BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 8 |
| AccBSI | CCGCTC | 1 cut(s) | 635 |
| AciI | CCGC | 3 cut(s) | 120, 403, 633 |
| AclI | AACGTT | 1 cut(s) | 181 |
| AclWI | GGATC | 2 cut(s) | 131, 571 |
| AcuI | CTGAAG | 1 cut(s) | 804 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 28 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 53 |
| AflIII | ACRYGT | 2 cut(s) | 249, 500 |
| AgsI | TTSAA | 3 cut(s) | 453, 653, 684 |
| AhlI | ACTAGT | 1 cut(s) | 410 |
| AjiI | CACGTC | 1 cut(s) | 34 |
| AjnI | CCWGG | 1 cut(s) | 52 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 121, 153 |
| AluBI | AGCT | 3 cut(s) | 80, 279, 384 |
| AluI | AGCT | 3 cut(s) | 80, 279, 384 |
| Alw26I | GTCTC | 6 cut(s) | 40, 225, 264, 555, 793, 820 |
| AlwI | GGATC | 2 cut(s) | 131, 571 |
| Ama87I | CYCGRG | 1 cut(s) | 395 |
| ApeKI | GCWGC | 1 cut(s) | 527 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 135, 167 |
| AspS9I | GGNCC | 2 cut(s) | 358, 692 |
| AsuHPI | GGTGA | 5 cut(s) | 414, 453, 465, 629, 722 |
| AvaI | CYCGRG | 1 cut(s) | 395 |
| AvaII | GGWCC | 2 cut(s) | 358, 692 |
| BbsI | GAAGAC | 2 cut(s) | 150, 336 |
| BbvI | GCAGC | 1 cut(s) | 539 |
| BccI | CCATC | 1 cut(s) | 595 |
| BceAI | ACGGC | 1 cut(s) | 100 |
| BciT130I | CCWGG | 1 cut(s) | 54 |
| BcoDI | GTCTC | 6 cut(s) | 40, 225, 264, 555, 793, 820 |
| BcuI | ACTAGT | 1 cut(s) | 410 |
| BfaI | CTAG | 3 cut(s) | 381, 411, 792 |
| BisI | GCNGC | 2 cut(s) | 403, 528 |
| BlsI | GCNGC | 2 cut(s) | 404, 529 |
| Bme1390I | CCNGG | 1 cut(s) | 54 |
| Bme18I | GGWCC | 2 cut(s) | 358, 692 |
| BmeT110I | CYCGRG | 1 cut(s) | 395 |
| BmgBI | CACGTC | 1 cut(s) | 34 |
| BmgT120I | GGNCC | 2 cut(s) | 358, 692 |
| BmiI | GGNNCC | 2 cut(s) | 360, 693 |
| BmrFI | CCNGG | 1 cut(s) | 54 |
| BmrI | ACTGGG | 1 cut(s) | 591 |
| BmuI | ACTGGG | 1 cut(s) | 591 |
| BpiI | GAAGAC | 2 cut(s) | 150, 336 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 619, 651 |
| BpmI | CTGGAG | 1 cut(s) | 246 |
| BpuEI | CTTGAG | 1 cut(s) | 643 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 53 |
| Bse1I | ACTGG | 3 cut(s) | 92, 416, 597 |
| BseBI | CCWGG | 1 cut(s) | 54 |
| BseGI | GGATG | 2 cut(s) | 301, 726 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BseMII | CTCAG | 3 cut(s) | 188, 264, 655 |
| BseNI | ACTGG | 3 cut(s) | 92, 416, 597 |
| BseRI | GAGGAG | 1 cut(s) | 640 |
| BseXI | GCAGC | 1 cut(s) | 539 |
| BsiHKCI | CYCGRG | 1 cut(s) | 395 |
| BslFI | GGGAC | 1 cut(s) | 705 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BsmAI | GTCTC | 6 cut(s) | 40, 225, 264, 555, 793, 820 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsmFI | GGGAC | 1 cut(s) | 705 |
| BsoBI | CYCGRG | 1 cut(s) | 395 |
| Bsp143I | GATC | 3 cut(s) | 136, 516, 563 |
| BspACI | CCGC | 3 cut(s) | 120, 403, 633 |
| BspCNI | CTCAG | 3 cut(s) | 187, 265, 654 |
| BspLI | GGNNCC | 2 cut(s) | 360, 693 |
| BspPI | GGATC | 2 cut(s) | 131, 571 |
| BsrBI | CCGCTC | 1 cut(s) | 635 |
| BsrI | ACTGG | 3 cut(s) | 92, 416, 597 |
| BssMI | GATC | 3 cut(s) | 136, 516, 563 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 1 cut(s) | 54 |
| Bst4CI | ACNGT | 5 cut(s) | 226, 270, 471, 549, 710 |
