RchiOBHm_Chr6g0294871

Biotin--protein ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
57057461 .. 57063207
5747 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26465

Sequence Viewer

Length: 1113 bp
ATGGTCTCCTCCTCCTCCACCTTCTTCTTCACTAGCGCGCTGGGGTTTTTTTCTGTACGGAACTCACTGAAGAAAGCAATTTTCTCACGCAGAACGAGCTCGGCTATTTCAGCCGCCTCAGGCATGGATTGCAATTCAAGCTGTACGTTGGTGCTGCGCGGCAAATCGCCGGCGGAAAGTCAAATTGCTGAGGGGCTGAAGAACAGTAACGCTCTGAAGCTCAGTGACAACTGTGAGCTTTCAATTCTGTTAGACTCGGAATTGAAGAAACCGTTCAAGGAAGACGACGCTTTTGGAATCGACTCGTTCATGAACTCTCTCTCCACCGATCGGTTCGGTAGGTTGCTGCTTTGGTCGCCGCGCTTGCCGTCGACGCAGGACGTCGTTTCTCAGAATTTCTGTGAGCTTCCAAACGGTGCGGTTTGTGTTGCTGATGTTCAGTACAAAGGGCGAGGCCGGTCGAAGAATGTGTGGGAGTCTCCCAAAGGTTGCCTGCTGTTTTCCTTTACTCTGCAGATGGAGGATGGGCGGATCGTGCCACTGATACAATATGTGGTGTCTCTAGCCATCACTGAGGCCATAAAGGATGTTTGTGATAGGAATGGCTTGCCATATATTGATGTTAGAATAAAATGGCCAAATGATCTATATTTGAATGGCCTCAAAGTTGGAGGCATTTTATGCACGTCAACATATAAGTCGACGAAGTTCAATGTGTCTGCTGGTATCGGCTTGAATATCGATAATGAGAAACCAACTACATGCTTGAATGCAATTCTTAGAGAATTGTCTGCTACGACATACCAGTTTAGAAGAGAAGAGATTCTTGCTGCCTTCTTTAACAAATTTGAGAAATTTTATGATCTTTTTATAAATCAAGGATTTCAACCTCTAGAGGAGCTATACTATAAGACATGGCTACACAGTGGGCAGAGGATTATTGTGCAGGAAAAGAATGACGACCAGGTGGTGGAGAACGTGGTTACTGTTCAGGGTTTAACATCTGCGGGATATTTGTTAGCTATTGGTGATGACAATCAGATGTGTGAACTCCATCCTGATGGAAATAGTTTTGACTTCTTCAAGGGATTAGTCAGACAAAAACTTCACTAA

Protein Analysis

370

Amino Acids

41.34

Weight (kDa)

