BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 547 |
| Acc36I | ACCTGC | 2 cut(s) | 547, 609 |
| AclWI | GGATC | 2 cut(s) | 12, 449 |
| AcsI | RAATTY | 2 cut(s) | 413, 499 |
| AcuI | CTGAAG | 2 cut(s) | 120, 347 |
| AdeI | CACNNNGTG | 1 cut(s) | 569 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 395 |
| AgsI | TTSAA | 4 cut(s) | 49, 382, 498, 583 |
| AjnI | CCWGG | 1 cut(s) | 298 |
| AluBI | AGCT | 4 cut(s) | 143, 331, 337, 349 |
| AluI | AGCT | 4 cut(s) | 143, 331, 337, 349 |
| Alw26I | GTCTC | 1 cut(s) | 27 |
| AlwI | GGATC | 2 cut(s) | 12, 449 |
| ApeKI | GCWGC | 4 cut(s) | 331, 334, 337, 346 |
| ApoI | RAATTY | 2 cut(s) | 413, 499 |
| AspS9I | GGNCC | 1 cut(s) | 505 |
| AsuC2I | CCSGG | 2 cut(s) | 567, 588 |
| AsuHPI | GGTGA | 3 cut(s) | 116, 528, 555 |
| AvaII | GGWCC | 1 cut(s) | 505 |
| BaeGI | GKGCMC | 1 cut(s) | 158 |
| BanII | GRGCYC | 1 cut(s) | 119 |
| BbvI | GCAGC | 4 cut(s) | 318, 324, 346, 358 |
| BccI | CCATC | 3 cut(s) | 144, 414, 419 |
| BciT130I | CCWGG | 1 cut(s) | 300 |
| BcnI | CCSGG | 2 cut(s) | 567, 588 |
| BcoDI | GTCTC | 1 cut(s) | 27 |
| BfaI | CTAG | 3 cut(s) | 95, 395, 649 |
| BfmI | CTRYAG | 1 cut(s) | 332 |
| BfuAI | ACCTGC | 2 cut(s) | 547, 609 |
| BisI | GCNGC | 4 cut(s) | 332, 335, 338, 347 |
| BlsI | GCNGC | 4 cut(s) | 333, 336, 339, 348 |
| Bme1390I | CCNGG | 3 cut(s) | 300, 567, 588 |
| Bme18I | GGWCC | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 1 cut(s) | 505 |
| BmrFI | CCNGG | 3 cut(s) | 300, 567, 588 |
| BmsI | GCATC | 2 cut(s) | 16, 172 |
| BpmI | CTGGAG | 1 cut(s) | 51 |
| BpuMI | CCSGG | 2 cut(s) | 567, 588 |
| BsaJI | CCNNGG | 2 cut(s) | 57, 356 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 24, 54 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 395 |
| Bse118I | RCCGGY | 1 cut(s) | 200 |
| Bse3DI | GCAATG | 1 cut(s) | 81 |
| BseBI | CCWGG | 1 cut(s) | 300 |
| BseDI | CCNNGG | 2 cut(s) | 57, 356 |
| BseGI | GGATG | 3 cut(s) | 272, 425, 430 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BseMI | GCAATG | 1 cut(s) | 81 |
| BseMII | CTCAG | 2 cut(s) | 132, 473 |
| BseRI | GAGGAG | 1 cut(s) | 255 |
| BseSI | GKGCMC | 1 cut(s) | 158 |
| BseXI | GCAGC | 4 cut(s) | 318, 324, 346, 358 |
| BseYI | CCCAGC | 1 cut(s) | 437 |
| BsiSI | CCGG | 3 cut(s) | 201, 567, 588 |
| BslFI | GGGAC | 1 cut(s) | 471 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 1 cut(s) | 27 |
| BsmFI | GGGAC | 1 cut(s) | 471 |
| BsmI | GAATGC | 1 cut(s) | 62 |
| Bsp1286I | GDGCHC | 2 cut(s) | 119, 158 |
| Bsp143I | GATC | 2 cut(s) | 4, 441 |
| Bsp19I | CCATGG | 2 cut(s) | 57, 356 |
| BspCNI | CTCAG | 2 cut(s) | 131, 472 |
| BspMAI | CTGCAG | 1 cut(s) | 336 |
| BspMI | ACCTGC | 2 cut(s) | 547, 609 |
| BspPI | GGATC | 2 cut(s) | 12, 449 |
| BsrDI | GCAATG | 1 cut(s) | 81 |
| BsrFI | RCCGGY | 1 cut(s) | 200 |
| BssAI | RCCGGY | 1 cut(s) | 200 |
| BssECI | CCNNGG | 2 cut(s) | 57, 356 |
| BssMI | GATC | 2 cut(s) | 4, 441 |
| BssT1I | CCWWGG | 2 cut(s) | 57, 356 |
| Bst2UI | CCWGG | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 1 cut(s) | 637 |
| BstC8I | GCNNGC | 2 cut(s) | 202, 435 |