| Bst6I | CTCTTC | 1 cut(s) | 708 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 376 |
| BstDEI | CTNAG | 5 cut(s) | 174, 188, 273, 641, 729 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 51 |
| BstF5I | GGATG | 2 cut(s) | 301, 726 |
| BstKTI | GATC | 3 cut(s) | 139, 519, 566 |
| BstMAI | GTCTC | 6 cut(s) | 40, 225, 264, 555, 793, 820 |
| BstMBI | GATC | 3 cut(s) | 136, 516, 563 |
| BstNI | CCWGG | 1 cut(s) | 54 |
| BstNSI | RCATGY | 2 cut(s) | 253, 504 |
| BstSCI | CCNGG | 1 cut(s) | 52 |
| BstV1I | GCAGC | 1 cut(s) | 539 |
| BstV2I | GAAGAC | 2 cut(s) | 150, 336 |
| BstX2I | RGATCY | 1 cut(s) | 136 |
| BstYI | RGATCY | 1 cut(s) | 136 |
| BtgZI | GCGATG | 2 cut(s) | 372, 576 |
| BtrI | CACGTC | 1 cut(s) | 34 |
| BtsCI | GGATG | 2 cut(s) | 301, 726 |
| BtsIMutI | CAGTG | 1 cut(s) | 604 |
| Cac8I | GCNNGC | 1 cut(s) | 376 |
| Cfr13I | GGNCC | 2 cut(s) | 358, 692 |
| Csp6I | GTAC | 1 cut(s) | 27 |
| CviAII | CATG | 6 cut(s) | 250, 322, 501, 514, 669, 823 |
| CviJI | RGCY | 7 cut(s) | 80, 88, 203, 279, 384, 402, 753 |
| CviKI_1 | RGCY | 7 cut(s) | 80, 88, 203, 279, 384, 402, 753 |
| CviQI | GTAC | 1 cut(s) | 27 |
| DdeI | CTNAG | 5 cut(s) | 174, 188, 273, 641, 729 |
| DpnI | GATC | 3 cut(s) | 138, 518, 565 |
| DpnII | GATC | 3 cut(s) | 136, 516, 563 |
| DraI | TTTAAA | 1 cut(s) | 213 |
| Eam1104I | CTCTTC | 1 cut(s) | 708 |
| EarI | CTCTTC | 1 cut(s) | 708 |
| Eco32I | GATATC | 3 cut(s) | 102, 604, 772 |
| Eco47I | GGWCC | 2 cut(s) | 358, 692 |
| Eco57I | CTGAAG | 1 cut(s) | 804 |
| Eco88I | CYCGRG | 1 cut(s) | 395 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 51 |
| EcoO109I | RGGNCCY | 1 cut(s) | 358 |
| EcoRII | CCWGG | 1 cut(s) | 52 |
| EcoRV | GATATC | 3 cut(s) | 102, 604, 772 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 6 cut(s) | 253, 325, 504, 517, 672, 826 |
| FaqI | GGGAC | 1 cut(s) | 705 |
| FatI | CATG | 6 cut(s) | 249, 321, 500, 513, 668, 822 |
| FauI | CCCGC | 1 cut(s) | 113 |
| Fnu4HI | GCNGC | 2 cut(s) | 403, 528 |
| FokI | GGATG | 2 cut(s) | 308, 733 |
| Fsp4HI | GCNGC | 2 cut(s) | 403, 528 |
| FspBI | CTAG | 3 cut(s) | 381, 411, 792 |
| GluI | GCNGC | 2 cut(s) | 403, 528 |
| GsuI | CTGGAG | 1 cut(s) | 246 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 6 cut(s) | 253, 325, 504, 517, 672, 826 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HinfI | GANTC | 4 cut(s) | 233, 257, 332, 348 |
| HphI | GGTGA | 5 cut(s) | 414, 453, 465, 629, 722 |
| Hpy166II | GTNNAC | 1 cut(s) | 247 |
| Hpy188I | TCNGA | 6 cut(s) | 99, 177, 274, 328, 337, 568 |
| Hpy188III | TCNNGA | 4 cut(s) | 47, 140, 158, 690 |
| Hpy8I | GTNNAC | 1 cut(s) | 247 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 3 cut(s) | 176, 569, 573 |
| HpyCH4III | ACNGT | 5 cut(s) | 226, 270, 471, 549, 710 |
| HpyCH4IV | ACGT | 3 cut(s) | 5, 33, 181 |
| HpyCH4V | TGCA | 1 cut(s) | 527 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 188, 273, 641, 729 |
| HpySE526I | ACGT | 3 cut(s) | 5, 33, 181 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 6 cut(s) | 253, 325, 504, 517, 672, 826 |
| Kzo9I | GATC | 3 cut(s) | 136, 516, 563 |
| Lsp1109I | GCAGC | 1 cut(s) | 539 |
| MaeI | CTAG | 3 cut(s) | 381, 411, 792 |
