Rorug02G0348100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008399
Physical Location & Seq
Forward (+)
43611832 .. 43612032
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0348100.1

Sequence Viewer

Length: 201 bp
ATGGCAGAAGATCGGATTCGATCCAGGCCAGGCAGGAAGCGACTGAAGGAGGAGATACAGGCGATCCGATCGGGGTACAACCATGGCCTTTGTACTCGGAGAAGAGTGGCGGCGGACGTCCTTGCAGAGGGGATGGCGCTGGCCAAAGCACCTCGTGGTGTGAACATGGAGGCCAACCGCCCAGTTGGAGTGACGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.31

Weight (kDa)

11.12

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AciI CCGC 3 cut(s) 110, 113, 178
AclWI GGATC 2 cut(s) 15, 58
AcoI YGGCCR 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 2 cut(s) 77, 94
AfiI CCNNNNNNNGG 1 cut(s) 127
AjnI CCWGG 2 cut(s) 23, 28
AlwI GGATC 2 cut(s) 15, 58
AoxI GGCC 4 cut(s) 26, 85, 141, 171
AspLEI GCGC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 143
BauI CACGAG 1 cut(s) 153
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 25, 30
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 25, 30
BmrFI CCNGG 2 cut(s) 25, 30
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 2 cut(s) 25, 30
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 4 cut(s) 28, 87, 143, 173
BsiEI CGRYCG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 4 cut(s) 28, 87, 143, 173
Bsp143I GATC 5 cut(s) 10, 20, 63, 68, 195
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 3 cut(s) 110, 113, 178
BspANI GGCC 4 cut(s) 28, 87, 143, 173
BspPI GGATC 2 cut(s) 15, 58
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 5 cut(s) 10, 20, 63, 68, 195
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 25, 30
Bst6I CTCTTC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 5 cut(s) 13, 23, 66, 71, 198
BstMBI GATC 5 cut(s) 10, 20, 63, 68, 195
BstMCI CGRYCG 1 cut(s) 71
BstNI CCWGG 2 cut(s) 25, 30
BstSCI CCNGG 2 cut(s) 23, 28
BsuRI GGCC 4 cut(s) 28, 87, 143, 173
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 76, 93
CviAII CATG 2 cut(s) 83, 166
CviJI RGCY 4 cut(s) 28, 87, 143, 173
CviKI_1 RGCY 4 cut(s) 28, 87, 143, 173
CviQI GTAC 2 cut(s) 76, 93
DpnI GATC 5 cut(s) 12, 22, 65, 70, 197
DpnII GATC 5 cut(s) 10, 20, 63, 68, 195
DraIII CACNNNGTG 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 65
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 23, 28
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 2 cut(s) 86, 169
FaiI YATR 2 cut(s) 84, 167
FatI CATG 2 cut(s) 82, 165
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 4 cut(s) 28, 87, 143, 173
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 86, 169
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 4 cut(s) 15, 68, 99, 200
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 86, 169
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 5 cut(s) 10, 20, 63, 68, 195
LpnPI CCDG 8 cut(s) 10, 15, 19, 37, 42, 44, 125, 195
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 190
MalI GATC 5 cut(s) 12, 22, 65, 70, 197
MboI GATC 5 cut(s) 10, 20, 63, 68, 195
MboII GAAGA 2 cut(s) 20, 114
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 43, 121, 162, 163
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 25, 30
MvaI CCWGG 2 cut(s) 25, 30
NcoI CCATGG 1 cut(s) 82
NdeII GATC 5 cut(s) 10, 20, 63, 68, 195
NlaIII CATG 2 cut(s) 86, 169
NmuCI GTSAC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 112
Ple19I CGATCG 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 23, 28
PspGI CCWGG 2 cut(s) 23, 28
PvuI CGATCG 1 cut(s) 71
RsaI GTAC 2 cut(s) 77, 94
RsaNI GTAC 2 cut(s) 76, 93
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 5 cut(s) 10, 20, 63, 68, 195
ScrFI CCNGG 2 cut(s) 25, 30
SetI ASST 2 cut(s) 120, 154
SsiI CCGC 3 cut(s) 110, 113, 178
StyD4I CCNGG 2 cut(s) 23, 28
StyI CCWWGG 1 cut(s) 82
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 19
TatI WGTACW 1 cut(s) 92
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 16
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 125
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.