BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 453 |
| AccB1I | GGYRCC | 1 cut(s) | 453 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 470 |
| AccBSI | CCGCTC | 2 cut(s) | 20, 268 |
| AciI | CCGC | 3 cut(s) | 20, 132, 266 |
| AclWI | GGATC | 2 cut(s) | 161, 257 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AdeI | CACNNNGTG | 1 cut(s) | 596 |
| AfaI | GTAC | 1 cut(s) | 455 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 470 |
| AflII | CTTAAG | 1 cut(s) | 619 |
| AflIII | ACRYGT | 1 cut(s) | 399 |
| AgsI | TTSAA | 5 cut(s) | 244, 483, 535, 716, 817 |
| AhlI | ACTAGT | 1 cut(s) | 494 |
| AluBI | AGCT | 3 cut(s) | 54, 516, 614 |
| AluI | AGCT | 3 cut(s) | 54, 516, 614 |
| Alw21I | GWGCWC | 3 cut(s) | 56, 425, 523 |
| Alw26I | GTCTC | 1 cut(s) | 445 |
| AlwI | GGATC | 2 cut(s) | 161, 257 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 809 |
| AoxI | GGCC | 1 cut(s) | 728 |
| ApeKI | GCWGC | 2 cut(s) | 629, 872 |
| Asp718I | GGTACC | 1 cut(s) | 453 |
| AspS9I | GGNCC | 1 cut(s) | 671 |
| AsuHPI | GGTGA | 9 cut(s) | 75, 81, 87, 93, 99, 105, 339, 582, 791 |
| AvaII | GGWCC | 1 cut(s) | 671 |
| BanI | GGYRCC | 1 cut(s) | 453 |
| BanII | GRGCYC | 1 cut(s) | 56 |
| Bbv12I | GWGCWC | 3 cut(s) | 56, 425, 523 |
| BbvI | GCAGC | 2 cut(s) | 616, 859 |
| BccI | CCATC | 8 cut(s) | 94, 100, 106, 112, 118, 130, 592, 685 |
| BcoDI | GTCTC | 1 cut(s) | 445 |
| BcuI | ACTAGT | 1 cut(s) | 494 |
| BfaI | CTAG | 4 cut(s) | 237, 432, 495, 594 |
| BfmI | CTRYAG | 1 cut(s) | 873 |
| BfrI | CTTAAG | 1 cut(s) | 619 |
| BisI | GCNGC | 2 cut(s) | 630, 873 |
| BlsI | GCNGC | 2 cut(s) | 631, 874 |
| Bme18I | GGWCC | 1 cut(s) | 671 |
| BmgT120I | GGNCC | 1 cut(s) | 671 |
| BmiI | GGNNCC | 2 cut(s) | 455, 673 |
| BmrI | ACTGGG | 1 cut(s) | 480 |
| BmsI | GCATC | 5 cut(s) | 143, 149, 155, 242, 511 |
| BmuI | ACTGGG | 1 cut(s) | 480 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 252, 284 |
| BsaBI | GATNNNNATC | 1 cut(s) | 583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 389, 419 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 470 |
| Bse1I | ACTGG | 2 cut(s) | 437, 475 |
| Bse8I | GATNNNNATC | 1 cut(s) | 583 |
| BseGI | GGATG | 4 cut(s) | 331, 502, 843, 856 |
| BseJI | GATNNNNATC | 1 cut(s) | 583 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 470 |
| BseMII | CTCAG | 5 cut(s) | 232, 378, 624, 657, 816 |
| BseNI | ACTGG | 2 cut(s) | 437, 475 |
| BseRI | GAGGAG | 2 cut(s) | 397, 737 |
| BseXI | GCAGC | 2 cut(s) | 616, 859 |
| BsgI | GTGCAG | 2 cut(s) | 615, 668 |
| BshFI | GGCC | 1 cut(s) | 730 |
| BshNI | GGYRCC | 1 cut(s) | 453 |
| BsiHKAI | GWGCWC | 3 cut(s) | 56, 425, 523 |
| BslFI | GGGAC | 3 cut(s) | 532, 657, 874 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 470 |
| BsmAI | GTCTC | 1 cut(s) | 445 |
| BsmFI | GGGAC | 3 cut(s) | 532, 657, 874 |
| BsnI | GGCC | 1 cut(s) | 730 |
| Bsp1286I | GDGCHC | 3 cut(s) | 56, 425, 523 |
| Bsp143I | GATC | 3 cut(s) | 166, 225, 262 |
| BspACI | CCGC | 3 cut(s) | 20, 132, 266 |
| BspANI | GGCC | 1 cut(s) | 730 |
| BspCNI | CTCAG | 5 cut(s) | 231, 377, 623, 656, 815 |
| BspLI | GGNNCC | 2 cut(s) | 455, 673 |