6.36

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPL_LplA_LipB PF03099 119 - 246 3e-34 Biotin/lipoate A/B protein ligase family
BPL_C PF02237 308 - 363 2e-06 Biotin protein ligase C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 872
AatII GACGTC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 970
AccI GTMKAC 2 cut(s) 371, 701
AccII CGCG 3 cut(s) 38, 159, 361
AciI CCGC 7 cut(s) 114, 159, 173, 359, 419, 529, 1007
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 1 cut(s) 635
AcsI RAATTY 3 cut(s) 394, 845, 854
AcuI CTGAAG 3 cut(s) 89, 218, 236
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 3 cut(s) 57, 145, 443
AfiI CCNNNNNNNGG 2 cut(s) 330, 970
AjiI CACGTC 1 cut(s) 687
AjnI CCWGG 1 cut(s) 963
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 7 cut(s) 99, 141, 220, 238, 406, 901, 1022
AluI AGCT 7 cut(s) 99, 141, 220, 238, 406, 901, 1022
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 3 cut(s) 10, 483, 564
AlwI GGATC 1 cut(s) 539
AoxI GGCC 4 cut(s) 454, 576, 635, 658
ApeKI GCWGC 3 cut(s) 154, 346, 830
ApoI RAATTY 3 cut(s) 394, 845, 854
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp700I GAANNNNTTC 2 cut(s) 272, 822
AspLEI GCGC 4 cut(s) 38, 40, 159, 363
AsuHPI GGTGA 1 cut(s) 1040
AxyI CCTNAGG 1 cut(s) 118
BalI TGGCCA 1 cut(s) 637
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 141, 333, 817
BccI CCATC 5 cut(s) 511, 518, 575, 1055, 1062
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 965
BcoDI GTCTC 3 cut(s) 10, 483, 564
BfaI CTAG 3 cut(s) 33, 563, 893
BfmI CTRYAG 1 cut(s) 512
BisI GCNGC 6 cut(s) 114, 155, 160, 347, 359, 831
BlsI GCNGC 6 cut(s) 115, 156, 161, 348, 360, 832
Bme1390I CCNGG 1 cut(s) 965
BmgBI CACGTC 1 cut(s) 687
BmrFI CCNGG 1 cut(s) 965
BpiI GAAGAC 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 1035
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 970
Bse118I RCCGGY 2 cut(s) 169, 456
Bse1I ACTGG 1 cut(s) 805
Bse21I CCTNAGG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 1035
BseBI CCWGG 1 cut(s) 965
BseCI ATCGAT 1 cut(s) 741
BseGI GGATG 3 cut(s) 529, 592, 1054
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 2 cut(s) 330, 970
BseMII CTCAG 5 cut(s) 132, 180, 235, 404, 564
BseNI ACTGG 1 cut(s) 805
BsePI GCGCGC 1 cut(s) 36
BseRI GAGGAG 2 cut(s) 4, 911
BseXI GCAGC 3 cut(s) 141, 333, 817
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 965
Bsh1236I CGCG 3 cut(s) 38, 159, 361
Bsh1285I CGRYCG 2 cut(s) 331, 461
BshFI GGCC 4 cut(s) 456, 578, 637, 660
BshVI ATCGAT 1 cut(s) 741
BsiEI CGRYCG 2 cut(s) 331, 461
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 170, 457
BslI CCNNNNNNNGG 2 cut(s) 330, 970
BsmAI GTCTC 3 cut(s) 10, 483, 564
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 4 cut(s) 456, 578, 637, 660
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 4 cut(s) 328, 531, 643, 862
BspACI CCGC 7 cut(s) 114, 159, 173, 359, 419, 529, 1007
BspANI GGCC 4 cut(s) 456, 578, 637, 660
BspCNI CTCAG 5 cut(s) 131, 181, 234, 403, 565
BspDI ATCGAT 1 cut(s) 741
BspFNI CGCG 3 cut(s) 38, 159, 361
BspHI TCATGA 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 516
BspPI GGATC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 169, 456
BsrI ACTGG 1 cut(s) 805
BssAI RCCGGY 2 cut(s) 169, 456
BssHII GCGCGC 1 cut(s) 36
BssMI GATC 4 cut(s) 328, 531, 643, 862
BssNI GRCGYC 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 965
