BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 393 |
| AccB1I | GGYRCC | 1 cut(s) | 393 |
| AccBSI | CCGCTC | 1 cut(s) | 679 |
| AciI | CCGC | 4 cut(s) | 63, 97, 404, 679 |
| AclWI | GGATC | 1 cut(s) | 101 |
| AcuI | CTGAAG | 2 cut(s) | 132, 693 |
| AdeI | CACNNNGTG | 1 cut(s) | 536 |
| AfaI | GTAC | 2 cut(s) | 395, 436 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 410 |
| AgsI | TTSAA | 3 cut(s) | 184, 432, 668 |
| AluBI | AGCT | 5 cut(s) | 23, 29, 59, 639, 671 |
| AluI | AGCT | 5 cut(s) | 23, 29, 59, 639, 671 |
| Alw26I | GTCTC | 3 cut(s) | 195, 239, 385 |
| AlwI | GGATC | 1 cut(s) | 101 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 761 |
| ApeKI | GCWGC | 7 cut(s) | 29, 53, 56, 65, 456, 484, 569 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 817 |
| Asp718I | GGTACC | 1 cut(s) | 393 |
| AspS9I | GGNCC | 1 cut(s) | 582 |
| AsuC2I | CCSGG | 1 cut(s) | 643 |
| AsuHPI | GGTGA | 2 cut(s) | 279, 522 |
| AvaII | GGWCC | 1 cut(s) | 582 |
| BanI | GGYRCC | 1 cut(s) | 393 |
| BbsI | GAAGAC | 1 cut(s) | 438 |
| BbvCI | CCTCAGC | 1 cut(s) | 158 |
| BbvI | GCAGC | 7 cut(s) | 16, 52, 65, 68, 443, 496, 556 |
| BccI | CCATC | 3 cut(s) | 88, 94, 532 |
| BciVI | GTATCC | 1 cut(s) | 667 |
| BcnI | CCSGG | 1 cut(s) | 643 |
| BcoDI | GTCTC | 3 cut(s) | 195, 239, 385 |
| BfaI | CTAG | 2 cut(s) | 372, 534 |
| BfmI | CTRYAG | 2 cut(s) | 30, 822 |
| BfuI | GTATCC | 1 cut(s) | 667 |
| BisI | GCNGC | 7 cut(s) | 30, 54, 57, 66, 457, 485, 570 |
| BlsI | GCNGC | 7 cut(s) | 31, 55, 58, 67, 458, 486, 571 |
| BmcAI | AGTACT | 1 cut(s) | 436 |
| Bme1390I | CCNGG | 1 cut(s) | 643 |
| Bme18I | GGWCC | 1 cut(s) | 582 |
| BmgT120I | GGNCC | 1 cut(s) | 582 |
| BmiI | GGNNCC | 1 cut(s) | 395 |
| BmrFI | CCNGG | 1 cut(s) | 643 |
| BmrI | ACTGGG | 1 cut(s) | 420 |
| BmsI | GCATC | 2 cut(s) | 77, 182 |
| BmuI | ACTGGG | 1 cut(s) | 420 |
| BoxI | GACNNNNGTC | 1 cut(s) | 543 |
| BpiI | GAAGAC | 1 cut(s) | 438 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 192, 224 |
| BpmI | CTGGAG | 2 cut(s) | 45, 216 |
| Bpu10I | CCTNAGC | 1 cut(s) | 158 |
| BpuEI | CTTGAG | 1 cut(s) | 580 |
| BpuMI | CCSGG | 1 cut(s) | 643 |
| BsaBI | GATNNNNATC | 1 cut(s) | 523 |
| BsaI | GGTCTC | 3 cut(s) | 195, 239, 385 |
| BsaJI | CCNNGG | 1 cut(s) | 260 |
| BsaWI | WCCGGW | 1 cut(s) | 376 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 410 |
| Bse1I | ACTGG | 2 cut(s) | 177, 415 |
| Bse8I | GATNNNNATC | 1 cut(s) | 523 |
| BseDI | CCNNGG | 1 cut(s) | 260 |
| BseGI | GGATG | 5 cut(s) | 173, 271, 313, 795, 808 |
| BseJI | GATNNNNATC | 1 cut(s) | 523 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 410 |
