Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008399

Physical Location & Seq

Genomic Coordinates Reverse (-)

63903310 .. 63904000

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG454000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGGATCAAAGAGTGGTATGGTTCACGCAGTCCAACTCCAAGCATCAGGTTGGGAGAGCCAAGCACTACGTACACCAAAGCTCAACCAAAGTGGCAAATTTTTTTGAAGAAACTCAAGAAGGAGAAGAAGAAGAGTTTCAGTTCTGGTACTGTTCTAGCGCATTCGCAGCAGACTAGTTATGATCCCAAAACATACTCAAAGAATTTTGATAGAGGAATGGGGTGGACAGAGCCTGATAACTTATCGAGGTCTTTCTCAGCTCGGTTTGCTAATCCATCAAGGGTTCTATATAGGAATGATTTATTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

104

Amino Acids

12.0

Weight (kDa)

10.04

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25735
fragaria_vesca	FvH4_1g05060 FvH4_2g36280
malus_domestica	MD17G1194700.v1.1
prunus_persica	Prupe.1G454200_v2.0.a1 Prupe.3G070700_v2.0.a1 Prupe.7G229300_v2.0.a1
pyrus_communis	pycom08g10060 pycom08g10080
rosa_chinensis	RchiOBHm_Chr2g0090671 RchiOBHm_Chr2g0137921 RchiOBHm_Chr6g0305601
rosa_laevigata	RLG00000010873 RLG00000016135 RLG00000019690
rosa_multiflora	Rmu_co8195442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106650 Rroxscaffold_7G00162540
rosa_rugosa	Rorug02G0009900 Rorug02G0348100 Rorug06G0342100
rosa_samantha	Rh6AG454000
rosa_wichuraiana	Rw6G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	14, 179
AcsI	RAATTY	2 cut(s)	99, 205
AfaI	GTAC	2 cut(s)	74, 151
AgsI	TTSAA	1 cut(s)	109
AhlI	ACTAGT	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	1 cut(s)	290
AluBI	AGCT	2 cut(s)	83, 263
AluI	AGCT	2 cut(s)	83, 263
AlwI	GGATC	2 cut(s)	14, 179
AlwNI	CAGNNNCTG	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	2 cut(s)	99, 205
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	286
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	2 cut(s)	158, 177
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmsI	GCATC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	6, 184
BspCNI	CTCAG	1 cut(s)	272
BspPI	GGATC	2 cut(s)	14, 179
BssMI	GATC	2 cut(s)	6, 184
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	9, 187
BstMBI	GATC	2 cut(s)	6, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 269
BstSNI	TACGTA	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	73, 150
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviJI	RGCY	4 cut(s)	61, 83, 235, 263
CviKI_1	RGCY	4 cut(s)	61, 83, 235, 263
CviQI	GTAC	2 cut(s)	73, 150
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	2 cut(s)	8, 186
DpnII	GATC	2 cut(s)	6, 184
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	72
FaiI	YATR	5 cut(s)	21, 183, 196, 292, 294
Fnu4HI	GCNGC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	2 cut(s)	158, 177
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
Hpy166II	GTNNAC	3 cut(s)	26, 75, 228
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	3 cut(s)	26, 75, 228
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 269
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	71
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	6, 184
LpnPI	CCDG	3 cut(s)	34, 132, 249
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	158, 177
MaeII	ACGT	1 cut(s)	71
MalI	GATC	2 cut(s)	8, 186
MboI	GATC	2 cut(s)	6, 184
MboII	GAAGA	4 cut(s)	121, 139, 142, 145
MluCI	AATT	2 cut(s)	99, 205
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	209, 243
MroXI	GAANNNNTTC	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	169, 269
NdeII	GATC	2 cut(s)	6, 184
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	74, 151
RsaNI	GTAC	2 cut(s)	73, 150
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	6, 184
SetI	ASST	5 cut(s)	53, 74, 85, 254, 265
SfaNI	GCATC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SnaBI	TACGTA	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	2 cut(s)	99, 205
SspMI	CTAG	2 cut(s)	158, 177
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	99, 205
TseI	GCWGC	1 cut(s)	169
XapI	RAATTY	2 cut(s)	99, 205
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	2 cut(s)	158, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.