BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 390 |
| AccB1I | GGYRCC | 1 cut(s) | 390 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 407 |
| AccI | GTMKAC | 1 cut(s) | 62 |
| AciI | CCGC | 1 cut(s) | 69 |
| AclWI | GGATC | 2 cut(s) | 98, 194 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfaI | GTAC | 1 cut(s) | 392 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 407 |
| AflII | CTTAAG | 1 cut(s) | 556 |
| AflIII | ACRYGT | 1 cut(s) | 336 |
| AgsI | TTSAA | 5 cut(s) | 181, 420, 472, 653, 754 |
| AhlI | ACTAGT | 1 cut(s) | 431 |
| AluBI | AGCT | 3 cut(s) | 18, 453, 551 |
| AluI | AGCT | 3 cut(s) | 18, 453, 551 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 362 |
| Alw26I | GTCTC | 1 cut(s) | 382 |
| AlwI | GGATC | 2 cut(s) | 98, 194 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 746 |
| AoxI | GGCC | 1 cut(s) | 665 |
| ApeKI | GCWGC | 3 cut(s) | 453, 566, 809 |
| Asp718I | GGTACC | 1 cut(s) | 390 |
| AspLEI | GCGC | 1 cut(s) | 458 |
| AspS9I | GGNCC | 1 cut(s) | 608 |
| AsuHPI | GGTGA | 4 cut(s) | 48, 276, 519, 728 |
| AvaII | GGWCC | 1 cut(s) | 608 |
| BanI | GGYRCC | 1 cut(s) | 390 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 362 |
| BbvI | GCAGC | 3 cut(s) | 440, 553, 796 |
| BccI | CCATC | 2 cut(s) | 529, 622 |
| BcoDI | GTCTC | 1 cut(s) | 382 |
| BcuI | ACTAGT | 1 cut(s) | 431 |
| BfaI | CTAG | 4 cut(s) | 174, 369, 432, 531 |
| BfmI | CTRYAG | 1 cut(s) | 810 |
| BfrI | CTTAAG | 1 cut(s) | 556 |
| BisI | GCNGC | 3 cut(s) | 454, 567, 810 |
| BlsI | GCNGC | 3 cut(s) | 455, 568, 811 |
| Bme18I | GGWCC | 1 cut(s) | 608 |
| BmgT120I | GGNCC | 1 cut(s) | 608 |
| BmiI | GGNNCC | 2 cut(s) | 392, 610 |
| BmrI | ACTGGG | 1 cut(s) | 417 |
| BmsI | GCATC | 4 cut(s) | 80, 86, 92, 179 |
| BmuI | ACTGGG | 1 cut(s) | 417 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 189, 221 |
| BsaBI | GATNNNNATC | 1 cut(s) | 520 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 326, 356 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 407 |
| Bse1I | ACTGG | 2 cut(s) | 374, 412 |
| Bse8I | GATNNNNATC | 1 cut(s) | 520 |
| BseGI | GGATG | 4 cut(s) | 268, 439, 780, 793 |
| BseJI | GATNNNNATC | 1 cut(s) | 520 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BseMII | CTCAG | 4 cut(s) | 169, 315, 561, 753 |
| BseNI | ACTGG | 2 cut(s) | 374, 412 |
| BseRI | GAGGAG | 2 cut(s) | 334, 674 |
| BseXI | GCAGC | 3 cut(s) | 440, 553, 796 |
| BsgI | GTGCAG | 2 cut(s) | 552, 605 |
| BshFI | GGCC | 1 cut(s) | 667 |
| BshNI | GGYRCC | 1 cut(s) | 390 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 362 |
| BslFI | GGGAC | 3 cut(s) | 469, 594, 811 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BsmAI | GTCTC | 1 cut(s) | 382 |
| BsmFI | GGGAC | 3 cut(s) | 469, 594, 811 |
| BsnI | GGCC | 1 cut(s) | 667 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 362 |
| Bsp143I | GATC | 3 cut(s) | 103, 162, 199 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspANI | GGCC | 1 cut(s) | 667 |
| BspCNI | CTCAG | 4 cut(s) | 168, 314, 560, 752 |
| BspLI | GGNNCC | 2 cut(s) | 392, 610 |
| BspMAI | CTGCAG | 1 cut(s) | 814 |
