Prupe.7G229300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008399
Physical Location & Seq
Reverse (-)
20199768 .. 20200670
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G229300.1

Sequence Viewer

Length: 345 bp
ATGGATATAAGAAACTGGTGCAGTTCAGGCAGCAGCAAAACCATCCACTTGGGTGGGAGGCACTACGATGAGATCGACTGTATGAGATTACGGTCTGATTCTGGTAGCAGATCAAACAAGTTGAGGTGGAAAGTTTTGTGGGTGAAGTTGAAGAAAGAAAAGAGGAAGATTTTCGAGTCCCCAGCCCCTGTGCAGGTCTCATATGATCCTTACACTTACTCTCAAAATTTTGATCAAGGGTGCGCATTGGACGAACTTGATGAATATGATGACCTATCTCGCTCATTCTCCATGCGTTTTGCAGATCCTTCTAACATCTTTTTAAAGAAAGAATCGATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.37

Weight (kDa)

8.44

Isoelectric Point (pI)

74.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 184
AclWI GGATC 2 cut(s) 200, 299
AcsI RAATTY 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 151
AleI CACNNNNGTG 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 2 cut(s) 200, 299
AlwNI CAGNNNCTG 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 30, 33
ApoI RAATTY 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 154
BbvI GCAGC 2 cut(s) 42, 45
BccI CCATC 2 cut(s) 50, 331
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 2 cut(s) 31, 34
BlsI GCNGC 2 cut(s) 32, 35
Bsa29I ATCGAT 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 335
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 42, 45
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 2 cut(s) 40, 212
BshVI ATCGAT 1 cut(s) 335
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 163
Bso31I GGTCTC 1 cut(s) 202
Bsp143I GATC 5 cut(s) 72, 110, 205, 232, 304
BspDI ATCGAT 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 2 cut(s) 200, 299
BspTNI GGTCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 20
BssMI GATC 5 cut(s) 72, 110, 205, 232, 304
Bst4CI ACNGT 2 cut(s) 80, 93
BstF5I GGATG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 5 cut(s) 75, 113, 208, 235, 307
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 5 cut(s) 72, 110, 205, 232, 304
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 42, 45
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 2 cut(s) 49, 53
BstYI RGATCY 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 188
CfoI GCGC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 335
CviAII CATG 1 cut(s) 292
CviJI RGCY 1 cut(s) 185
CviKI_1 RGCY 1 cut(s) 185
DpnI GATC 5 cut(s) 74, 112, 207, 234, 306
DpnII GATC 5 cut(s) 72, 110, 205, 232, 304
DraI TTTAAA 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 202
FaeI CATG 1 cut(s) 295
FaiI YATR 6 cut(s) 8, 83, 202, 204, 267, 293
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 291
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 31, 34
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 31, 34
FspAI RTGCGCAY 1 cut(s) 244
FspI TGCGCA 1 cut(s) 244
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 31, 34
GsaI CCCAGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 245
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 3 cut(s) 98, 176, 332
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 2 cut(s) 80, 93
HpyCH4V TGCA 3 cut(s) 21, 193, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 5 cut(s) 72, 110, 205, 232, 304
LpnPI CCDG 5 cut(s) 12, 87, 179, 195, 201
Lsp1109I GCAGC 2 cut(s) 42, 45
MalI GATC 5 cut(s) 74, 112, 207, 234, 306
MboI GATC 5 cut(s) 72, 110, 205, 232, 304
MboII GAAGA 2 cut(s) 163, 178
MflI RGATCY 1 cut(s) 304
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 3 cut(s) 51, 117, 156
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 2 cut(s) 51, 66
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeI CATATG 1 cut(s) 202
NdeII GATC 5 cut(s) 72, 110, 205, 232, 304
NlaIII CATG 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 98, 332
PkrI GCNGC 2 cut(s) 32, 35
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 304
RseI CAYNNNNRTG 2 cut(s) 51, 66
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 2 cut(s) 31, 34
Sau3AI GATC 5 cut(s) 72, 110, 205, 232, 304
SchI GAGTC 1 cut(s) 185
SetI ASST 3 cut(s) 128, 198, 276
SmiMI CAYNNNNRTG 2 cut(s) 51, 66
Sse9I AATT 1 cut(s) 226
TaaI ACNGT 2 cut(s) 80, 93
TaqI TCGA 3 cut(s) 75, 174, 335
TasI AATT 1 cut(s) 226
TfiI GAWTC 2 cut(s) 98, 332
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TseI GCWGC 2 cut(s) 30, 33
TspDTI ATGAA 1 cut(s) 276
XapI RAATTY 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.