| BspMAI | CTGCAG | 1 cut(s) | 877 |
| BspPI | GGATC | 2 cut(s) | 161, 257 |
| BspT107I | GGYRCC | 1 cut(s) | 453 |
| BspTI | CTTAAG | 1 cut(s) | 619 |
| BsrBI | CCGCTC | 2 cut(s) | 20, 268 |
| BsrI | ACTGG | 2 cut(s) | 437, 475 |
| BssMI | GATC | 3 cut(s) | 166, 225, 262 |
| Bst4CI | ACNGT | 2 cut(s) | 256, 546 |
| BstAFI | CTTAAG | 1 cut(s) | 619 |
| BstDEI | CTNAG | 6 cut(s) | 218, 337, 364, 610, 643, 802 |
| BstF5I | GGATG | 4 cut(s) | 331, 502, 843, 856 |
| BstKTI | GATC | 3 cut(s) | 169, 228, 265 |
| BstMAI | GTCTC | 1 cut(s) | 445 |
| BstMBI | GATC | 3 cut(s) | 166, 225, 262 |
| BstSFI | CTRYAG | 1 cut(s) | 873 |
| BstV1I | GCAGC | 2 cut(s) | 616, 859 |
| BstX2I | RGATCY | 2 cut(s) | 166, 262 |
| BstYI | RGATCY | 2 cut(s) | 166, 262 |
| BsuRI | GGCC | 1 cut(s) | 730 |
| BtsCI | GGATG | 4 cut(s) | 331, 502, 843, 856 |
| BtsIMutI | CAGTG | 1 cut(s) | 651 |
| CaiI | CAGNNNCTG | 1 cut(s) | 809 |
| Cfr13I | GGNCC | 1 cut(s) | 671 |
| CseI | GACGC | 1 cut(s) | 29 |
| Csp6I | GTAC | 1 cut(s) | 454 |
| CviAII | CATG | 6 cut(s) | 229, 283, 310, 416, 732, 831 |
| CviJI | RGCY | 6 cut(s) | 54, 516, 561, 614, 629, 730 |
| CviKI_1 | RGCY | 6 cut(s) | 54, 516, 561, 614, 629, 730 |
| CviQI | GTAC | 1 cut(s) | 454 |
| DdeI | CTNAG | 6 cut(s) | 218, 337, 364, 610, 643, 802 |
| DpnI | GATC | 3 cut(s) | 168, 227, 264 |
| DpnII | GATC | 3 cut(s) | 166, 225, 262 |
| DraIII | CACNNNGTG | 1 cut(s) | 596 |
| Ecl136II | GAGCTC | 1 cut(s) | 54 |
| Eco24I | GRGCYC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 671 |
| Eco53kI | GAGCTC | 1 cut(s) | 54 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| EcoICRI | GAGCTC | 1 cut(s) | 54 |
| EcoT38I | GRGCYC | 1 cut(s) | 56 |
| FaeI | CATG | 6 cut(s) | 232, 286, 313, 419, 735, 834 |
| FaqI | GGGAC | 3 cut(s) | 532, 657, 874 |
| FatI | CATG | 6 cut(s) | 228, 282, 309, 415, 731, 830 |
| FauI | CCCGC | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 2 cut(s) | 630, 873 |
| FokI | GGATG | 4 cut(s) | 338, 489, 850, 863 |
| FriOI | GRGCYC | 1 cut(s) | 56 |
| Fsp4HI | GCNGC | 2 cut(s) | 630, 873 |
| FspBI | CTAG | 4 cut(s) | 237, 432, 495, 594 |
| GluI | GCNGC | 2 cut(s) | 630, 873 |
| HaeIII | GGCC | 1 cut(s) | 730 |
| HgaI | GACGC | 1 cut(s) | 29 |
| Hin1II | CATG | 6 cut(s) | 232, 286, 313, 419, 735, 834 |
| HincII | GTYRAC | 2 cut(s) | 554, 690 |
| HindII | GTYRAC | 2 cut(s) | 554, 690 |
| HinfI | GANTC | 7 cut(s) | 8, 287, 362, 371, 566, 579, 862 |
| HphI | GGTGA | 9 cut(s) | 75, 81, 87, 93, 99, 105, 339, 582, 791 |
| Hpy166II | GTNNAC | 3 cut(s) | 184, 554, 690 |
| Hpy188I | TCNGA | 7 cut(s) | 67, 304, 358, 367, 565, 571, 805 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 150, 170 |
| Hpy8I | GTNNAC | 3 cut(s) | 184, 554, 690 |
| HpyAV | CCTTC | 4 cut(s) | 438, 489, 516, 710 |
| HpyCH4III | ACNGT | 2 cut(s) | 256, 546 |
| HpyCH4IV | ACGT | 1 cut(s) | 401 |
| HpyCH4V | TGCA | 8 cut(s) | 140, 146, 296, 320, 632, 649, 834, 875 |
| HpyF3I | CTNAG | 6 cut(s) | 218, 337, 364, 610, 643, 802 |
| HpySE526I | ACGT | 1 cut(s) | 401 |
| Hsp92II | CATG | 6 cut(s) | 232, 286, 313, 419, 735, 834 |
| KpnI | GGTACC | 1 cut(s) | 457 |
