MD17G1194700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0008399
Physical Location & Seq
Forward (+)
23315004 .. 23315378
375 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1194700.v1.1.491

Sequence Viewer

Length: 375 bp
ATGGACCTTCACATTTGGCGCAACTCAGTGATTTCAAACATCCAAACCGTTGCCAAAATTGGGTCTGGGAGCATGGTGTCTCTCAGCGAGCTGGTACTTAGTGCAGATCAAACCAAGATTAACATGCCGATTAATATTAGGTGGAAAGTTTTGTGGAAAAGAATAAAGAAGGAGAAGAAAAGGACGTTGCAGCTGTTTGATTGCTCGACTAGCACTCAGGTCGTGCATGTTCCTTACGATCCTTATACGTATTCCAAGAATTTCGATCAGGGTTCGGCGGCTTGGGCAGATCCAGACGTTCTTTCGAGGTCTTTTTCTGCTAGGTTTGCTGTTCCTTGTCAAGTTTTCCATCAGCCTGCTCAGAACGTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.07

Weight (kDa)

9.59

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AclI AACGTT 1 cut(s) 366
AclWI GGATC 2 cut(s) 233, 284
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 36
AluBI AGCT 2 cut(s) 91, 193
AluI AGCT 2 cut(s) 91, 193
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 2 cut(s) 233, 284
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 259
AseI ATTAAT 1 cut(s) 132
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 210, 321
BisI GCNGC 2 cut(s) 191, 279
BlsI GCNGC 2 cut(s) 192, 280
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BsaAI YACGTR 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 4 cut(s) 39, 97, 230, 374
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 84
Bsp143I GATC 4 cut(s) 106, 238, 265, 289
BspACI CCGC 1 cut(s) 278
BspCNI CTCAG 4 cut(s) 38, 96, 229, 373
BspPI GGATC 2 cut(s) 233, 284
BssMI GATC 4 cut(s) 106, 238, 265, 289
Bst4CI ACNGT 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 89, 357
BstDEI CTNAG 5 cut(s) 25, 83, 98, 216, 360
BstF5I GGATG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 4 cut(s) 109, 241, 268, 292
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 106, 238, 265, 289
BstMWI GCNNNNNNNGC 3 cut(s) 210, 284, 326
BstNSI RCATGY 2 cut(s) 127, 230
BstSNI TACGTA 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 89, 357
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 95
CviAII CATG 3 cut(s) 73, 124, 227
CviJI RGCY 5 cut(s) 91, 193, 281, 355, 372
CviKI_1 RGCY 5 cut(s) 91, 193, 281, 355, 372
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 5 cut(s) 25, 83, 98, 216, 360
DpnI GATC 4 cut(s) 108, 240, 267, 291
DpnII GATC 4 cut(s) 106, 238, 265, 289
Eco105I TACGTA 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 3 cut(s) 76, 127, 230
FaiI YATR 4 cut(s) 74, 125, 228, 246
FatI CATG 3 cut(s) 72, 123, 226
Fnu4HI GCNGC 2 cut(s) 191, 279
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 191, 279
FspBI CTAG 2 cut(s) 210, 321
GlaI GCGC 1 cut(s) 20
GluI GCNGC 2 cut(s) 191, 279
HhaI GCGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 76, 127, 230
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 17, 163
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 4 cut(s) 185, 248, 297, 366
HpyCH4V TGCA 3 cut(s) 104, 190, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 284, 326
HpyF3I CTNAG 5 cut(s) 25, 83, 98, 216, 360
HpySE526I ACGT 4 cut(s) 185, 248, 297, 366
Hsp92II CATG 3 cut(s) 76, 127, 230
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 4 cut(s) 106, 238, 265, 289
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 6 cut(s) 51, 77, 203, 254, 306, 369
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 2 cut(s) 210, 321
MaeII ACGT 4 cut(s) 185, 248, 297, 366
MalI GATC 4 cut(s) 108, 240, 267, 291
MboI GATC 4 cut(s) 106, 238, 265, 289
MboII GAAGA 1 cut(s) 187
MflI RGATCY 1 cut(s) 289
MluCI AATT 2 cut(s) 57, 259
MnlI CCTC 1 cut(s) 300
MseI TTAA 2 cut(s) 120, 132
MspA1I CMGCKG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 210, 284, 326
NdeII GATC 4 cut(s) 106, 238, 265, 289
NlaIII CATG 3 cut(s) 76, 127, 230
NspI RCATGY 2 cut(s) 127, 230
PkrI GCNGC 2 cut(s) 192, 280
Ppu21I YACGTR 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 366
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 120, 132
SatI GCNGC 2 cut(s) 191, 279
Sau3AI GATC 4 cut(s) 106, 238, 265, 289
Sau96I GGNCC 1 cut(s) 4
SinI GGWCC 1 cut(s) 4
SnaBI TACGTA 1 cut(s) 249
Sse9I AATT 2 cut(s) 57, 259
SsiI CCGC 1 cut(s) 278
SspI AATATT 1 cut(s) 136
SspMI CTAG 2 cut(s) 210, 321
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 4 cut(s) 188, 251, 300, 369
TaqI TCGA 3 cut(s) 206, 264, 305
TasI AATT 2 cut(s) 57, 259
TauI GCSGC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 120, 132
Tru9I TTAA 2 cut(s) 120, 132
TscAI CASTG 1 cut(s) 33
TseI GCWGC 1 cut(s) 190
TspRI CASTG 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 1 cut(s) 259
XceI RCATGY 2 cut(s) 127, 230
XspI CTAG 2 cut(s) 210, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.