| BspPI | GGATC | 2 cut(s) | 98, 194 |
| BspT107I | GGYRCC | 1 cut(s) | 390 |
| BspTI | CTTAAG | 1 cut(s) | 556 |
| BsrI | ACTGG | 2 cut(s) | 374, 412 |
| BssMI | GATC | 3 cut(s) | 103, 162, 199 |
| Bst4CI | ACNGT | 4 cut(s) | 60, 193, 483, 579 |
| BstAFI | CTTAAG | 1 cut(s) | 556 |
| BstDEI | CTNAG | 5 cut(s) | 155, 274, 301, 547, 739 |
| BstF5I | GGATG | 4 cut(s) | 268, 439, 780, 793 |
| BstHHI | GCGC | 1 cut(s) | 458 |
| BstKTI | GATC | 3 cut(s) | 106, 165, 202 |
| BstMAI | GTCTC | 1 cut(s) | 382 |
| BstMBI | GATC | 3 cut(s) | 103, 162, 199 |
| BstSFI | CTRYAG | 1 cut(s) | 810 |
| BstV1I | GCAGC | 3 cut(s) | 440, 553, 796 |
| BstX2I | RGATCY | 2 cut(s) | 103, 199 |
| BstYI | RGATCY | 2 cut(s) | 103, 199 |
| BsuRI | GGCC | 1 cut(s) | 667 |
| BtsCI | GGATG | 4 cut(s) | 268, 439, 780, 793 |
| BtsIMutI | CAGTG | 1 cut(s) | 588 |
| CaiI | CAGNNNCTG | 1 cut(s) | 746 |
| CfoI | GCGC | 1 cut(s) | 458 |
| Cfr13I | GGNCC | 1 cut(s) | 608 |
| Csp6I | GTAC | 1 cut(s) | 391 |
| CviAII | CATG | 6 cut(s) | 166, 220, 247, 353, 669, 768 |
| CviJI | RGCY | 7 cut(s) | 18, 453, 498, 551, 566, 667, 745 |
| CviKI_1 | RGCY | 7 cut(s) | 18, 453, 498, 551, 566, 667, 745 |
| CviQI | GTAC | 1 cut(s) | 391 |
| DdeI | CTNAG | 5 cut(s) | 155, 274, 301, 547, 739 |
| DpnI | GATC | 3 cut(s) | 105, 164, 201 |
| DpnII | GATC | 3 cut(s) | 103, 162, 199 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco47I | GGWCC | 1 cut(s) | 608 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| FaeI | CATG | 6 cut(s) | 169, 223, 250, 356, 672, 771 |
| FaqI | GGGAC | 3 cut(s) | 469, 594, 811 |
| FatI | CATG | 6 cut(s) | 165, 219, 246, 352, 668, 767 |
| FauI | CCCGC | 1 cut(s) | 76 |
| FblI | GTMKAC | 1 cut(s) | 62 |
| Fnu4HI | GCNGC | 3 cut(s) | 454, 567, 810 |
| FokI | GGATG | 4 cut(s) | 275, 426, 787, 800 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 3 cut(s) | 454, 567, 810 |
| FspBI | CTAG | 4 cut(s) | 174, 369, 432, 531 |
| GlaI | GCGC | 1 cut(s) | 457 |
| GluI | GCNGC | 3 cut(s) | 454, 567, 810 |
| HaeIII | GGCC | 1 cut(s) | 667 |
| HhaI | GCGC | 1 cut(s) | 458 |
| Hin1II | CATG | 6 cut(s) | 169, 223, 250, 356, 672, 771 |
| Hin6I | GCGC | 1 cut(s) | 456 |
| HinP1I | GCGC | 1 cut(s) | 456 |
| HincII | GTYRAC | 3 cut(s) | 63, 491, 627 |
| HindII | GTYRAC | 3 cut(s) | 63, 491, 627 |
| HinfI | GANTC | 6 cut(s) | 224, 299, 308, 503, 516, 799 |
| HphI | GGTGA | 4 cut(s) | 48, 276, 519, 728 |
| Hpy166II | GTNNAC | 5 cut(s) | 63, 121, 437, 491, 627 |
| Hpy188I | TCNGA | 7 cut(s) | 31, 241, 295, 304, 502, 508, 742 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 87, 107 |
| Hpy8I | GTNNAC | 5 cut(s) | 63, 121, 437, 491, 627 |
| Hpy99I | CGWCG | 1 cut(s) | 64 |
| HpyAV | CCTTC | 4 cut(s) | 375, 426, 453, 647 |
| HpyCH4III | ACNGT | 4 cut(s) | 60, 193, 483, 579 |
| HpyCH4IV | ACGT | 1 cut(s) | 338 |
| HpyCH4V | TGCA | 8 cut(s) | 77, 83, 233, 257, 569, 586, 771, 812 |
| HpyF3I | CTNAG | 5 cut(s) | 155, 274, 301, 547, 739 |
| HpySE526I | ACGT | 1 cut(s) | 338 |
| Hsp92II | CATG | 6 cut(s) | 169, 223, 250, 356, 672, 771 |
| HspAI | GCGC | 1 cut(s) | 456 |
