Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008399

Physical Location & Seq

Genomic Coordinates Forward (+)

8414392 .. 8414712

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGCATCAGAGAGTGGAGAAATTCACGCAGCCAAAGCATAAGGCTGGGACACAACTACGACATGCCAAGCAACTACAACAAGTCTCAACCAGGGTGGCAAAAATTCTGGAAAAGATTCAAGATTGAGAGGAAGAAAATTTTCGGTTCAAGTACGGTCATGCCACAGGCGCAGGCGTCTTATGATCGATCGGATACATATTCAAAGAATTTCGATCAAGGGACGCAATGGATGGAGCCGGATAACTTGCCGAGGTCTTTCTCAGCTCGTTTCGCTGATCCTTCTAGGGTTTTGCACGGCAATAGGAATTTACTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

107

Amino Acids

12.58

Weight (kDa)

10.21

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25735
fragaria_vesca	FvH4_1g05060 FvH4_2g36280
malus_domestica	MD17G1194700.v1.1
prunus_persica	Prupe.1G454200_v2.0.a1 Prupe.3G070700_v2.0.a1 Prupe.7G229300_v2.0.a1
pyrus_communis	pycom08g10060 pycom08g10080
rosa_chinensis	RchiOBHm_Chr2g0090671 RchiOBHm_Chr2g0137921 RchiOBHm_Chr6g0305601
rosa_laevigata	RLG00000010873 RLG00000016135 RLG00000019690
rosa_multiflora	Rmu_co8195442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106650 Rroxscaffold_7G00162540
rosa_rugosa	Rorug02G0009900 Rorug02G0348100 Rorug06G0342100
rosa_samantha	Rh6AG454000
rosa_wichuraiana	Rw6G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	5 cut(s)	22, 104, 138, 208, 307
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	121, 150, 204
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	5 cut(s)	22, 104, 138, 208, 307
Asp700I	GAANNNNTTC	2 cut(s)	116, 140
AspLEI	GCGC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	93
BciVI	GTATCC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	15
Bsa29I	ATCGAT	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	92, 251
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	93
BseCI	ATCGAT	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	92, 251
BseGI	GGATG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	63, 235
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	63, 235
Bsp143I	GATC	4 cut(s)	184, 188, 214, 277
BspCNI	CTCAG	1 cut(s)	275
BspDI	ATCGAT	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	92, 251
BssMI	GATC	4 cut(s)	184, 188, 214, 277
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	4 cut(s)	187, 191, 217, 280
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	4 cut(s)	184, 188, 214, 277
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 169, 272
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	187
CseI	GACGC	2 cut(s)	165, 232
Csp6I	GTAC	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	2 cut(s)	64, 160
CviJI	RGCY	4 cut(s)	33, 46, 238, 266
CviKI_1	RGCY	4 cut(s)	33, 46, 238, 266
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	4 cut(s)	186, 190, 216, 279
DpnII	GATC	4 cut(s)	184, 188, 214, 277
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	67, 163
FaiI	YATR	5 cut(s)	41, 65, 161, 183, 199
FaqI	GGGAC	2 cut(s)	63, 235
FatI	CATG	2 cut(s)	63, 159
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	31
GsaI	CCCAGC	1 cut(s)	50
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	2 cut(s)	165, 232
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	67, 163
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	11, 193
Hpy188III	TCNNGA	2 cut(s)	109, 121
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 169, 272
HpyF3I	CTNAG	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	67, 163
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	184, 188, 214, 277
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	32, 78, 94, 105, 152, 158, 252, 299
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	285
MalI	GATC	4 cut(s)	186, 190, 216, 279
MboI	GATC	4 cut(s)	184, 188, 214, 277
MboII	GAAGA	1 cut(s)	145
MluCI	AATT	5 cut(s)	22, 104, 138, 208, 307
MnlI	CCTC	2 cut(s)	123, 246
MroXI	GAANNNNTTC	2 cut(s)	116, 140
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	36, 169, 272
NdeII	GATC	4 cut(s)	184, 188, 214, 277
NlaIII	CATG	2 cut(s)	67, 163
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	276
NspI	RCATGY	1 cut(s)	67
PdmI	GAANNNNTTC	2 cut(s)	116, 140
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	32
Ple19I	CGATCG	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	237
PvuI	CGATCG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	4 cut(s)	184, 188, 214, 277
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	2 cut(s)	257, 268
SfaNI	GCATC	1 cut(s)	15
Sse9I	AATT	5 cut(s)	22, 104, 138, 208, 307
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	187, 213
TasI	AATT	5 cut(s)	22, 104, 138, 208, 307
TfiI	GAWTC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	30
XapI	RAATTY	5 cut(s)	22, 104, 138, 208, 307
XceI	RCATGY	1 cut(s)	67
XmnI	GAANNNNTTC	2 cut(s)	116, 140
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.