FvH4_1g05060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008399
Physical Location & Seq
Forward (+)
2685715 .. 2686589
875 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05060.t1

Sequence Viewer

Length: 351 bp
ATGGATAGAAAACACTGGTGCAGCACAAGCAGCAGAACTATCCGGTTGGGGCGGCAGTACCATGAGACTGACCCTCATGTGAGCTCGCATTCAGCTAGATCAAACAGGTCACGGTGGAGCACATTGTGGATGAAGTTGAAGAAAGAGAAGAAGAAGATTTTTGATTCCCCATCCAGCACTCGCTCCGTGAAGCTCCAGTATGATCCTTTCTCTTACTCTCAGAATTTTGATCAAGGATGTTCTTGGGACCAACATGATGCTGATGACCTCTCGTCGCGCTCTTTCTCTATGCGTTTTGCAGTTCCTTCTAACATCTTTCAAAAGGGAGAGTTGCTTGCTTGGGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.72

Weight (kDa)

9.43

Isoelectric Point (pI)

66.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 277
AciI CCGC 1 cut(s) 52
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 126
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 2 cut(s) 139, 320
AhdI GACNNNNNGTC 1 cut(s) 271
AluBI AGCT 3 cut(s) 84, 95, 193
AluI AGCT 3 cut(s) 84, 95, 193
Alw21I GWGCWC 2 cut(s) 86, 122
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 21, 30
ApoI RAATTY 1 cut(s) 223
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 247
AvaII GGWCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 86, 122
BbvI GCAGC 2 cut(s) 33, 42
BccI CCATC 1 cut(s) 178
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 96
BisI GCNGC 3 cut(s) 22, 31, 53
BlsI GCNGC 3 cut(s) 23, 32, 54
Bme18I GGWCC 1 cut(s) 247
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 20, 196
BseGI GGATG 3 cut(s) 135, 170, 242
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 2 cut(s) 20, 196
BseXI GCAGC 2 cut(s) 33, 42
BsgI GTGCAG 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 86, 122
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 86, 122
Bsp143I GATC 3 cut(s) 98, 202, 229
BspACI CCGC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 197
BsrI ACTGG 2 cut(s) 20, 196
BssMI GATC 3 cut(s) 98, 202, 229
Bst4CI ACNGT 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 86, 336
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 135, 170, 242
BstFNI CGCG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 101, 205, 232
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 98, 202, 229
BstMWI GCNNNNNNNGC 2 cut(s) 27, 30
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 33, 42
BtsCI GGATG 3 cut(s) 135, 170, 242
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 86, 336
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 58
CviAII CATG 3 cut(s) 62, 77, 254
CviJI RGCY 3 cut(s) 84, 95, 193
CviKI_1 RGCY 3 cut(s) 84, 95, 193
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 100, 204, 231
DpnII GATC 3 cut(s) 98, 202, 229
DraIII CACNNNGTG 1 cut(s) 126
DriI GACNNNNNGTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 3 cut(s) 65, 80, 257
FaiI YATR 5 cut(s) 63, 78, 201, 255, 290
FaqI GGGAC 1 cut(s) 260
FatI CATG 3 cut(s) 61, 76, 253
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 3 cut(s) 22, 31, 53
FokI GGATG 3 cut(s) 142, 157, 249
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 3 cut(s) 22, 31, 53
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 22, 31, 53
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 65, 80, 257
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 21, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 30
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 3 cut(s) 65, 80, 257
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 98, 202, 229
LmnI GCTCC 3 cut(s) 117, 188, 198
LpnPI CCDG 4 cut(s) 56, 91, 187, 209
Lsp1109I GCAGC 2 cut(s) 33, 42
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 108
MalI GATC 3 cut(s) 100, 204, 231
MboI GATC 3 cut(s) 98, 202, 229
MboII GAAGA 4 cut(s) 151, 160, 163, 166
MhlI GDGCHC 2 cut(s) 86, 122
MluCI AATT 1 cut(s) 223
MnlI CCTC 3 cut(s) 84, 278, 337
MspI CCGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 88
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 27, 30
NdeII GATC 3 cut(s) 98, 202, 229
NlaIII CATG 3 cut(s) 65, 80, 257
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 108
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 23, 32, 54
Psp124BI GAGCTC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 86
SatI GCNGC 3 cut(s) 22, 31, 53
Sau3AI GATC 3 cut(s) 98, 202, 229
Sau96I GGNCC 1 cut(s) 247
SduI GDGCHC 2 cut(s) 86, 122
SetI ASST 5 cut(s) 86, 97, 110, 195, 270
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 247
Sse9I AATT 1 cut(s) 223
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 96
SstI GAGCTC 1 cut(s) 86
TaaI ACNGT 1 cut(s) 114
TasI AATT 1 cut(s) 223
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 2 cut(s) 21, 30
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 146
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 1 cut(s) 223
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.