATCAGATGTGTGAACTTCATCCTGATGGAAATAGTTTTGACTTCTTCAAAGGATTAGTCAGACGAAAACTTGACTGA

Protein Analysis

369

Amino Acids

40.89

Weight (kDa)

5.63

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
AatII GACGTC 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 897
AccII CGCG 1 cut(s) 209
AciI CCGC 9 cut(s) 102, 105, 108, 111, 156, 170, 451, 825, 921
AclI AACGTT 1 cut(s) 732
AclWI GGATC 1 cut(s) 963
AcoI YGGCCR 2 cut(s) 520, 629
AcsI RAATTY 4 cut(s) 82, 388, 800, 839
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 5 cut(s) 42, 142, 437, 545, 797
AfiI CCNNNNNNNGG 2 cut(s) 27, 661
AflIII ACRYGT 1 cut(s) 755
AgsI TTSAA 4 cut(s) 706, 730, 763, 1078
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 6 cut(s) 48, 182, 309, 400, 425, 1016
AluI AGCT 6 cut(s) 48, 182, 309, 400, 425, 1016
Alw21I GWGCWC 2 cut(s) 230, 311
Alw26I GTCTC 3 cut(s) 95, 354, 715
AlwI GGATC 1 cut(s) 963
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 3 cut(s) 520, 629, 652
ApeKI GCWGC 2 cut(s) 182, 400
ApoI RAATTY 4 cut(s) 82, 388, 800, 839
ArsI GACNNNNNNTTYG 2 cut(s) 1071, 1103
Asp700I GAANNNNTTC 2 cut(s) 701, 816
AspLEI GCGC 2 cut(s) 193, 211
AsuHPI GGTGA 1 cut(s) 1034
AvaI CYCGRG 1 cut(s) 476
BalI TGGCCA 1 cut(s) 631
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 230, 311
BbvI GCAGC 2 cut(s) 169, 387
BccI CCATC 2 cut(s) 512, 1049
BceAI ACGGC 1 cut(s) 47
BcoDI GTCTC 3 cut(s) 95, 354, 715
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 901
BfoI RGCGCY 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 6 cut(s) 105, 108, 111, 183, 401, 825
BlsI GCNGC 6 cut(s) 106, 109, 112, 184, 402, 826
BmeT110I CYCGRG 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 908
BsaAI YACGTR 1 cut(s) 547
BsaBI GATNNNNATC 2 cut(s) 880, 1029
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 120, 186, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 661
Bse118I RCCGGY 3 cut(s) 166, 268, 403
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 503
Bse8I GATNNNNATC 2 cut(s) 880, 1029
BseDI CCNNGG 3 cut(s) 120, 186, 477
BseGI GGATG 2 cut(s) 523, 1048
BseJI GATNNNNATC 2 cut(s) 880, 1029
BseLI CCNNNNNNNGG 2 cut(s) 27, 661
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 2 cut(s) 44, 213
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 3 cut(s) 332, 342, 905
BseXI GCAGC 2 cut(s) 169, 387
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 2 cut(s) 408, 455
BshFI GGCC 3 cut(s) 522, 631, 654
BsiEI CGRYCG 2 cut(s) 408, 455
BsiHKAI GWGCWC 2 cut(s) 230, 311
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 3 cut(s) 167, 269, 404
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 27, 661
BsmAI GTCTC 3 cut(s) 95, 354, 715
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 3 cut(s) 522, 631, 654
Bso31I GGTCTC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 230, 311
Bsp143I GATC 3 cut(s) 613, 637, 955
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 9 cut(s) 102, 105, 108, 111, 156, 170, 451, 825, 921
BspANI GGCC 3 cut(s) 522, 631, 654
BspCNI CTCAG 2 cut(s) 45, 214
BspFNI CGCG 1 cut(s) 209
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 1 cut(s) 963
BspTNI GGTCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 503
BsrFI RCCGGY 3 cut(s) 166, 268, 403
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 3 cut(s) 166, 268, 403