| BstDEI | CTNAG | 2 cut(s) | 118, 459 |
| BstDSI | CCRYGG | 2 cut(s) | 57, 356 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 393 |
| BstF5I | GGATG | 3 cut(s) | 272, 425, 430 |
| BstKTI | GATC | 2 cut(s) | 7, 444 |
| BstMAI | GTCTC | 1 cut(s) | 27 |
| BstMBI | GATC | 2 cut(s) | 4, 441 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 140, 210, 331, 337, 343, 346 |
| BstNI | CCWGG | 1 cut(s) | 300 |
| BstNSI | RCATGY | 3 cut(s) | 388, 437, 611 |
| BstSCI | CCNGG | 3 cut(s) | 298, 565, 586 |
| BstSFI | CTRYAG | 1 cut(s) | 332 |
| BstSLI | GKGCMC | 1 cut(s) | 158 |
| BstV1I | GCAGC | 4 cut(s) | 318, 324, 346, 358 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BtgI | CCRYGG | 2 cut(s) | 57, 356 |
| BtsCI | GGATG | 3 cut(s) | 272, 425, 430 |
| BtsIMutI | CAGTG | 2 cut(s) | 156, 408 |
| BveI | ACCTGC | 2 cut(s) | 547, 609 |
| Cac8I | GCNNGC | 2 cut(s) | 202, 435 |
| Cfr10I | RCCGGY | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 1 cut(s) | 505 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 218, 253 |
| CviAII | CATG | 5 cut(s) | 58, 357, 385, 434, 608 |
| CviJI | RGCY | 8 cut(s) | 117, 143, 204, 298, 331, 337, 349, 574 |
| CviKI_1 | RGCY | 8 cut(s) | 117, 143, 204, 298, 331, 337, 349, 574 |
| DdeI | CTNAG | 2 cut(s) | 118, 459 |
| DpnI | GATC | 2 cut(s) | 6, 443 |
| DpnII | GATC | 2 cut(s) | 4, 441 |
| DraIII | CACNNNGTG | 1 cut(s) | 569 |
| Eco130I | CCWWGG | 2 cut(s) | 57, 356 |
| Eco24I | GRGCYC | 1 cut(s) | 119 |
| Eco47I | GGWCC | 1 cut(s) | 505 |
| Eco57I | CTGAAG | 2 cut(s) | 120, 347 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 393 |
| EcoRI | GAATTC | 1 cut(s) | 413 |
| EcoRII | CCWGG | 1 cut(s) | 298 |
| EcoT14I | CCWWGG | 2 cut(s) | 57, 356 |
| EcoT38I | GRGCYC | 1 cut(s) | 119 |
| ErhI | CCWWGG | 2 cut(s) | 57, 356 |
| FaeI | CATG | 5 cut(s) | 61, 360, 388, 437, 611 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 35, 67 |
| FaqI | GGGAC | 1 cut(s) | 471 |
| FatI | CATG | 5 cut(s) | 57, 356, 384, 433, 607 |
| FauNDI | CATATG | 1 cut(s) | 130 |
| Fnu4HI | GCNGC | 4 cut(s) | 332, 335, 338, 347 |
| FokI | GGATG | 3 cut(s) | 259, 432, 437 |
| FriOI | GRGCYC | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 4 cut(s) | 332, 335, 338, 347 |
| FspBI | CTAG | 3 cut(s) | 95, 395, 649 |
| GluI | GCNGC | 4 cut(s) | 332, 335, 338, 347 |
| GsaI | CCCAGC | 1 cut(s) | 441 |
| GsuI | CTGGAG | 1 cut(s) | 51 |
| HapII | CCGG | 3 cut(s) | 201, 567, 588 |
| Hin1II | CATG | 5 cut(s) | 61, 360, 388, 437, 611 |
| HinfI | GANTC | 3 cut(s) | 107, 523, 533 |
| HpaII | CCGG | 3 cut(s) | 201, 567, 588 |
| HphI | GGTGA | 3 cut(s) | 116, 528, 555 |
| Hpy188I | TCNGA | 6 cut(s) | 121, 139, 374, 419, 505, 546 |
| Hpy188III | TCNNGA | 1 cut(s) | 95 |
| HpyCH4III | ACNGT | 1 cut(s) | 637 |
| HpyCH4IV | ACGT | 1 cut(s) | 39 |
| HpyCH4V | TGCA | 4 cut(s) | 334, 346, 604, 611 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 140, 210, 331, 337, 343, 346 |
| HpyF3I | CTNAG | 2 cut(s) | 118, 459 |
| HpySE526I | ACGT | 1 cut(s) | 39 |
| Hsp92II | CATG | 5 cut(s) | 61, 360, 388, 437, 611 |
| KroI | GCCGGC | 1 cut(s) | 200 |