| BseMII | CTCAG | 5 cut(s) | 33, 172, 204, 234, 768 |
| BseNI | ACTGG | 2 cut(s) | 177, 415 |
| BseRI | GAGGAG | 2 cut(s) | 337, 577 |
| BseXI | GCAGC | 7 cut(s) | 16, 52, 65, 68, 443, 496, 556 |
| BsgI | GTGCAG | 3 cut(s) | 442, 555, 608 |
| BshNI | GGYRCC | 1 cut(s) | 393 |
| BsiSI | CCGG | 2 cut(s) | 377, 642 |
| BslFI | GGGAC | 2 cut(s) | 350, 528 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 410 |
| BsmAI | GTCTC | 3 cut(s) | 195, 239, 385 |
| BsmFI | GGGAC | 2 cut(s) | 350, 528 |
| Bso31I | GGTCTC | 3 cut(s) | 195, 239, 385 |
| Bsp143I | GATC | 1 cut(s) | 106 |
| BspACI | CCGC | 4 cut(s) | 63, 97, 404, 679 |
| BspCNI | CTCAG | 5 cut(s) | 32, 171, 205, 235, 767 |
| BspLI | GGNNCC | 1 cut(s) | 395 |
| BspMAI | CTGCAG | 2 cut(s) | 34, 826 |
| BspPI | GGATC | 1 cut(s) | 101 |
| BspQI | GCTCTTC | 1 cut(s) | 669 |
| BspT107I | GGYRCC | 1 cut(s) | 393 |
| BspTNI | GGTCTC | 3 cut(s) | 195, 239, 385 |
| BsrBI | CCGCTC | 1 cut(s) | 679 |
| BsrI | ACTGG | 2 cut(s) | 177, 415 |
| BssECI | CCNNGG | 1 cut(s) | 260 |
| BssMI | GATC | 1 cut(s) | 106 |
| BssT1I | CCWWGG | 1 cut(s) | 260 |
| Bst4CI | ACNGT | 6 cut(s) | 196, 362, 444, 463, 582, 618 |
| Bst6I | CTCTTC | 1 cut(s) | 669 |
| BstC8I | GCNNGC | 1 cut(s) | 482 |
| BstDEI | CTNAG | 5 cut(s) | 19, 158, 213, 243, 754 |
| BstF5I | GGATG | 5 cut(s) | 173, 271, 313, 795, 808 |
| BstKTI | GATC | 1 cut(s) | 109 |
| BstMAI | GTCTC | 3 cut(s) | 195, 239, 385 |
| BstMBI | GATC | 1 cut(s) | 106 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 29, 62, 65 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 543 |
| BstSCI | CCNGG | 1 cut(s) | 641 |
| BstSFI | CTRYAG | 2 cut(s) | 30, 822 |
| BstV1I | GCAGC | 7 cut(s) | 16, 52, 65, 68, 443, 496, 556 |
| BstV2I | GAAGAC | 1 cut(s) | 438 |
| BstX2I | RGATCY | 1 cut(s) | 106 |
| BstYI | RGATCY | 1 cut(s) | 106 |
| BsuI | GTATCC | 1 cut(s) | 667 |
| BtsCI | GGATG | 5 cut(s) | 173, 271, 313, 795, 808 |
| BtsIMutI | CAGTG | 1 cut(s) | 367 |
| Cac8I | GCNNGC | 1 cut(s) | 482 |
| CaiI | CAGNNNCTG | 1 cut(s) | 761 |
| Cfr13I | GGNCC | 1 cut(s) | 582 |
| CpoI | CGGWCCG | 1 cut(s) | 582 |
| Csp6I | GTAC | 2 cut(s) | 394, 435 |
| CspI | CGGWCCG | 1 cut(s) | 582 |
| CviAII | CATG | 7 cut(s) | 223, 250, 292, 452, 628, 684, 783 |
| CviQI | GTAC | 2 cut(s) | 394, 435 |
| DdeI | CTNAG | 5 cut(s) | 19, 158, 213, 243, 754 |
| DpnI | GATC | 1 cut(s) | 108 |
| DpnII | GATC | 1 cut(s) | 106 |
| DraI | TTTAAA | 1 cut(s) | 769 |
| DraIII | CACNNNGTG | 1 cut(s) | 536 |
| Eam1104I | CTCTTC | 1 cut(s) | 669 |
| EarI | CTCTTC | 1 cut(s) | 669 |