BssECI CCNNGG 3 cut(s) 120, 186, 477
BssMI GATC 3 cut(s) 613, 637, 955
BssNAI GTATAC 1 cut(s) 898
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 120, 186
Bst1107I GTATAC 1 cut(s) 898
Bst4CI ACNGT 2 cut(s) 40, 543
Bst6I CTCTTC 1 cut(s) 802
BstACI GRCGYC 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 4 cut(s) 168, 311, 359, 602
BstDEI CTNAG 4 cut(s) 53, 222, 384, 773
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 523, 1048
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 2 cut(s) 193, 211
BstKTI GATC 3 cut(s) 616, 640, 958
BstMAI GTCTC 3 cut(s) 95, 354, 715
BstMBI GATC 3 cut(s) 613, 637, 955
BstMCI CGRYCG 2 cut(s) 408, 455
BstMWI GCNNNNNNNGC 3 cut(s) 110, 116, 188
BstNSI RCATGY 1 cut(s) 759
BstSFI CTRYAG 1 cut(s) 901
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 169, 387
BstV2I GAAGAC 1 cut(s) 285
BstZ17I GTATAC 1 cut(s) 898
BsuRI GGCC 3 cut(s) 522, 631, 654
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 523, 1048
BtsIMutI CAGTG 1 cut(s) 50
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 4 cut(s) 168, 311, 359, 602
CciI TCATGA 1 cut(s) 303
CfoI GCGC 2 cut(s) 193, 211
Cfr10I RCCGGY 3 cut(s) 166, 268, 403
CseI GACGC 1 cut(s) 290
Csp6I GTAC 5 cut(s) 41, 141, 436, 544, 796
CviAII CATG 3 cut(s) 121, 304, 756
CviQI GTAC 5 cut(s) 41, 141, 436, 544, 796
DdeI CTNAG 4 cut(s) 53, 222, 384, 773
DpnI GATC 3 cut(s) 615, 639, 957
DpnII GATC 3 cut(s) 613, 637, 955
DraI TTTAAA 1 cut(s) 648
EaeI YGGCCR 2 cut(s) 520, 629
Eam1104I CTCTTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 802
EciI GGCGGA 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 120, 186
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 120, 186
EcoT22I ATGCAT 1 cut(s) 769
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 2 cut(s) 120, 186
FaeI CATG 3 cut(s) 124, 307, 759
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 120, 303, 755
FauI CCCGC 2 cut(s) 109, 149
FauNDI CATATG 1 cut(s) 607
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 6 cut(s) 105, 108, 111, 183, 401, 825
FokI GGATG 2 cut(s) 530, 1035
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 6 cut(s) 105, 108, 111, 183, 401, 825
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 192, 210
GluI GCNGC 6 cut(s) 105, 108, 111, 183, 401, 825
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 3 cut(s) 522, 631, 654
HapII CCGG 3 cut(s) 167, 269, 404
HgaI GACGC 1 cut(s) 290
HhaI GCGC 2 cut(s) 193, 211
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 3 cut(s) 124, 307, 759
Hin6I GCGC 2 cut(s) 191, 209
HinP1I GCGC 2 cut(s) 191, 209
HinfI GANTC 6 cut(s) 257, 291, 296, 470, 525, 876
HpaII CCGG 3 cut(s) 167, 269, 404
HphI GGTGA 1 cut(s) 1034
Hpy166II GTNNAC 2 cut(s) 898, 1043
Hpy188I TCNGA 4 cut(s) 256, 262, 1035, 1091
Hpy188III TCNNGA 6 cut(s) 70, 304, 476, 887, 1002, 1052
Hpy8I GTNNAC 2 cut(s) 898, 1043
Hpy99I CGWCG 2 cut(s) 377, 380
HpyAV CCTTC 4 cut(s) 16, 372, 497, 838
HpyCH4III ACNGT 2 cut(s) 40, 543
HpyCH4IV ACGT 4 cut(s) 375, 546, 732, 794
HpyCH4V TGCA 4 cut(s) 508, 678, 767, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 116, 188
HpyF3I CTNAG 4 cut(s) 53, 222, 384, 773
HpySE526I ACGT 4 cut(s) 375, 546, 732, 794
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 3 cut(s) 124, 307, 759
HspAI GCGC 2 cut(s) 191, 209
