Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008399

Physical Location & Seq

Genomic Coordinates Forward (+)

49277395 .. 49277640

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0342100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAAGTGCTTCCCCTCATCTTTGACCAGGCCTGCAACTGCGGCTGGGGCAGCAGTCTCTCTCTTTAGTGATTATGAATGTGGAGTCGATGACAGTGGTGATTGTGGCAAAGGTGCTTTAAATCAGGAGTACGTCTCTGATTTGCAATGGGTGGCAGCAGCGAACGTCCATGGTGTTGGTGATTCGGTGAAGATGATTCCTAGTGCTCGGGGCTGGGATGACGATCAGGTGGCGATGGCCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

81

Amino Acids

8.42

Weight (kDa)

4.23

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25735
fragaria_vesca	FvH4_1g05060 FvH4_2g36280
malus_domestica	MD17G1194700.v1.1
prunus_persica	Prupe.1G454200_v2.0.a1 Prupe.3G070700_v2.0.a1 Prupe.7G229300_v2.0.a1
pyrus_communis	pycom08g10060 pycom08g10080
rosa_chinensis	RchiOBHm_Chr2g0090671 RchiOBHm_Chr2g0137921 RchiOBHm_Chr6g0305601
rosa_laevigata	RLG00000010873 RLG00000016135 RLG00000019690
rosa_multiflora	Rmu_co8195442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106650 Rroxscaffold_7G00162540
rosa_rugosa	Rorug02G0009900 Rorug02G0348100 Rorug06G0342100
rosa_samantha	Rh6AG454000
rosa_wichuraiana	Rw6G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	2 cut(s)	61, 139
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	2 cut(s)	29, 237
ApeKI	GCWGC	3 cut(s)	50, 155, 158
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	3 cut(s)	110, 191, 199
AvaI	CYCGRG	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	62, 167, 170
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	61, 139
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	4 cut(s)	42, 51, 156, 159
BlsI	GCNGC	4 cut(s)	43, 52, 157, 160
Bme1390I	CCNGG	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	62, 167, 170
BseYI	CCCAGC	2 cut(s)	44, 213
BshFI	GGCC	2 cut(s)	31, 239
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	61, 139
BsmBI	CGTCTC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	31, 239
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	31, 239
BsrDI	GCAATG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	61, 139
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 47, 50
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	62, 167, 170
BstXI	CCANNNNNNTGG	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	31, 239
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	4 cut(s)	31, 44, 213, 239
CviKI_1	RGCY	4 cut(s)	31, 44, 213, 239
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DraI	TTTAAA	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	1 cut(s)	173
FaiI	YATR	2 cut(s)	75, 171
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	42, 51, 156, 159
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	4 cut(s)	42, 51, 156, 159
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	4 cut(s)	42, 51, 156, 159
GsaI	CCCAGC	2 cut(s)	48, 217
HaeIII	GGCC	2 cut(s)	31, 239
Hin1II	CATG	1 cut(s)	173
HinfI	GANTC	3 cut(s)	84, 182, 196
HphI	GGTGA	3 cut(s)	110, 191, 199
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	2 cut(s)	132, 165
HpyCH4V	TGCA	2 cut(s)	35, 145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 47, 50
HpySE526I	ACGT	2 cut(s)	132, 165
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	7 cut(s)	13, 30, 40, 45, 110, 199, 212
Lsp1109I	GCAGC	3 cut(s)	62, 167, 170
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	132, 165
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	41, 47, 50
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	182, 196
PkrI	GCNGC	4 cut(s)	43, 52, 157, 160
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	26
PspFI	CCCAGC	2 cut(s)	44, 213
PspGI	CCWGG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	4 cut(s)	42, 51, 156, 159
Sau3AI	GATC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	4 cut(s)	115, 135, 168, 231
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	2 cut(s)	135, 168
TaqI	TCGA	1 cut(s)	87
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	182, 196
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	3 cut(s)	50, 155, 158
TspDTI	ATGAA	2 cut(s)	17, 90
TspRI	CASTG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.