| Kzo9I | GATC | 3 cut(s) | 166, 225, 262 |
| LmnI | GCTCC | 2 cut(s) | 273, 740 |
| Lsp1109I | GCAGC | 2 cut(s) | 616, 859 |
| LweI | GCATC | 5 cut(s) | 143, 149, 155, 242, 511 |
| MaeI | CTAG | 4 cut(s) | 237, 432, 495, 594 |
| MaeII | ACGT | 1 cut(s) | 401 |
| MaeIII | GTNAC | 1 cut(s) | 596 |
| MalI | GATC | 3 cut(s) | 168, 227, 264 |
| MbiI | CCGCTC | 2 cut(s) | 20, 268 |
| MboI | GATC | 3 cut(s) | 166, 225, 262 |
| MboII | GAAGA | 3 cut(s) | 69, 185, 780 |
| MflI | RGATCY | 2 cut(s) | 166, 262 |
| MhlI | GDGCHC | 3 cut(s) | 56, 425, 523 |
| MluCI | AATT | 2 cut(s) | 193, 529 |
| MlyI | GAGTC | 3 cut(s) | 356, 365, 856 |
| MmeI | TCCRAC | 1 cut(s) | 238 |
| MseI | TTAA | 3 cut(s) | 396, 620, 880 |
| MslI | CAYNNNNRTG | 1 cut(s) | 516 |
| MspA1I | CMGCKG | 1 cut(s) | 614 |
| MspCI | CTTAAG | 1 cut(s) | 619 |
| NdeII | GATC | 3 cut(s) | 166, 225, 262 |
| NlaIII | CATG | 6 cut(s) | 232, 286, 313, 419, 735, 834 |
| NlaIV | GGNNCC | 2 cut(s) | 455, 673 |
| NmuCI | GTSAC | 1 cut(s) | 596 |
| PfeI | GAWTC | 4 cut(s) | 8, 287, 566, 579 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 470 |
| PkrI | GCNGC | 2 cut(s) | 631, 874 |
| PleI | GAGTC | 3 cut(s) | 356, 365, 856 |
| PpsI | GAGTC | 3 cut(s) | 356, 365, 856 |
| Psp124BI | GAGCTC | 1 cut(s) | 56 |
| PspN4I | GGNNCC | 2 cut(s) | 455, 673 |
| PspPI | GGNCC | 1 cut(s) | 671 |
| PstI | CTGCAG | 1 cut(s) | 877 |
| PstNI | CAGNNNCTG | 1 cut(s) | 809 |
| PsuI | RGATCY | 2 cut(s) | 166, 262 |
| PvuII | CAGCTG | 1 cut(s) | 614 |
| RsaI | GTAC | 1 cut(s) | 455 |
| RsaNI | GTAC | 1 cut(s) | 454 |
| RseI | CAYNNNNRTG | 1 cut(s) | 516 |
| SacI | GAGCTC | 1 cut(s) | 56 |
| SaqAI | TTAA | 3 cut(s) | 396, 620, 880 |
| SatI | GCNGC | 2 cut(s) | 630, 873 |
| Sau3AI | GATC | 3 cut(s) | 166, 225, 262 |
| Sau96I | GGNCC | 1 cut(s) | 671 |
| SchI | GAGTC | 3 cut(s) | 356, 365, 856 |
| SduI | GDGCHC | 3 cut(s) | 56, 425, 523 |
| SfaNI | GCATC | 5 cut(s) | 143, 149, 155, 242, 511 |
| SfcI | CTRYAG | 1 cut(s) | 873 |
| SinI | GGWCC | 1 cut(s) | 671 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 516 |
| SmlI | CTYRAG | 1 cut(s) | 619 |
| SmoI | CTYRAG | 1 cut(s) | 619 |
| SpeI | ACTAGT | 1 cut(s) | 494 |
| Sse9I | AATT | 2 cut(s) | 193, 529 |
| SsiI | CCGC | 3 cut(s) | 20, 132, 266 |
| SspMI | CTAG | 4 cut(s) | 237, 432, 495, 594 |
| SstI | GAGCTC | 1 cut(s) | 56 |
| TaaI | ACNGT | 2 cut(s) | 256, 546 |
| TaiI | ACGT | 1 cut(s) | 404 |
| TaqI | TCGA | 4 cut(s) | 56, 125, 189, 491 |
| TasI | AATT | 2 cut(s) | 193, 529 |
| TfiI | GAWTC | 4 cut(s) | 8, 287, 566, 579 |
| Tru1I | TTAA | 3 cut(s) | 396, 620, 880 |
| Tru9I | TTAA | 3 cut(s) | 396, 620, 880 |
| TscAI | CASTG | 1 cut(s) | 651 |
| TseFI | GTSAC | 1 cut(s) | 596 |
| TseI | GCWGC | 2 cut(s) | 629, 872 |
| Tsp45I | GTSAC | 1 cut(s) | 596 |
| TspDTI | ATGAA | 7 cut(s) | 17, 21, 63, 69, 758, 774, 857 |
| TspGWI | ACGGA | 1 cut(s) | 435 |
| TspRI | CASTG | 1 cut(s) | 651 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 470 |
| Vha464I | CTTAAG | 1 cut(s) | 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 671 |
| XspI | CTAG | 4 cut(s) | 237, 432, 495, 594 |