Bst4CI ACNGT 6 cut(s) 206, 233, 273, 416, 926, 988
Bst6I CTCTTC 2 cut(s) 808, 813
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 2 cut(s) 129, 681
BstC8I GCNNGC 5 cut(s) 38, 171, 365, 494, 608
BstDEI CTNAG 6 cut(s) 118, 189, 221, 390, 573, 779
BstF5I GGATG 3 cut(s) 529, 592, 1054
BstFNI CGCG 3 cut(s) 38, 159, 361
BstHHI GCGC 4 cut(s) 38, 40, 159, 363
BstKTI GATC 4 cut(s) 331, 534, 646, 865
BstMAI GTCTC 3 cut(s) 10, 483, 564
BstMBI GATC 4 cut(s) 328, 531, 643, 862
BstMCI CGRYCG 2 cut(s) 331, 461
BstMWI GCNNNNNNNGC 9 cut(s) 96, 110, 129, 138, 355, 364, 373, 535, 681
BstNI CCWGG 1 cut(s) 965
BstNSI RCATGY 1 cut(s) 765
BstSCI CCNGG 1 cut(s) 963
BstSFI CTRYAG 1 cut(s) 512
BstUI CGCG 3 cut(s) 38, 159, 361
BstV1I GCAGC 3 cut(s) 141, 333, 817
BstV2I GAAGAC 1 cut(s) 288
BstXI CCANNNNNNTGG 1 cut(s) 1061
Bsu15I ATCGAT 1 cut(s) 741
Bsu36I CCTNAGG 1 cut(s) 118
BsuRI GGCC 4 cut(s) 456, 578, 637, 660
BsuTUI ATCGAT 1 cut(s) 741
BtrI CACGTC 1 cut(s) 687
BtsCI GGATG 3 cut(s) 529, 592, 1054
BtsIMutI CAGTG 5 cut(s) 65, 229, 539, 570, 931
Cac8I GCNNGC 5 cut(s) 38, 171, 365, 494, 608
CciI TCATGA 1 cut(s) 309
CfoI GCGC 4 cut(s) 38, 40, 159, 363
Cfr10I RCCGGY 2 cut(s) 169, 456
ClaI ATCGAT 1 cut(s) 741
CseI GACGC 2 cut(s) 296, 382
CsiI ACCWGGT 1 cut(s) 963
Csp6I GTAC 3 cut(s) 56, 144, 442
CviAII CATG 4 cut(s) 124, 310, 762, 915
CviQI GTAC 3 cut(s) 56, 144, 442
DdeI CTNAG 6 cut(s) 118, 189, 221, 390, 573, 779
DpnI GATC 4 cut(s) 330, 533, 645, 864
DpnII GATC 4 cut(s) 328, 531, 643, 862
EaeI YGGCCR 1 cut(s) 635
Eam1104I CTCTTC 2 cut(s) 808, 813
EarI CTCTTC 2 cut(s) 808, 813
EciI GGCGGA 2 cut(s) 188, 544
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 3 cut(s) 89, 218, 236
Eco81I CCTNAGG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 963
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 4 cut(s) 127, 313, 765, 918
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FatI CATG 4 cut(s) 123, 309, 761, 914
FauI CCCGC 1 cut(s) 1000
FblI GTMKAC 2 cut(s) 371, 701
Fnu4HI GCNGC 6 cut(s) 114, 155, 160, 347, 359, 831
FokI GGATG 3 cut(s) 536, 599, 1041
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 6 cut(s) 114, 155, 160, 347, 359, 831
FspBI CTAG 3 cut(s) 33, 563, 893
GlaI GCGC 4 cut(s) 37, 39, 158, 362
GluI GCNGC 6 cut(s) 114, 155, 160, 347, 359, 831
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 4 cut(s) 456, 578, 637, 660
HapII CCGG 2 cut(s) 170, 457
HgaI GACGC 2 cut(s) 296, 382
HhaI GCGC 4 cut(s) 38, 40, 159, 363
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 4 cut(s) 127, 313, 765, 918
Hin6I GCGC 4 cut(s) 36, 38, 157, 361
HinP1I GCGC 4 cut(s) 36, 38, 157, 361
HincII GTYRAC 3 cut(s) 372, 690, 702
HindII GTYRAC 3 cut(s) 372, 690, 702
HinfI GANTC 5 cut(s) 254, 297, 302, 476, 823
HpaII CCGG 2 cut(s) 170, 457
HphI GGTGA 1 cut(s) 1040
Hpy166II GTNNAC 4 cut(s) 372, 690, 702, 1049
Hpy188I TCNGA 5 cut(s) 216, 259, 393, 1041, 1097
Hpy188III TCNNGA 3 cut(s) 310, 893, 1058
Hpy8I GTNNAC 4 cut(s) 372, 690, 702, 1049
Hpy99I CGWCG 5 cut(s) 290, 373, 376, 386, 706
HpyAV CCTTC 2 cut(s) 31, 844
HpyCH4III ACNGT 6 cut(s) 206, 233, 273, 416, 926, 988
HpyCH4IV ACGT 4 cut(s) 146, 381, 686, 978
HpyCH4V TGCA 5 cut(s) 132, 514, 684, 773, 946
HpyF10VI GCNNNNNNNGC 9 cut(s) 96, 110, 129, 138, 355, 364, 373, 535, 681
HpyF3I CTNAG 6 cut(s) 118, 189, 221, 390, 573, 779
