Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008399

Physical Location & Seq

Genomic Coordinates Forward (+)

4124254 .. 4124604

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016135

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGATAGAAAACACTGGTGCAGCACAAGCAGCAGAACTATCCGGTTGGGGCGGTATTACCATGACACTGACCCTCATGTGAGCTCGCACTCAGCTAGATCAAACAAGTCACGGTGGAGCACATTGTGGATGAAGTTGAAGAAAGAGAAGAAGAAGATTTTCGATTCTCCAGCTAGCTCTCGCTCTGCGAGGCTCCAATATGATGCTTTCTCTTACTCTCAGAATTTTGATCAAGGATGTTCCTGGGACCAACCTGATGAAGATGACCTTTGTTCGCGCTCCTTCTCCATGCGTTTTGCAGTTCCTTCTTACATCTTTCGAAAGGAAGATTTGCTTCCTTGGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.85

Weight (kDa)

9.05

Isoelectric Point (pI)

66.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25735
fragaria_vesca	FvH4_1g05060 FvH4_2g36280
malus_domestica	MD17G1194700.v1.1
prunus_persica	Prupe.1G454200_v2.0.a1 Prupe.3G070700_v2.0.a1 Prupe.7G229300_v2.0.a1
pyrus_communis	pycom08g10060 pycom08g10080
rosa_chinensis	RchiOBHm_Chr2g0090671 RchiOBHm_Chr2g0137921 RchiOBHm_Chr6g0305601
rosa_laevigata	RLG00000010873 RLG00000016135 RLG00000019690
rosa_multiflora	Rmu_co8195442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106650 Rroxscaffold_7G00162540
rosa_rugosa	Rorug02G0009900 Rorug02G0348100 Rorug06G0342100
rosa_samantha	Rh6AG454000
rosa_wichuraiana	Rw6G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	277
AciI	CCGC	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	223
AdeI	CACNNNGTG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	4 cut(s)	84, 95, 173, 177
AluI	AGCT	4 cut(s)	84, 95, 173, 177
Alw21I	GWGCWC	2 cut(s)	86, 122
ApeKI	GCWGC	2 cut(s)	21, 30
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	319
AsuNHI	GCTAGC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	86, 122
BbvI	GCAGC	2 cut(s)	33, 42
BciT130I	CCWGG	1 cut(s)	244
BclI	TGATCA	1 cut(s)	229
BfaI	CTAG	2 cut(s)	96, 174
BisI	GCNGC	2 cut(s)	22, 31
BlsI	GCNGC	2 cut(s)	23, 32
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	194, 248
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	193
BmtI	GCTAGC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	243, 338
BsaWI	WCCGGW	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	243, 338
BseGI	GGATG	2 cut(s)	135, 242
BseMII	CTCAG	2 cut(s)	105, 233
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	33, 42
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	86, 122
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	86, 122
Bsp143I	GATC	2 cut(s)	98, 229
BspACI	CCGC	1 cut(s)	52
BspCNI	CTCAG	2 cut(s)	104, 232
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	194, 248
BspOI	GCTAGC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	243, 338
BssMI	GATC	2 cut(s)	98, 229
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	86, 175
BstDEI	CTNAG	2 cut(s)	91, 219
BstF5I	GGATG	2 cut(s)	135, 242
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	101, 232
BstMBI	GATC	2 cut(s)	98, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 30
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	33, 42
BtsCI	GGATG	2 cut(s)	135, 242
BtsIMutI	CAGTG	2 cut(s)	13, 66
Cac8I	GCNNGC	2 cut(s)	86, 175
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	3 cut(s)	62, 77, 289
CviJI	RGCY	5 cut(s)	84, 95, 173, 177, 193
CviKI_1	RGCY	5 cut(s)	84, 95, 173, 177, 193
DdeI	CTNAG	2 cut(s)	91, 219
DpnI	GATC	2 cut(s)	100, 231
DpnII	GATC	2 cut(s)	98, 229
DraIII	CACNNNGTG	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	65, 80, 292
FaiI	YATR	4 cut(s)	63, 78, 201, 290
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 318, 350
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	61, 76, 288
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	22, 31
FokI	GGATG	2 cut(s)	142, 249
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	22, 31
FspBI	CTAG	2 cut(s)	96, 174
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	2 cut(s)	22, 31
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	65, 80, 292
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	292, 315
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	21, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 30
HpyF3I	CTNAG	2 cut(s)	91, 219
Hsp92II	CATG	3 cut(s)	65, 80, 292
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	98, 229
LmnI	GCTCC	3 cut(s)	117, 198, 284
LpnPI	CCDG	5 cut(s)	56, 183, 229, 256, 267
Lsp1109I	GCAGC	2 cut(s)	33, 42
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	96, 174
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	2 cut(s)	100, 231
MboI	GATC	2 cut(s)	98, 229
MboII	GAAGA	6 cut(s)	151, 160, 163, 166, 272, 338
MhlI	GDGCHC	2 cut(s)	86, 122
MluCI	AATT	1 cut(s)	223
MnlI	CCTC	3 cut(s)	84, 183, 337
MroXI	GAANNNNTTC	1 cut(s)	158
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	27, 30
NdeII	GATC	2 cut(s)	98, 229
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	65, 80, 292
NlaIV	GGNNCC	2 cut(s)	194, 248
NmuCI	GTSAC	1 cut(s)	108
NspV	TTCGAA	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	23, 32
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	194, 248
PspPI	GGNCC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	86
SatI	GCNGC	2 cut(s)	22, 31
Sau3AI	GATC	2 cut(s)	98, 229
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	86, 122
SetI	ASST	6 cut(s)	86, 97, 175, 179, 256, 270
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	2 cut(s)	96, 174
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	162, 319
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	2 cut(s)	20, 73
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	2 cut(s)	21, 30
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	146, 273
TspRI	CASTG	2 cut(s)	20, 73
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	2 cut(s)	96, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.