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Kzo9I GATC 3 cut(s) 613, 637, 955
Lsp1109I GCAGC 2 cut(s) 169, 387
MaeI CTAG 1 cut(s) 26
MaeII ACGT 4 cut(s) 375, 546, 732, 794
MaeIII GTNAC 4 cut(s) 562, 787, 912, 976
MalI GATC 3 cut(s) 615, 639, 957
MboI GATC 3 cut(s) 613, 637, 955
MboII GAAGA 7 cut(s) 85, 208, 290, 469, 819, 824, 1066
MhlI GDGCHC 2 cut(s) 230, 311
MlsI TGGCCA 1 cut(s) 631
MluCI AATT 6 cut(s) 82, 136, 388, 779, 800, 839
MluNI TGGCCA 1 cut(s) 631
MlyI GAGTC 2 cut(s) 300, 534
Mox20I TGGCCA 1 cut(s) 631
Mph1103I ATGCAT 1 cut(s) 769
MreI CGCCGGCG 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 166
MroXI GAANNNNTTC 2 cut(s) 701, 816
MscI TGGCCA 1 cut(s) 631
MseI TTAA 3 cut(s) 618, 647, 834
MslI CAYNNNNRTG 1 cut(s) 1053
Msp20I TGGCCA 1 cut(s) 631
MspA1I CMGCKG 1 cut(s) 921
MspI CCGG 3 cut(s) 167, 269, 404
Mva1269I GAATGC 1 cut(s) 769
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 110, 116, 188
NaeI GCCGGC 1 cut(s) 168
NcoI CCATGG 1 cut(s) 120
NdeI CATATG 1 cut(s) 607
NdeII GATC 3 cut(s) 613, 637, 955
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 3 cut(s) 124, 307, 759
NlaIV GGNNCC 1 cut(s) 338
NmeAIII GCCGAG 1 cut(s) 548
NmuCI GTSAC 2 cut(s) 562, 976
NsiI ATGCAT 1 cut(s) 769
NspI RCATGY 1 cut(s) 759
PagI TCATGA 1 cut(s) 303
PciI ACATGT 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 791
PctI GAATGC 1 cut(s) 769
PdiI GCCGGC 1 cut(s) 168
PdmI GAANNNNTTC 2 cut(s) 701, 816
PfeI GAWTC 4 cut(s) 257, 296, 470, 876
PkrI GCNGC 6 cut(s) 106, 109, 112, 184, 402, 826
PleI GAGTC 2 cut(s) 299, 533
PpsI GAGTC 2 cut(s) 299, 533
Ppu21I YACGTR 1 cut(s) 547
PscI ACATGT 1 cut(s) 755
PsiI TTATAA 1 cut(s) 866
Psp124BI GAGCTC 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 732
PspN4I GGNNCC 1 cut(s) 338
PsrI GAACNNNNNNTAC 2 cut(s) 414, 446
RsaI GTAC 5 cut(s) 42, 142, 437, 545, 797
RsaNI GTAC 5 cut(s) 41, 141, 436, 544, 796
RseI CAYNNNNRTG 1 cut(s) 1053
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 3 cut(s) 618, 647, 834
SatI GCNGC 6 cut(s) 105, 108, 111, 183, 401, 825
Sau3AI GATC 3 cut(s) 613, 637, 955
SchI GAGTC 2 cut(s) 300, 534
SduI GDGCHC 2 cut(s) 230, 311
SfcI CTRYAG 1 cut(s) 901
SgrAI CRCCGGYG 1 cut(s) 166
SmiI ATTTAAAT 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 1053
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 6 cut(s) 82, 136, 388, 779, 800, 839
SsiI CCGC 9 cut(s) 102, 105, 108, 111, 156, 170, 451, 825, 921
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 311
StyI CCWWGG 2 cut(s) 120, 186
SwaI ATTTAAAT 1 cut(s) 648
TaaI ACNGT 2 cut(s) 40, 543
TaiI ACGT 4 cut(s) 378, 549, 735, 797
TaqI TCGA 5 cut(s) 71, 239, 294, 455, 695
TasI AATT 6 cut(s) 82, 136, 388, 779, 800, 839
TatI WGTACW 1 cut(s) 435
TauI GCSGC 4 cut(s) 107, 110, 113, 827
TfiI GAWTC 4 cut(s) 257, 296, 470, 876
Tru1I TTAA 3 cut(s) 618, 647, 834
Tru9I TTAA 3 cut(s) 618, 647, 834
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 2 cut(s) 562, 976
TseI GCWGC 2 cut(s) 182, 400
Tsp45I GTSAC 2 cut(s) 562, 976
TspDTI ATGAA 4 cut(s) 192, 292, 870, 1037
TspRI CASTG 1 cut(s) 57
XapI RAATTY 4 cut(s) 82, 388, 800, 839
XceI RCATGY 1 cut(s) 759
XmiI GTMKAC 1 cut(s) 897
XmnI GAANNNNTTC 2 cut(s) 701, 816
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 376
Zsp2I ATGCAT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.