MD11G1317000.v1.1

BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013429
Physical Location & Seq
Reverse (-)
42869141 .. 42871663
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1317000.v1.1.491

Sequence Viewer

Length: 867 bp
ATGCGTCCGGAGTCGAGCTCATCGGGCGGGGGTGGAGGCGGAGGAGCAGGAGGTGGTGGTGGTGGCCAAGAGATAGAATCTTCGTCATCTGCAAATGCATCGGCTGCATCAATTTCATCGTCTTCTTCACCATCTCCATCTGGGAAGCGGAGCAGAGATCCTGGAGATGAGGTTTACCTCGACAATTTCCACTCTCACAAGCGTTATCTCAGCGAGATTATGGCATCTAGTTTGAATGGACTCACTGTTGGAGACCCACTCCCTCTCCCTGACAATCTCATGGAATCTCCAGCACAGTCTGATACCATGTTTTATCCAAGGGATGAGATGTCCTTACAATATTCACCAATGTCAGAGGACTCAGATGACTCTCGATTTTGTGAGAACCCGATAAATACTTGCTCCTCCCAACCTGATAGTGTTCCCTCTAGTCCCGTCTCTCCTTATAGGTACCAAAAATTTCCTCCCACCTGTCCGAGCACTTCACATGGCTGCACTGTCACTAATTTCAACAGCTCCCAGCCTCGTCAGCGAGGCTCTGATTCAGAGGGGCGATTCCCGTCATCACCTAGTGATATTTGTCACTCAGCTGACTTAAGGAGGGCTGCACTCTTGCGGTCTGTGCAAATGAGAACACAACCTGCTGGCCCTCCGTCTTACGAGTTGGAGTTTGGTTCAGGGCAAGAGCCTGTATCCAATATTGAAGCTGAAGAGCAGCCATGTTCCTACATGAAGTCTTTAGTTGATGAGAGGGAATATCCGATTGCAGGGTGTTCTTCTATGGGTATCACAGAGCCTGATTTTAAACAAGAGAAATCATGCAGGATGTTGGATATGGATGTGAAAGGGATTGATTCTGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

30.72

Weight (kDa)

4.6

Isoelectric Point (pI)