| KpnI | GGTACC | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 103, 162, 199 |
| LmnI | GCTCC | 1 cut(s) | 677 |
| Lsp1109I | GCAGC | 3 cut(s) | 440, 553, 796 |
| LweI | GCATC | 4 cut(s) | 80, 86, 92, 179 |
| MaeI | CTAG | 4 cut(s) | 174, 369, 432, 531 |
| MaeII | ACGT | 1 cut(s) | 338 |
| MaeIII | GTNAC | 1 cut(s) | 533 |
| MalI | GATC | 3 cut(s) | 105, 164, 201 |
| MboI | GATC | 3 cut(s) | 103, 162, 199 |
| MboII | GAAGA | 4 cut(s) | 33, 39, 122, 717 |
| MflI | RGATCY | 2 cut(s) | 103, 199 |
| MhlI | GDGCHC | 2 cut(s) | 20, 362 |
| MluCI | AATT | 2 cut(s) | 130, 466 |
| MlyI | GAGTC | 3 cut(s) | 293, 302, 793 |
| MmeI | TCCRAC | 1 cut(s) | 175 |
| MnlI | CCTC | 9 cut(s) | 109, 134, 289, 355, 488, 502, 555, 652, 657 |
| MseI | TTAA | 1 cut(s) | 557 |
| MspA1I | CMGCKG | 1 cut(s) | 551 |
| MspCI | CTTAAG | 1 cut(s) | 556 |
| NdeII | GATC | 3 cut(s) | 103, 162, 199 |
| NlaIII | CATG | 6 cut(s) | 169, 223, 250, 356, 672, 771 |
| NlaIV | GGNNCC | 2 cut(s) | 392, 610 |
| NmuCI | GTSAC | 1 cut(s) | 533 |
| PfeI | GAWTC | 3 cut(s) | 224, 503, 516 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 407 |
| PkrI | GCNGC | 3 cut(s) | 455, 568, 811 |
| PleI | GAGTC | 3 cut(s) | 293, 302, 793 |
| PpsI | GAGTC | 3 cut(s) | 293, 302, 793 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PspN4I | GGNNCC | 2 cut(s) | 392, 610 |
| PspPI | GGNCC | 1 cut(s) | 608 |
| PstI | CTGCAG | 1 cut(s) | 814 |
| PstNI | CAGNNNCTG | 1 cut(s) | 746 |
| PsuI | RGATCY | 2 cut(s) | 103, 199 |
| PvuII | CAGCTG | 1 cut(s) | 551 |
| RsaI | GTAC | 1 cut(s) | 392 |
| RsaNI | GTAC | 1 cut(s) | 391 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SalI | GTCGAC | 1 cut(s) | 61 |
| SaqAI | TTAA | 1 cut(s) | 557 |
| SatI | GCNGC | 3 cut(s) | 454, 567, 810 |
| Sau3AI | GATC | 3 cut(s) | 103, 162, 199 |
| Sau96I | GGNCC | 1 cut(s) | 608 |
| SchI | GAGTC | 3 cut(s) | 293, 302, 793 |
| SduI | GDGCHC | 2 cut(s) | 20, 362 |
| SfaNI | GCATC | 4 cut(s) | 80, 86, 92, 179 |
| SfcI | CTRYAG | 1 cut(s) | 810 |
| SinI | GGWCC | 1 cut(s) | 608 |
| SmlI | CTYRAG | 1 cut(s) | 556 |
| SmoI | CTYRAG | 1 cut(s) | 556 |
| SpeI | ACTAGT | 1 cut(s) | 431 |
| Sse9I | AATT | 2 cut(s) | 130, 466 |
| SsiI | CCGC | 1 cut(s) | 69 |
| SspMI | CTAG | 4 cut(s) | 174, 369, 432, 531 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| TaaI | ACNGT | 4 cut(s) | 60, 193, 483, 579 |
| TaiI | ACGT | 1 cut(s) | 341 |
| TaqI | TCGA | 4 cut(s) | 20, 62, 126, 428 |
| TasI | AATT | 2 cut(s) | 130, 466 |
| TfiI | GAWTC | 3 cut(s) | 224, 503, 516 |
| Tru1I | TTAA | 1 cut(s) | 557 |
| Tru9I | TTAA | 1 cut(s) | 557 |
| TscAI | CASTG | 1 cut(s) | 588 |
| TseFI | GTSAC | 1 cut(s) | 533 |
| TseI | GCWGC | 3 cut(s) | 453, 566, 809 |
| Tsp45I | GTSAC | 1 cut(s) | 533 |
| TspDTI | ATGAA | 6 cut(s) | 27, 33, 39, 695, 711, 794 |
| TspGWI | ACGGA | 1 cut(s) | 372 |
| TspRI | CASTG | 1 cut(s) | 588 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 407 |
| Vha464I | CTTAAG | 1 cut(s) | 556 |
| VpaK11BI | GGWCC | 1 cut(s) | 608 |
| XmiI | GTMKAC | 1 cut(s) | 62 |
| XspI | CTAG | 4 cut(s) | 174, 369, 432, 531 |