Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008399

Physical Location & Seq

Genomic Coordinates Forward (+)

38185183 .. 38185954

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G454200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGCATCAAAGAGTGGTGCAATTCACGCAGCCAAAGCATGAGGTTGGGGCAGCCTTACATGCCAAGCAATTACAACAAGCCTGATCGGCCGGGGTGGCAAAGATTTTGGAAGAAATTCAAGATGGACAAGAAGAAGAAAAGTTTCAGTTCTAGCACTGTCACGCCGCAGGCAGCTTCTTATGATCCGAAAACATATTCGAAAAATTTCGATCGAGGGATGGGATCGATGGAGCCGGATAACTTATCCCGGAGTTTCTCAGCTCGTTTTGCTGATCCATCCATGATTTTGCATAACAATAGGAACTTACTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

12.27

Weight (kDa)

10.06

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25735
fragaria_vesca	FvH4_1g05060 FvH4_2g36280
malus_domestica	MD17G1194700.v1.1
prunus_persica	Prupe.1G454200_v2.0.a1 Prupe.3G070700_v2.0.a1 Prupe.7G229300_v2.0.a1
pyrus_communis	pycom08g10060 pycom08g10080
rosa_chinensis	RchiOBHm_Chr2g0090671 RchiOBHm_Chr2g0137921 RchiOBHm_Chr6g0305601
rosa_laevigata	RLG00000010873 RLG00000016135 RLG00000019690
rosa_multiflora	Rmu_co8195442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106650 Rroxscaffold_7G00162540
rosa_rugosa	Rorug02G0009900 Rorug02G0348100 Rorug06G0342100
rosa_samantha	Rh6AG454000
rosa_wichuraiana	Rw6G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	3 cut(s)	179, 232, 269
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	116, 205
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	2 cut(s)	176, 263
AluI	AGCT	2 cut(s)	176, 263
AlwI	GGATC	3 cut(s)	179, 232, 269
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	3 cut(s)	30, 52, 173
ApoI	RAATTY	2 cut(s)	116, 205
Asp700I	GAANNNNTTC	3 cut(s)	116, 143, 206
AsuC2I	CCSGG	2 cut(s)	93, 250
AsuII	TTCGAA	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	42, 64, 185
BccI	CCATC	4 cut(s)	118, 214, 223, 286
BcnI	CCSGG	2 cut(s)	93, 250
BfaI	CTAG	1 cut(s)	153
BglI	GCCNNNNNGGC	2 cut(s)	88, 97
BisI	GCNGC	4 cut(s)	31, 53, 167, 174
BlsI	GCNGC	4 cut(s)	32, 54, 168, 175
Bme1390I	CCNGG	2 cut(s)	93, 250
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	93, 250
BmsI	GCATC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	93, 250
Bsa29I	ATCGAT	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	225, 278
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	42, 64, 185
Bsh1285I	CGRYCG	2 cut(s)	92, 214
BshFI	GGCC	1 cut(s)	91
BshVI	ATCGAT	1 cut(s)	227
BsiEI	CGRYCG	2 cut(s)	92, 214
BsiSI	CCGG	3 cut(s)	92, 236, 250
BsnI	GGCC	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	200
Bsp143I	GATC	5 cut(s)	85, 184, 211, 224, 274
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	272
BspDI	ATCGAT	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	3 cut(s)	179, 232, 269
BspT104I	TTCGAA	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	5 cut(s)	85, 184, 211, 224, 274
Bst4CI	ACNGT	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	225, 278
BstKTI	GATC	5 cut(s)	88, 187, 214, 227, 277
BstMBI	GATC	5 cut(s)	85, 184, 211, 224, 274
BstMCI	CGRYCG	2 cut(s)	92, 214
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 36, 61, 88, 97, 269
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	91, 248
BstV1I	GCAGC	3 cut(s)	42, 64, 185
BstZI	CGGCCG	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	91
BsuTUI	ATCGAT	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	225, 278
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	227
CviAII	CATG	3 cut(s)	40, 61, 283
CviJI	RGCY	7 cut(s)	33, 55, 82, 91, 176, 235, 263
CviKI_1	RGCY	7 cut(s)	33, 55, 82, 91, 176, 235, 263
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	5 cut(s)	87, 186, 213, 226, 276
DpnII	GATC	5 cut(s)	85, 184, 211, 224, 274
EaeI	YGGCCR	1 cut(s)	89
EagI	CGGCCG	1 cut(s)	89
EclXI	CGGCCG	1 cut(s)	89
Eco52I	CGGCCG	1 cut(s)	89
FaeI	CATG	3 cut(s)	43, 64, 286
FaiI	YATR	6 cut(s)	41, 62, 183, 196, 284, 294
FatI	CATG	3 cut(s)	39, 60, 282
Fnu4HI	GCNGC	4 cut(s)	31, 53, 167, 174
FokI	GGATG	2 cut(s)	232, 265
Fsp4HI	GCNGC	4 cut(s)	31, 53, 167, 174
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	4 cut(s)	31, 53, 167, 174
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	3 cut(s)	92, 236, 250
Hin1II	CATG	3 cut(s)	43, 64, 286
HpaII	CCGG	3 cut(s)	92, 236, 250
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	21, 292
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 36, 61, 88, 97, 269
HpyF3I	CTNAG	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	43, 64, 286
Kzo9I	GATC	5 cut(s)	85, 184, 211, 224, 274
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	6 cut(s)	96, 105, 155, 249, 263, 296
Lsp1109I	GCAGC	3 cut(s)	42, 64, 185
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	5 cut(s)	87, 186, 213, 226, 276
MboI	GATC	5 cut(s)	85, 184, 211, 224, 274
MboII	GAAGA	3 cut(s)	124, 145, 148
MluCI	AATT	4 cut(s)	22, 70, 116, 205
MnlI	CCTC	2 cut(s)	36, 209
MroXI	GAANNNNTTC	3 cut(s)	116, 143, 206
MspI	CCGG	3 cut(s)	92, 236, 250
MspR9I	CCNGG	2 cut(s)	93, 250
MwoI	GCNNNNNNNGC	6 cut(s)	27, 36, 61, 88, 97, 269
NciI	CCSGG	2 cut(s)	93, 250
NdeII	GATC	5 cut(s)	85, 184, 211, 224, 274
NlaIII	CATG	3 cut(s)	43, 64, 286
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	200
PdmI	GAANNNNTTC	3 cut(s)	116, 143, 206
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	32, 54, 168, 175
Ple19I	CGATCG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	234
PvuI	CGATCG	1 cut(s)	214
SatI	GCNGC	4 cut(s)	31, 53, 167, 174
Sau3AI	GATC	5 cut(s)	85, 184, 211, 224, 274
ScrFI	CCNGG	2 cut(s)	93, 250
SetI	ASST	3 cut(s)	47, 178, 265
SfaNI	GCATC	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	200
Sse9I	AATT	4 cut(s)	22, 70, 116, 205
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	91, 248
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	4 cut(s)	200, 210, 214, 227
TasI	AATT	4 cut(s)	22, 70, 116, 205
TauI	GCSGC	1 cut(s)	169
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	30, 52, 173
Tsp45I	GTSAC	1 cut(s)	160
TspRI	CASTG	1 cut(s)	163
XapI	RAATTY	2 cut(s)	116, 205
XceI	RCATGY	1 cut(s)	64
XmnI	GAANNNNTTC	3 cut(s)	116, 143, 206
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.