Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008399

Physical Location & Seq

Genomic Coordinates Forward (+)

5013318 .. 5021969

Gene Structure 8652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACGTCGTATTCAATTATCCAGCAGACAAAACTAGCTGCAATTATGCTTCTTGTCTTCTTGTTCTGCTACACACGGAATGTGATAAAAAGAGAGGTTCCCATGCAGCTAGCAAAGGATGACTCCTTCGGCTCAATGGGGATCAAAGAGTGGTATGGTTCACGCAGTCCAACTCCAAGCATCAGGTTGGGAGAGCCAAGCACTACGTACACCAAGGCTCAACCAAAGTGGCAAATTTTTTTGAAGAAACTCAAGAAGGAGAAGAAGAAGAGTTTCAGTTCTGGTACTGTTCTATCGCATTCGCAGCAGACTAGTTATGATCCCAAAACATACTCAAAGAATTTTGATAGAGGAATGGGGTGGACAGAGCCTGATAACTTATCGAGGTCTTTCACAGCTCGGTTTGCTAATCCATCAAGGGTTCTATATAGGAATGATTTATTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

149

Amino Acids

17.18

Weight (kDa)

9.92

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25735
fragaria_vesca	FvH4_1g05060 FvH4_2g36280
malus_domestica	MD17G1194700.v1.1
prunus_persica	Prupe.1G454200_v2.0.a1 Prupe.3G070700_v2.0.a1 Prupe.7G229300_v2.0.a1
pyrus_communis	pycom08g10060 pycom08g10080
rosa_chinensis	RchiOBHm_Chr2g0090671 RchiOBHm_Chr2g0137921 RchiOBHm_Chr6g0305601
rosa_laevigata	RLG00000010873 RLG00000016135 RLG00000019690
rosa_multiflora	Rmu_co8195442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106650 Rroxscaffold_7G00162540
rosa_rugosa	Rorug02G0009900 Rorug02G0348100 Rorug06G0342100
rosa_samantha	Rh6AG454000
rosa_wichuraiana	Rw6G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	149, 314
AcsI	RAATTY	2 cut(s)	234, 340
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	209, 286
AgsI	TTSAA	2 cut(s)	15, 244
AhlI	ACTAGT	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	1 cut(s)	425
AluBI	AGCT	3 cut(s)	38, 109, 398
AluI	AGCT	3 cut(s)	38, 109, 398
AlwI	GGATC	2 cut(s)	149, 314
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	38, 106, 304
ApoI	RAATTY	2 cut(s)	234, 340
Asp700I	GAANNNNTTC	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	25, 118, 316
BccI	CCATC	1 cut(s)	421
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	3 cut(s)	35, 110, 312
BisI	GCNGC	3 cut(s)	39, 107, 305
BlsI	GCNGC	3 cut(s)	40, 108, 306
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	189
BmtI	GCTAGC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	25, 118, 316
BsmI	GAATGC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	141, 319
BspLI	GGNNCC	1 cut(s)	99
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	149, 314
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	141, 319
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	144, 322
BstMBI	GATC	2 cut(s)	141, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 404
BstSNI	TACGTA	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	25, 118, 316
BstV2I	GAAGAC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	208, 285
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	7 cut(s)	38, 109, 132, 196, 218, 370, 398
CviKI_1	RGCY	7 cut(s)	38, 109, 132, 196, 218, 370, 398
CviQI	GTAC	2 cut(s)	208, 285
DpnI	GATC	2 cut(s)	143, 321
DpnII	GATC	2 cut(s)	141, 319
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco105I	TACGTA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	106
FaiI	YATR	7 cut(s)	47, 104, 156, 318, 331, 427, 429
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	39, 107, 305
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	39, 107, 305
FspBI	CTAG	3 cut(s)	35, 110, 312
GluI	GCNGC	3 cut(s)	39, 107, 305
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	161, 210, 363
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	3 cut(s)	161, 210, 363
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	136, 250
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	5, 206
HpyCH4V	TGCA	2 cut(s)	41, 106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 404
HpySE526I	ACGT	2 cut(s)	5, 206
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	141, 319
LpnPI	CCDG	4 cut(s)	35, 169, 267, 384
Lsp1109I	GCAGC	3 cut(s)	25, 118, 316
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	3 cut(s)	35, 110, 312
MaeII	ACGT	2 cut(s)	5, 206
MalI	GATC	2 cut(s)	143, 321
MboI	GATC	2 cut(s)	141, 319
MboII	GAAGA	5 cut(s)	49, 256, 274, 277, 280
MluCI	AATT	4 cut(s)	15, 42, 234, 340
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	88, 344, 378
MroXI	GAANNNNTTC	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	304, 404
NdeII	GATC	2 cut(s)	141, 319
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	40, 108, 306
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	371
RsaI	GTAC	2 cut(s)	209, 286
RsaNI	GTAC	2 cut(s)	208, 285
SatI	GCNGC	3 cut(s)	39, 107, 305
Sau3AI	GATC	2 cut(s)	141, 319
SchI	GAGTC	1 cut(s)	116
SetI	ASST	8 cut(s)	8, 40, 99, 111, 188, 209, 389, 400
SfaNI	GCATC	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SnaBI	TACGTA	1 cut(s)	207
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	4 cut(s)	15, 42, 234, 340
SspMI	CTAG	3 cut(s)	35, 110, 312
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	8, 209
TaqI	TCGA	1 cut(s)	383
TasI	AATT	4 cut(s)	15, 42, 234, 340
TseI	GCWGC	3 cut(s)	38, 106, 304
TspGWI	ACGGA	1 cut(s)	91
XapI	RAATTY	2 cut(s)	234, 340
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	35, 110, 312
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.