| MaeII | ACGT | 3 cut(s) | 5, 33, 181 |
| MaeIII | GTNAC | 3 cut(s) | 63, 471, 617 |
| MalI | GATC | 3 cut(s) | 138, 518, 565 |
| MbiI | CCGCTC | 1 cut(s) | 635 |
| MboI | GATC | 3 cut(s) | 136, 516, 563 |
| MboII | GAAGA | 6 cut(s) | 155, 341, 725, 752, 755, 779 |
| MflI | RGATCY | 1 cut(s) | 136 |
| MluCI | AATT | 1 cut(s) | 39 |
| MlyI | GAGTC | 3 cut(s) | 227, 266, 326 |
| MmeI | TCCRAC | 1 cut(s) | 41 |
| MseI | TTAA | 1 cut(s) | 212 |
| MslI | CAYNNNNRTG | 4 cut(s) | 294, 499, 615, 667 |
| MspR9I | CCNGG | 1 cut(s) | 54 |
| MssI | GTTTAAAC | 1 cut(s) | 213 |
| MvaI | CCWGG | 1 cut(s) | 54 |
| NdeII | GATC | 3 cut(s) | 136, 516, 563 |
| NlaIII | CATG | 6 cut(s) | 253, 325, 504, 517, 672, 826 |
| NlaIV | GGNNCC | 2 cut(s) | 360, 693 |
| NmuCI | GTSAC | 3 cut(s) | 63, 471, 617 |
| NspI | RCATGY | 2 cut(s) | 253, 504 |
| PciI | ACATGT | 2 cut(s) | 249, 500 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 341 |
| PfeI | GAWTC | 1 cut(s) | 348 |
| PflFI | GACNNNGTC | 2 cut(s) | 7, 149 |
| PkrI | GCNGC | 2 cut(s) | 404, 529 |
| PleI | GAGTC | 3 cut(s) | 227, 265, 326 |
| PmeI | GTTTAAAC | 1 cut(s) | 213 |
| PpsI | GAGTC | 3 cut(s) | 227, 265, 326 |
| PpuMI | RGGWCCY | 1 cut(s) | 358 |
| PscI | ACATGT | 2 cut(s) | 249, 500 |
| Psp1406I | AACGTT | 1 cut(s) | 181 |
| Psp5II | RGGWCCY | 1 cut(s) | 358 |
| Psp6I | CCWGG | 1 cut(s) | 52 |
| PspGI | CCWGG | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 2 cut(s) | 360, 693 |
| PspPI | GGNCC | 2 cut(s) | 358, 692 |
| PspPPI | RGGWCCY | 1 cut(s) | 358 |
| PsuI | RGATCY | 1 cut(s) | 136 |
| PsyI | GACNNNGTC | 2 cut(s) | 7, 149 |
| RsaI | GTAC | 1 cut(s) | 28 |
| RsaNI | GTAC | 1 cut(s) | 27 |
| RseI | CAYNNNNRTG | 4 cut(s) | 294, 499, 615, 667 |
| SaqAI | TTAA | 1 cut(s) | 212 |
| SatI | GCNGC | 2 cut(s) | 403, 528 |
| Sau3AI | GATC | 3 cut(s) | 136, 516, 563 |
| Sau96I | GGNCC | 2 cut(s) | 358, 692 |
| SchI | GAGTC | 3 cut(s) | 227, 266, 326 |
| ScrFI | CCNGG | 1 cut(s) | 54 |
| SinI | GGWCC | 2 cut(s) | 358, 692 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 294, 499, 615, 667 |
| SmlI | CTYRAG | 1 cut(s) | 622 |
| SmoI | CTYRAG | 1 cut(s) | 622 |
| SpeI | ACTAGT | 1 cut(s) | 410 |
| Sse9I | AATT | 1 cut(s) | 39 |
| SsiI | CCGC | 3 cut(s) | 120, 403, 633 |
| SspI | AATATT | 1 cut(s) | 703 |
| SspMI | CTAG | 3 cut(s) | 381, 411, 792 |
| StyD4I | CCNGG | 1 cut(s) | 52 |
| TaaI | ACNGT | 5 cut(s) | 226, 270, 471, 549, 710 |
| TaiI | ACGT | 3 cut(s) | 8, 36, 184 |
| TaqI | TCGA | 1 cut(s) | 159 |
| TasI | AATT | 1 cut(s) | 39 |
| TauI | GCSGC | 1 cut(s) | 405 |
| TfiI | GAWTC | 1 cut(s) | 348 |
| Tru1I | TTAA | 1 cut(s) | 212 |
| Tru9I | TTAA | 1 cut(s) | 212 |
| TscAI | CASTG | 1 cut(s) | 604 |
| TseFI | GTSAC | 3 cut(s) | 63, 471, 617 |
| TseI | GCWGC | 1 cut(s) | 527 |
| Tsp45I | GTSAC | 3 cut(s) | 63, 471, 617 |
| TspGWI | ACGGA | 1 cut(s) | 231 |
| TspRI | CASTG | 1 cut(s) | 604 |
| Tth111I | GACNNNGTC | 2 cut(s) | 7, 149 |
| VpaK11BI | GGWCC | 2 cut(s) | 358, 692 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 51 |
| XceI | RCATGY | 2 cut(s) | 253, 504 |
| XspI | CTAG | 3 cut(s) | 381, 411, 792 |
| ZraI | GACGTC | 1 cut(s) | 6 |