Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008399

Physical Location & Seq

Genomic Coordinates Forward (+)

8409049 .. 8409366

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGCATCAGAGAGTGGAGAAATTCACGCAGCCAAAGCATAAGGCTGGGACACAACTACGACATGCCAAGCAACTACAACAAGTCTCAACCAGGGTGGCAAAAATTCTGGAAACGATTCAAGATCGAGAGGAAAAAAAATTTCGGTTCAAGTACTGTCACGCCGCAGGCGCAGACGTCTTATGATCCGGAAACATATTCGAAGAATTTTGATCAAGGGACGGGATGGATGGAGCCGGATAACTTGCCCCGGTCTTTCTCAGCTCGTTTTGCTGATCCTTCTAGGGTTTTGCATGGCAATAGGAATTTACTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

106

Amino Acids

12.37

Weight (kDa)

10.06

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25735
fragaria_vesca	FvH4_1g05060 FvH4_2g36280
malus_domestica	MD17G1194700.v1.1
prunus_persica	Prupe.1G454200_v2.0.a1 Prupe.3G070700_v2.0.a1 Prupe.7G229300_v2.0.a1
pyrus_communis	pycom08g10060 pycom08g10080
rosa_chinensis	RchiOBHm_Chr2g0090671 RchiOBHm_Chr2g0137921 RchiOBHm_Chr6g0305601
rosa_laevigata	RLG00000010873 RLG00000016135 RLG00000019690
rosa_multiflora	Rmu_co8195442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106650 Rroxscaffold_7G00162540
rosa_rugosa	Rorug02G0009900 Rorug02G0348100 Rorug06G0342100
rosa_samantha	Rh6AG454000
rosa_wichuraiana	Rw6G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	179, 269
AcsI	RAATTY	5 cut(s)	22, 104, 139, 205, 304
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	121, 150
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	179, 269
Aor13HI	TCCGGA	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	5 cut(s)	22, 104, 139, 205, 304
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	2 cut(s)	219, 223
BciT130I	CCWGG	1 cut(s)	93
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	31, 164
BlsI	GCNGC	2 cut(s)	32, 165
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	93, 250
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	93, 250
BmsI	GCATC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	92, 248
BsaWI	WCCGGW	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	92, 248
BseGI	GGATG	2 cut(s)	230, 234
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	188, 236, 250
BslFI	GGGAC	2 cut(s)	63, 232
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	63, 232
Bsp119I	TTCGAA	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	123, 184, 211, 274
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	272
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	179, 269
BspT104I	TTCGAA	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	92, 248
BssMI	GATC	4 cut(s)	123, 184, 211, 274
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	230, 234
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	4 cut(s)	126, 187, 214, 277
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	4 cut(s)	123, 184, 211, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 169, 269
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	91, 248
BstV1I	GCAGC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	230, 234
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	2 cut(s)	64, 293
CviJI	RGCY	4 cut(s)	33, 46, 235, 263
CviKI_1	RGCY	4 cut(s)	33, 46, 235, 263
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	4 cut(s)	125, 186, 213, 276
DpnII	GATC	4 cut(s)	123, 184, 211, 274
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	67, 296
FaiI	YATR	5 cut(s)	41, 65, 183, 196, 294
FaqI	GGGAC	2 cut(s)	63, 232
FatI	CATG	2 cut(s)	63, 292
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	31, 164
FokI	GGATG	2 cut(s)	237, 241
Fsp4HI	GCNGC	2 cut(s)	31, 164
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	2 cut(s)	31, 164
GsaI	CCCAGC	1 cut(s)	50
HapII	CCGG	3 cut(s)	188, 236, 250
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	67, 296
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	3 cut(s)	188, 236, 250
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	4 cut(s)	109, 121, 127, 188
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 169, 269
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	67, 296
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	123, 184, 211, 274
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	9 cut(s)	32, 78, 94, 105, 152, 201, 249, 263, 296
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	125, 186, 213, 276
MboI	GATC	4 cut(s)	123, 184, 211, 274
MboII	GAAGA	1 cut(s)	214
MluCI	AATT	5 cut(s)	22, 104, 139, 205, 304
MnlI	CCTC	1 cut(s)	123
MroI	TCCGGA	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	116
MspI	CCGG	3 cut(s)	188, 236, 250
MspR9I	CCNGG	2 cut(s)	93, 250
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	36, 169, 269
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	4 cut(s)	123, 184, 211, 274
NlaIII	CATG	2 cut(s)	67, 296
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	32, 165
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SatI	GCNGC	2 cut(s)	31, 164
Sau3AI	GATC	4 cut(s)	123, 184, 211, 274
ScaI	AGTACT	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	93, 250
SetI	ASST	2 cut(s)	179, 265
SfaNI	GCATC	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	200
Sse9I	AATT	5 cut(s)	22, 104, 139, 205, 304
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	91, 248
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	126, 200
TasI	AATT	5 cut(s)	22, 104, 139, 205, 304
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	157
XapI	RAATTY	5 cut(s)	22, 104, 139, 205, 304
XceI	RCATGY	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.