86.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25920
fragaria_vesca FvH4_5g39570 FvH4_5g39570
malus_domestica MD03G1297200.v1.1 MD11G1317000.v1.1
prunus_persica Prupe.8G269800_v2.0.a1
pyrus_communis pycom03g23570
rosa_chinensis RchiOBHm_Chr7g0241881
rosa_laevigata RLG00000000532
rosa_multiflora Rmu_sc0001865.1_g000002
rosa_roxburghii Rroxscaffold_3G00218510
rosa_rugosa Rorug07G0348300 Rorug07G0348400
rosa_samantha Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000
rosa_wichuraiana Rw7G042490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
Acc65I GGTACC 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 4 cut(s) 27, 39, 148, 616
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 729
AdeI CACNNNGTG 1 cut(s) 572
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 767
AflII CTTAAG 1 cut(s) 595
AgsI TTSAA 3 cut(s) 235, 511, 704
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 18, 516, 590, 707
AluI AGCT 4 cut(s) 18, 516, 590, 707
Alw21I GWGCWC 2 cut(s) 20, 482
Alw26I GTCTC 2 cut(s) 246, 442
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 797
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 2 cut(s) 64, 646
ApeKI GCWGC 4 cut(s) 104, 492, 605, 715
ApoI RAATTY 1 cut(s) 458
Asp718I GGTACC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 647
AsuHPI GGTGA 3 cut(s) 120, 336, 558
BalI TGGCCA 1 cut(s) 66
BanI GGYRCC 1 cut(s) 450
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 20, 482
BbvI GCAGC 4 cut(s) 91, 479, 592, 727
BccI CCATC 2 cut(s) 139, 145
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 246, 442
BfaI CTAG 3 cut(s) 228, 429, 570
BfmI CTRYAG 1 cut(s) 858
BfrI CTTAAG 1 cut(s) 595
BfuAI ACCTGC 1 cut(s) 649
BfuI GTATCC 1 cut(s) 703
BisI GCNGC 4 cut(s) 105, 493, 606, 716
BlsI GCNGC 4 cut(s) 106, 494, 607, 717
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 647
BmiI GGNNCC 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 107, 116, 233
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 3 cut(s) 34, 243, 275
BpmI CTGGAG 2 cut(s) 183, 273
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 767
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 3 cut(s) 328, 831, 844
BseLI CCNNNNNNNGG 1 cut(s) 767
BseMII CTCAG 3 cut(s) 223, 375, 600
BseRI GAGGAG 2 cut(s) 57, 394
BseXI GCAGC 4 cut(s) 91, 479, 592, 727
BseYI CCCAGC 1 cut(s) 519
BsgI GTGCAG 2 cut(s) 478, 591
BshFI GGCC 2 cut(s) 66, 648
BshNI GGYRCC 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 20, 482
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 767
BsmAI GTCTC 2 cut(s) 246, 442
BsmBI CGTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 2 cut(s) 66, 648
Bso31I GGTCTC 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 20, 482
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 4 cut(s) 27, 39, 148, 616
BspANI GGCC 2 cut(s) 66, 648
BspCNI CTCAG 3 cut(s) 222, 374, 599
BspEI TCCGGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 452
BspMAI CTGCAG 1 cut(s) 862
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 247, 297, 499
Bst6I CTCTTC 1 cut(s) 705
BstAFI CTTAAG 1 cut(s) 595
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 3 cut(s) 209, 361, 586
BstF5I GGATG 3 cut(s) 328, 831, 844
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 246, 442
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 4 cut(s) 24, 104, 529, 622
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 858
BstV1I GCAGC 4 cut(s) 91, 479, 592, 727
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 2 cut(s) 66, 648
BtsCI GGATG 3 cut(s) 328, 831, 844
BtsIMutI CAGTG 2 cut(s) 243, 495
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 1 cut(s) 646
CaiI CAGNNNCTG 1 cut(s) 797
Cfr13I GGNCC 1 cut(s) 647
Csp6I GTAC 1 cut(s) 451
CviAII CATG 6 cut(s) 280, 307, 488, 720, 730, 819
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 209, 361, 586
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraI TTTAAA 1 cut(s) 805
DraIII CACNNNGTG 1 cut(s) 572
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
EciI GGCGGA 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 729
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 317
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 317
Esp3I CGTCTC 1 cut(s) 442
FaeI CATG 6 cut(s) 283, 310, 491, 723, 733, 822
FaqI GGGAC 1 cut(s) 417
FatI CATG 6 cut(s) 279, 306, 487, 719, 729, 818
FauI CCCGC 1 cut(s) 20
Fnu4HI GCNGC 4 cut(s) 105, 493, 606, 716
FokI GGATG 3 cut(s) 335, 838, 851
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 105, 493, 606, 716
FspBI CTAG 3 cut(s) 228, 429, 570
GluI GCNGC 4 cut(s) 105, 493, 606, 716
GsaI CCCAGC 1 cut(s) 523
GsuI CTGGAG 2 cut(s) 183, 273
HaeIII GGCC 2 cut(s) 66, 648
HapII CCGG 1 cut(s) 8
Hin1II CATG 6 cut(s) 283, 310, 491, 723, 733, 822
HinfI GANTC 9 cut(s) 11, 77, 240, 284, 359, 368, 542, 555, 854
HpaII CCGG 1 cut(s) 8
HphI GGTGA 3 cut(s) 120, 336, 558
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 7 cut(s) 301, 355, 364, 477, 541, 547, 762
Hpy188III TCNNGA 2 cut(s) 8, 372
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4III ACNGT 3 cut(s) 247, 297, 499
HpyCH4V TGCA 9 cut(s) 92, 98, 107, 495, 608, 625, 767, 822, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 104, 529, 622
HpyF3I CTNAG 3 cut(s) 209, 361, 586
Hsp92II CATG 6 cut(s) 283, 310, 491, 723, 733, 822
Kpn2I TCCGGA 1 cut(s) 7
KpnI GGTACC 1 cut(s) 454
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 4 cut(s) 44, 150, 407, 521
Lsp1109I GCAGC 4 cut(s) 91, 479, 592, 727
LweI GCATC 3 cut(s) 107, 116, 233
MaeI CTAG 3 cut(s) 228, 429, 570
MaeIII GTNAC 2 cut(s) 499, 581
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 5 cut(s) 72, 114, 117, 722, 768
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 20, 482
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 4 cut(s) 111, 184, 458, 505
MluNI TGGCCA 1 cut(s) 66
MlyI GAGTC 4 cut(s) 20, 234, 353, 362
MmeI TCCRAC 3 cut(s) 229, 645, 810
Mox20I TGGCCA 1 cut(s) 66
Mph1103I ATGCAT 1 cut(s) 100
MroI TCCGGA 1 cut(s) 7
MscI TGGCCA 1 cut(s) 66
MseI TTAA 3 cut(s) 596, 804, 865
Msp20I TGGCCA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 590
MspCI CTTAAG 1 cut(s) 595
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 4 cut(s) 24, 104, 529, 622
NdeII GATC 1 cut(s) 157
NlaIII CATG 6 cut(s) 283, 310, 491, 723, 733, 822
NlaIV GGNNCC 1 cut(s) 452
NmuCI GTSAC 2 cut(s) 499, 581
NsiI ATGCAT 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 705
PfeI GAWTC 5 cut(s) 77, 284, 542, 555, 854
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 4 cut(s) 106, 494, 607, 717
PleI GAGTC 4 cut(s) 19, 234, 353, 362
PpsI GAGTC 4 cut(s) 19, 234, 353, 362
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 519
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 452
PspPI GGNCC 1 cut(s) 647
PstI CTGCAG 1 cut(s) 862
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
SacI GAGCTC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 3 cut(s) 596, 804, 865
SatI GCNGC 4 cut(s) 105, 493, 606, 716
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 647
SchI GAGTC 4 cut(s) 20, 234, 353, 362
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 2 cut(s) 20, 482
SfaNI GCATC 3 cut(s) 107, 116, 233
SfcI CTRYAG 1 cut(s) 858
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 4 cut(s) 111, 184, 458, 505
SsiI CCGC 4 cut(s) 27, 39, 148, 616
SspI AATATT 2 cut(s) 341, 700
SspMI CTAG 3 cut(s) 228, 429, 570
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 3 cut(s) 247, 297, 499
TaqI TCGA 3 cut(s) 14, 180, 373
TasI AATT 4 cut(s) 111, 184, 458, 505
TfiI GAWTC 5 cut(s) 77, 284, 542, 555, 854
Tru1I TTAA 3 cut(s) 596, 804, 865
Tru9I TTAA 3 cut(s) 596, 804, 865
TscAI CASTG 2 cut(s) 250, 502
TseFI GTSAC 2 cut(s) 499, 581
TseI GCWGC 4 cut(s) 104, 492, 605, 715
Tsp45I GTSAC 2 cut(s) 499, 581
TspDTI ATGAA 2 cut(s) 105, 746
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 2 cut(s) 250, 502
Vha464I CTTAAG 1 cut(s) 595
XapI RAATTY 1 cut(s) 458
XspI CTAG 3 cut(s) 228, 429, 570
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.