HpySE526I ACGT 4 cut(s) 146, 381, 686, 978
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 4 cut(s) 127, 313, 765, 918
HspAI GCGC 4 cut(s) 36, 38, 157, 361
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
Kzo9I GATC 4 cut(s) 328, 531, 643, 862
LmnI GCTCC 1 cut(s) 898
Lsp1109I GCAGC 3 cut(s) 141, 333, 817
MabI ACCWGGT 1 cut(s) 963
MaeI CTAG 3 cut(s) 33, 563, 893
MaeII ACGT 4 cut(s) 146, 381, 686, 978
MaeIII GTNAC 3 cut(s) 206, 224, 982
MalI GATC 4 cut(s) 330, 533, 645, 864
MboI GATC 4 cut(s) 328, 531, 643, 862
MhlI GDGCHC 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 637
MluNI TGGCCA 1 cut(s) 637
MlyI GAGTC 3 cut(s) 248, 296, 485
MmeI TCCRAC 1 cut(s) 649
Mox20I TGGCCA 1 cut(s) 637
MreI CGCCGGCG 1 cut(s) 169
MroNI GCCGGC 1 cut(s) 169
MroXI GAANNNNTTC 2 cut(s) 272, 822
MscI TGGCCA 1 cut(s) 637
MseI TTAA 2 cut(s) 840, 998
MslI CAYNNNNRTG 1 cut(s) 1059
Msp20I TGGCCA 1 cut(s) 637
MspI CCGG 2 cut(s) 170, 457
MspR9I CCNGG 1 cut(s) 965
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 1 cut(s) 965
MvnI CGCG 3 cut(s) 38, 159, 361
MwoI GCNNNNNNNGC 9 cut(s) 96, 110, 129, 138, 355, 364, 373, 535, 681
NaeI GCCGGC 1 cut(s) 171
NdeII GATC 4 cut(s) 328, 531, 643, 862
NgoMIV GCCGGC 1 cut(s) 169
NlaIII CATG 4 cut(s) 127, 313, 765, 918
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 1 cut(s) 765
PagI TCATGA 1 cut(s) 309
PauI GCGCGC 1 cut(s) 36
PctI GAATGC 1 cut(s) 775
PdiI GCCGGC 1 cut(s) 171
PdmI GAANNNNTTC 2 cut(s) 272, 822
PfeI GAWTC 2 cut(s) 297, 823
PflMI CCANNNNNTGG 1 cut(s) 970
PkrI GCNGC 6 cut(s) 115, 156, 161, 348, 360, 832
Ple19I CGATCG 1 cut(s) 331
PleI GAGTC 3 cut(s) 248, 296, 484
PpsI GAGTC 3 cut(s) 248, 296, 484
PsiI TTATAA 1 cut(s) 872
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 963
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 963
PstI CTGCAG 1 cut(s) 516
PteI GCGCGC 1 cut(s) 36
PvuI CGATCG 1 cut(s) 331
RsaI GTAC 3 cut(s) 57, 145, 443
RsaNI GTAC 3 cut(s) 56, 144, 442
RseI CAYNNNNRTG 1 cut(s) 1059
SacI GAGCTC 1 cut(s) 101
SalI GTCGAC 2 cut(s) 370, 700
SaqAI TTAA 2 cut(s) 840, 998
SatI GCNGC 6 cut(s) 114, 155, 160, 347, 359, 831
Sau3AI GATC 4 cut(s) 328, 531, 643, 862
SchI GAGTC 3 cut(s) 248, 296, 485
ScrFI CCNGG 1 cut(s) 965
SduI GDGCHC 1 cut(s) 101
SexAI ACCWGGT 1 cut(s) 963
SfcI CTRYAG 1 cut(s) 512
SgrAI CRCCGGYG 1 cut(s) 169
SgrDI CGTCGACG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 1059
SsiI CCGC 7 cut(s) 114, 159, 173, 359, 419, 529, 1007
SspMI CTAG 3 cut(s) 33, 563, 893
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 963
TaaI ACNGT 6 cut(s) 206, 233, 273, 416, 926, 988
TaiI ACGT 4 cut(s) 149, 384, 689, 981
TaqI TCGA 5 cut(s) 300, 371, 461, 701, 741
TatI WGTACW 1 cut(s) 441
TauI GCSGC 3 cut(s) 116, 162, 361
TfiI GAWTC 2 cut(s) 297, 823
Tru1I TTAA 2 cut(s) 840, 998
Tru9I TTAA 2 cut(s) 840, 998
TscAI CASTG 5 cut(s) 72, 229, 546, 577, 931
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 3 cut(s) 154, 346, 830
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 298, 326
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 5 cut(s) 72, 229, 546, 577, 931
Van91I CCANNNNNTGG 1 cut(s) 970
XapI RAATTY 3 cut(s) 394, 845, 854
XbaI TCTAGA 1 cut(s) 892
XceI RCATGY 1 cut(s) 765
XmiI GTMKAC 2 cut(s) 371, 701
XmnI GAANNNNTTC 2 cut(s) 272, 822
XspI CTAG 3 cut(s) 33, 563, 893
ZraI GACGTC 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.