| Eco130I | CCWWGG | 1 cut(s) | 260 |
| Eco31I | GGTCTC | 3 cut(s) | 195, 239, 385 |
| Eco47I | GGWCC | 1 cut(s) | 582 |
| Eco57I | CTGAAG | 2 cut(s) | 132, 693 |
| EcoT14I | CCWWGG | 1 cut(s) | 260 |
| ErhI | CCWWGG | 1 cut(s) | 260 |
| FaeI | CATG | 7 cut(s) | 226, 253, 295, 455, 631, 687, 786 |
| FaqI | GGGAC | 2 cut(s) | 350, 528 |
| FatI | CATG | 7 cut(s) | 222, 249, 291, 451, 627, 683, 782 |
| Fnu4HI | GCNGC | 7 cut(s) | 30, 54, 57, 66, 457, 485, 570 |
| FokI | GGATG | 5 cut(s) | 160, 278, 320, 802, 815 |
| Fsp4HI | GCNGC | 7 cut(s) | 30, 54, 57, 66, 457, 485, 570 |
| FspBI | CTAG | 2 cut(s) | 372, 534 |
| GluI | GCNGC | 7 cut(s) | 30, 54, 57, 66, 457, 485, 570 |
| GsuI | CTGGAG | 2 cut(s) | 45, 216 |
| HapII | CCGG | 2 cut(s) | 377, 642 |
| Hin1II | CATG | 7 cut(s) | 226, 253, 295, 455, 631, 687, 786 |
| HincII | GTYRAC | 1 cut(s) | 494 |
| HindII | GTYRAC | 1 cut(s) | 494 |
| HinfI | GANTC | 8 cut(s) | 11, 35, 217, 227, 302, 311, 506, 519 |
| HpaII | CCGG | 2 cut(s) | 377, 642 |
| HphI | GGTGA | 2 cut(s) | 279, 522 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 494 |
| Hpy188I | TCNGA | 7 cut(s) | 244, 298, 307, 505, 511, 622, 757 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 110, 315 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 494 |
| HpyAV | CCTTC | 1 cut(s) | 429 |
| HpyCH4III | ACNGT | 6 cut(s) | 196, 362, 444, 463, 582, 618 |
| HpyCH4V | TGCA | 8 cut(s) | 32, 68, 459, 572, 589, 731, 786, 824 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 29, 62, 65 |
| HpyF3I | CTNAG | 5 cut(s) | 19, 158, 213, 243, 754 |
| Hsp92II | CATG | 7 cut(s) | 226, 253, 295, 455, 631, 687, 786 |
| KpnI | GGTACC | 1 cut(s) | 397 |
| Kzo9I | GATC | 1 cut(s) | 106 |
| LguI | GCTCTTC | 1 cut(s) | 669 |
| LmnI | GCTCC | 4 cut(s) | 26, 99, 350, 644 |
| Lsp1109I | GCAGC | 7 cut(s) | 16, 52, 65, 68, 443, 496, 556 |
| LweI | GCATC | 2 cut(s) | 77, 182 |
| MaeI | CTAG | 2 cut(s) | 372, 534 |
| MaeIII | GTNAC | 5 cut(s) | 152, 276, 463, 536, 545 |
| MalI | GATC | 1 cut(s) | 108 |
| MbiI | CCGCTC | 1 cut(s) | 679 |
| MboI | GATC | 1 cut(s) | 106 |
| MboII | GAAGA | 5 cut(s) | 30, 125, 438, 686, 732 |
| MfeI | CAATTG | 1 cut(s) | 726 |
| MflI | RGATCY | 1 cut(s) | 106 |
| MluCI | AATT | 3 cut(s) | 133, 469, 726 |
| MlyI | GAGTC | 2 cut(s) | 296, 305 |
| MmeI | TCCRAC | 3 cut(s) | 178, 684, 774 |
| MroXI | GAANNNNTTC | 1 cut(s) | 817 |
| MseI | TTAA | 3 cut(s) | 474, 768, 829 |
| MspA1I | CMGCKG | 2 cut(s) | 23, 65 |
| MspI | CCGG | 2 cut(s) | 377, 642 |
| MspR9I | CCNGG | 1 cut(s) | 643 |
| MunI | CAATTG | 1 cut(s) | 726 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 29, 62, 65 |