| KroNI | GCCGGC | 1 cut(s) | 202 |
| Kzo9I | GATC | 2 cut(s) | 4, 441 |
| LmnI | GCTCC | 1 cut(s) | 547 |
| Lsp1109I | GCAGC | 4 cut(s) | 318, 324, 346, 358 |
| LweI | GCATC | 2 cut(s) | 16, 172 |
| MaeI | CTAG | 3 cut(s) | 95, 395, 649 |
| MaeII | ACGT | 1 cut(s) | 39 |
| MaeIII | GTNAC | 6 cut(s) | 17, 283, 406, 466, 553, 596 |
| MalI | GATC | 2 cut(s) | 6, 443 |
| MboI | GATC | 2 cut(s) | 4, 441 |
| MboII | GAAGA | 3 cut(s) | 263, 344, 620 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MhlI | GDGCHC | 2 cut(s) | 119, 158 |
| MluCI | AATT | 2 cut(s) | 413, 499 |
| MnlI | CCTC | 2 cut(s) | 276, 584 |
| MroNI | GCCGGC | 1 cut(s) | 200 |
| MseI | TTAA | 1 cut(s) | 171 |
| MspA1I | CMGCKG | 1 cut(s) | 337 |
| MspI | CCGG | 3 cut(s) | 201, 567, 588 |
| MspR9I | CCNGG | 3 cut(s) | 300, 567, 588 |
| Mva1269I | GAATGC | 1 cut(s) | 62 |
| MvaI | CCWGG | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 140, 210, 331, 337, 343, 346 |
| NaeI | GCCGGC | 1 cut(s) | 202 |
| NciI | CCSGG | 2 cut(s) | 567, 588 |
| NcoI | CCATGG | 2 cut(s) | 57, 356 |
| NdeI | CATATG | 1 cut(s) | 130 |
| NdeII | GATC | 2 cut(s) | 4, 441 |
| NgoMIV | GCCGGC | 1 cut(s) | 200 |
| NlaIII | CATG | 5 cut(s) | 61, 360, 388, 437, 611 |
| NmuCI | GTSAC | 2 cut(s) | 406, 553 |
| NspI | RCATGY | 3 cut(s) | 388, 437, 611 |
| PaeI | GCATGC | 1 cut(s) | 437 |
| PaqCI | CACCTGC | 1 cut(s) | 547 |
| PctI | GAATGC | 1 cut(s) | 62 |
| PdiI | GCCGGC | 1 cut(s) | 202 |
| PfeI | GAWTC | 3 cut(s) | 107, 523, 533 |
| PkrI | GCNGC | 4 cut(s) | 333, 336, 339, 348 |
| Psp6I | CCWGG | 1 cut(s) | 298 |
| PspFI | CCCAGC | 1 cut(s) | 437 |
| PspGI | CCWGG | 1 cut(s) | 298 |
| PspPI | GGNCC | 1 cut(s) | 505 |
| PstI | CTGCAG | 1 cut(s) | 336 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| PvuII | CAGCTG | 1 cut(s) | 337 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 4 cut(s) | 332, 335, 338, 347 |
| Sau3AI | GATC | 2 cut(s) | 4, 441 |
| Sau96I | GGNCC | 1 cut(s) | 505 |
| ScrFI | CCNGG | 3 cut(s) | 300, 567, 588 |
| SduI | GDGCHC | 2 cut(s) | 119, 158 |
| SfaNI | GCATC | 2 cut(s) | 16, 172 |
| SfcI | CTRYAG | 1 cut(s) | 332 |
| SinI | GGWCC | 1 cut(s) | 505 |
| SphI | GCATGC | 1 cut(s) | 437 |
| Sse9I | AATT | 2 cut(s) | 413, 499 |
| SspMI | CTAG | 3 cut(s) | 95, 395, 649 |
| StyD4I | CCNGG | 3 cut(s) | 298, 565, 586 |
| StyI | CCWWGG | 2 cut(s) | 57, 356 |
| TaaI | ACNGT | 1 cut(s) | 637 |
| TaiI | ACGT | 1 cut(s) | 42 |
| TaqI | TCGA | 2 cut(s) | 268, 521 |
| TasI | AATT | 2 cut(s) | 413, 499 |
| TfiI | GAWTC | 3 cut(s) | 107, 523, 533 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TscAI | CASTG | 2 cut(s) | 163, 415 |
| TseFI | GTSAC | 2 cut(s) | 406, 553 |
| TseI | GCWGC | 4 cut(s) | 331, 334, 337, 346 |
| Tsp45I | GTSAC | 2 cut(s) | 406, 553 |
| TspGWI | ACGGA | 1 cut(s) | 541 |
| TspRI | CASTG | 2 cut(s) | 163, 415 |
| VpaK11BI | GGWCC | 1 cut(s) | 505 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 393 |
| XapI | RAATTY | 2 cut(s) | 413, 499 |
| XbaI | TCTAGA | 1 cut(s) | 94 |
| XceI | RCATGY | 3 cut(s) | 388, 437, 611 |
| XspI | CTAG | 3 cut(s) | 95, 395, 649 |