AT2G25735

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008399
Physical Location & Seq
Reverse (-)
10974655 .. 10975916
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25735.1

Sequence Viewer

Length: 360 bp
ATGATGTTAGAATCTTCAAGCAAAAAGAGATGGAACGTTAACGTGTTATCATCAGCTTCATCTCACAGAGAGACAATTGTACTTGGAAGATATAGCAAGAGTTGCAGAGAACAGAAGCAACACCAACGAAGAGAAAGGCTCTTGCCCAAATGGAAGGTTTTGTTGATGAAGCTTAAGCTCTTGCCTTCTCGTGCTTCTTCCACTAAGGTCGTGGCTTATGAGCCTTGTGATTACTCTTTGAATTTTGATCAAGGTCCAGGATGGCACGACCACGATGAGCCTGAGAATCTTTCACGGTCTTTCTCCTGTCGCTTCGCTGATCCCACACGGATCCGAGAAACACGCTTTCTCTTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

14.07

Weight (kDa)

9.84

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 36
AclWI GGATC 3 cut(s) 314, 325, 338
AcsI RAATTY 1 cut(s) 241
AfaI GTAC 1 cut(s) 81
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 18, 241
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 3 cut(s) 56, 172, 178
AluI AGCT 3 cut(s) 56, 172, 178
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 3 cut(s) 314, 325, 338
ApoI RAATTY 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 254
AvaII GGWCC 1 cut(s) 254
BamHI GGATCC 1 cut(s) 330
BauI CACGAG 1 cut(s) 189
BccI CCATC 2 cut(s) 24, 255
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BseBI CCWGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 247, 319, 330
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 3 cut(s) 314, 325, 338
BspTI CTTAAG 1 cut(s) 173
BssMI GATC 3 cut(s) 247, 319, 330
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 124
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 204, 282
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 3 cut(s) 250, 322, 333
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 247, 319, 330
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BtsCI GGATG 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 7 cut(s) 56, 139, 172, 178, 215, 223, 280
CviKI_1 RGCY 7 cut(s) 56, 139, 172, 178, 215, 223, 280
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 204, 282
DpnI GATC 3 cut(s) 249, 321, 332
DpnII GATC 3 cut(s) 247, 319, 330
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 256
FaiI YATR 2 cut(s) 93, 219
FbaI TGATCA 1 cut(s) 247
FokI GGATG 1 cut(s) 273
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 11, 286
HpaI GTTAAC 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 148, 195
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 2 cut(s) 36, 42
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 2 cut(s) 204, 282
HpySE526I ACGT 2 cut(s) 36, 42
Ksp22I TGATCA 1 cut(s) 247
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 3 cut(s) 247, 319, 330
LpnPI CCDG 4 cut(s) 243, 270, 294, 319
MaeII ACGT 2 cut(s) 36, 42
MalI GATC 3 cut(s) 249, 321, 332
MboI GATC 3 cut(s) 247, 319, 330
MboII GAAGA 4 cut(s) 6, 99, 141, 189
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 330
MluCI AATT 2 cut(s) 75, 241
MseI TTAA 3 cut(s) 39, 174, 358
MspCI CTTAAG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 258
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 3 cut(s) 247, 319, 330
NlaIV GGNNCC 1 cut(s) 332
PfeI GAWTC 2 cut(s) 11, 286
PfoI TCCNGGA 1 cut(s) 256
Psp1406I AACGTT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 39, 174, 358
Sau3AI GATC 3 cut(s) 247, 319, 330
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 258
SetI ASST 8 cut(s) 39, 45, 58, 159, 174, 180, 210, 256
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 2 cut(s) 75, 241
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 2 cut(s) 39, 45
TasI AATT 2 cut(s) 75, 241
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 2 cut(s) 11, 286
Tru1I TTAA 3 cut(s) 39, 174, 358
Tru9I TTAA 3 cut(s) 39, 174, 358
TspDTI ATGAA 2 cut(s) 48, 182
TspGWI ACGGA 1 cut(s) 343
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.