| NciI | CCSGG | 1 cut(s) | 643 |
| NdeII | GATC | 1 cut(s) | 106 |
| NlaIII | CATG | 7 cut(s) | 226, 253, 295, 455, 631, 687, 786 |
| NlaIV | GGNNCC | 1 cut(s) | 395 |
| NmuCI | GTSAC | 3 cut(s) | 463, 536, 545 |
| PciSI | GCTCTTC | 1 cut(s) | 669 |
| PdmI | GAANNNNTTC | 1 cut(s) | 817 |
| PfeI | GAWTC | 6 cut(s) | 11, 35, 217, 227, 506, 519 |
| PflFI | GACNNNGTC | 1 cut(s) | 362 |
| PkrI | GCNGC | 7 cut(s) | 31, 55, 58, 67, 458, 486, 571 |
| PleI | GAGTC | 2 cut(s) | 296, 305 |
| PpsI | GAGTC | 2 cut(s) | 296, 305 |
| PshAI | GACNNNNGTC | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 1 cut(s) | 395 |
| PspPI | GGNCC | 1 cut(s) | 582 |
| PstI | CTGCAG | 2 cut(s) | 34, 826 |
| PstNI | CAGNNNCTG | 1 cut(s) | 761 |
| PsuI | RGATCY | 1 cut(s) | 106 |
| PsyI | GACNNNGTC | 1 cut(s) | 362 |
| PvuII | CAGCTG | 1 cut(s) | 23 |
| RsaI | GTAC | 2 cut(s) | 395, 436 |
| RsaNI | GTAC | 2 cut(s) | 394, 435 |
| Rsr2I | CGGWCCG | 1 cut(s) | 582 |
| RsrII | CGGWCCG | 1 cut(s) | 582 |
| SapI | GCTCTTC | 1 cut(s) | 669 |
| SaqAI | TTAA | 3 cut(s) | 474, 768, 829 |
| SatI | GCNGC | 7 cut(s) | 30, 54, 57, 66, 457, 485, 570 |
| Sau3AI | GATC | 1 cut(s) | 106 |
| Sau96I | GGNCC | 1 cut(s) | 582 |
| ScaI | AGTACT | 1 cut(s) | 436 |
| SchI | GAGTC | 2 cut(s) | 296, 305 |
| ScrFI | CCNGG | 1 cut(s) | 643 |
| SfaNI | GCATC | 2 cut(s) | 77, 182 |
| SfcI | CTRYAG | 2 cut(s) | 30, 822 |
| SinI | GGWCC | 1 cut(s) | 582 |
| SmlI | CTYRAG | 1 cut(s) | 559 |
| SmoI | CTYRAG | 1 cut(s) | 559 |
| Sse9I | AATT | 3 cut(s) | 133, 469, 726 |
| SsiI | CCGC | 4 cut(s) | 63, 97, 404, 679 |
| SspI | AATATT | 1 cut(s) | 284 |
| SspMI | CTAG | 2 cut(s) | 372, 534 |
| StyD4I | CCNGG | 1 cut(s) | 641 |
| StyI | CCWWGG | 1 cut(s) | 260 |
| TaaI | ACNGT | 6 cut(s) | 196, 362, 444, 463, 582, 618 |
| TaqI | TCGA | 3 cut(s) | 14, 129, 316 |
| TasI | AATT | 3 cut(s) | 133, 469, 726 |
| TatI | WGTACW | 1 cut(s) | 434 |
| TfiI | GAWTC | 6 cut(s) | 11, 35, 217, 227, 506, 519 |
| Tru1I | TTAA | 3 cut(s) | 474, 768, 829 |
| Tru9I | TTAA | 3 cut(s) | 474, 768, 829 |
| TscAI | CASTG | 1 cut(s) | 367 |
| TseFI | GTSAC | 3 cut(s) | 463, 536, 545 |
| TseI | GCWGC | 7 cut(s) | 29, 53, 56, 65, 456, 484, 569 |
| Tsp45I | GTSAC | 3 cut(s) | 463, 536, 545 |
| TspDTI | ATGAA | 2 cut(s) | 30, 710 |
| TspGWI | ACGGA | 1 cut(s) | 574 |
| TspRI | CASTG | 1 cut(s) | 367 |
| Tth111I | GACNNNGTC | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 1 cut(s) | 582 |
| XmnI | GAANNNNTTC | 1 cut(s) | 817 |
| XspI | CTAG | 2 cut(s) | 372, 534 |
| ZrmI | AGTACT | 1 cut(s) | 436 |