BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 102 |
| AccB1I | GGYRCC | 1 cut(s) | 102 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 119 |
| AdeI | CACNNNGTG | 1 cut(s) | 245 |
| AfaI | GTAC | 1 cut(s) | 104 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AflII | CTTAAG | 1 cut(s) | 268 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AgsI | TTSAA | 4 cut(s) | 132, 184, 365, 466 |
| AhlI | ACTAGT | 1 cut(s) | 143 |
| AluBI | AGCT | 2 cut(s) | 165, 263 |
| AluI | AGCT | 2 cut(s) | 165, 263 |
| Alw21I | GWGCWC | 1 cut(s) | 74 |
| Alw26I | GTCTC | 1 cut(s) | 94 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 458 |
| AoxI | GGCC | 1 cut(s) | 377 |
| ApeKI | GCWGC | 3 cut(s) | 165, 278, 521 |
| Asp718I | GGTACC | 1 cut(s) | 102 |
| AspLEI | GCGC | 1 cut(s) | 170 |
| AspS9I | GGNCC | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 2 cut(s) | 231, 440 |
| AvaII | GGWCC | 1 cut(s) | 320 |
| BanI | GGYRCC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 1 cut(s) | 74 |
| BbvI | GCAGC | 3 cut(s) | 152, 265, 508 |
| BccI | CCATC | 2 cut(s) | 241, 334 |
| BcoDI | GTCTC | 1 cut(s) | 94 |
| BcuI | ACTAGT | 1 cut(s) | 143 |
| BfaI | CTAG | 3 cut(s) | 81, 144, 243 |
| BfmI | CTRYAG | 1 cut(s) | 522 |
| BfrI | CTTAAG | 1 cut(s) | 268 |
| BisI | GCNGC | 3 cut(s) | 166, 279, 522 |
| BlsI | GCNGC | 3 cut(s) | 167, 280, 523 |
| Bme18I | GGWCC | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 1 cut(s) | 320 |
| BmiI | GGNNCC | 2 cut(s) | 104, 322 |
| BmrI | ACTGGG | 1 cut(s) | 129 |
| BmsI | GCATC | 1 cut(s) | 160 |
| BmuI | ACTGGG | 1 cut(s) | 129 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 422, 454 |
| BsaBI | GATNNNNATC | 1 cut(s) | 232 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 38, 68 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| Bse1I | ACTGG | 2 cut(s) | 86, 124 |
| Bse8I | GATNNNNATC | 1 cut(s) | 232 |
| BseGI | GGATG | 3 cut(s) | 151, 492, 505 |
| BseJI | GATNNNNATC | 1 cut(s) | 232 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseMII | CTCAG | 3 cut(s) | 27, 273, 465 |
| BseNI | ACTGG | 2 cut(s) | 86, 124 |
| BseRI | GAGGAG | 2 cut(s) | 46, 386 |
| BseXI | GCAGC | 3 cut(s) | 152, 265, 508 |
| BsgI | GTGCAG | 2 cut(s) | 264, 317 |
| BshFI | GGCC | 1 cut(s) | 379 |
| BshNI | GGYRCC | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 1 cut(s) | 74 |
| BslFI | GGGAC | 3 cut(s) | 181, 306, 523 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 94 |
| BsmFI | GGGAC | 3 cut(s) | 181, 306, 523 |
| BsnI | GGCC | 1 cut(s) | 379 |
| Bsp1286I | GDGCHC | 1 cut(s) | 74 |
| BspANI | GGCC | 1 cut(s) | 379 |
| BspCNI | CTCAG | 3 cut(s) | 26, 272, 464 |
| BspLI | GGNNCC | 2 cut(s) | 104, 322 |
| BspMAI | CTGCAG | 1 cut(s) | 526 |
| BspT107I | GGYRCC | 1 cut(s) | 102 |
| BspTI | CTTAAG | 1 cut(s) | 268 |
| BsrI | ACTGG | 2 cut(s) | 86, 124 |
| Bst4CI | ACNGT | 2 cut(s) | 195, 291 |
| BstAFI | CTTAAG | 1 cut(s) | 268 |
| BstDEI | CTNAG | 3 cut(s) | 13, 259, 451 |
| BstF5I | GGATG | 3 cut(s) | 151, 492, 505 |
| BstHHI | GCGC | 1 cut(s) | 170 |
| BstMAI | GTCTC | 1 cut(s) | 94 |
| BstSFI | CTRYAG | 1 cut(s) | 522 |
| BstV1I | GCAGC | 3 cut(s) | 152, 265, 508 |
| BsuRI | GGCC | 1 cut(s) | 379 |
| BtsCI | GGATG | 3 cut(s) | 151, 492, 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 300 |
| CaiI | CAGNNNCTG | 1 cut(s) | 458 |
| CfoI | GCGC | 1 cut(s) | 170 |
| Cfr13I | GGNCC | 1 cut(s) | 320 |
| Csp6I | GTAC | 1 cut(s) | 103 |
| CviAII | CATG | 3 cut(s) | 65, 381, 480 |
| CviJI | RGCY | 7 cut(s) | 165, 210, 263, 278, 379, 457, 521 |
| CviKI_1 | RGCY | 7 cut(s) | 165, 210, 263, 278, 379, 457, 521 |
| CviQI | GTAC | 1 cut(s) | 103 |
| DdeI | CTNAG | 3 cut(s) | 13, 259, 451 |
| DraIII | CACNNNGTG | 1 cut(s) | 245 |
| Eco47I | GGWCC | 1 cut(s) | 320 |
| FaeI | CATG | 3 cut(s) | 68, 384, 483 |
| FaqI | GGGAC | 3 cut(s) | 181, 306, 523 |
| FatI | CATG | 3 cut(s) | 64, 380, 479 |
| Fnu4HI | GCNGC | 3 cut(s) | 166, 279, 522 |
| FokI | GGATG | 3 cut(s) | 138, 499, 512 |
| Fsp4HI | GCNGC | 3 cut(s) | 166, 279, 522 |
| FspBI | CTAG | 3 cut(s) | 81, 144, 243 |
| GlaI | GCGC | 1 cut(s) | 169 |
| GluI | GCNGC | 3 cut(s) | 166, 279, 522 |
| HaeIII | GGCC | 1 cut(s) | 379 |
| HhaI | GCGC | 1 cut(s) | 170 |
| Hin1II | CATG | 3 cut(s) | 68, 384, 483 |
| Hin6I | GCGC | 1 cut(s) | 168 |
| HinP1I | GCGC | 1 cut(s) | 168 |
| HincII | GTYRAC | 2 cut(s) | 203, 339 |
| HindII | GTYRAC | 2 cut(s) | 203, 339 |
| HinfI | GANTC | 5 cut(s) | 11, 20, 215, 228, 511 |
| HphI | GGTGA | 2 cut(s) | 231, 440 |
| Hpy166II | GTNNAC | 2 cut(s) | 203, 339 |
| Hpy188I | TCNGA | 5 cut(s) | 7, 16, 214, 220, 454 |
| Hpy8I | GTNNAC | 2 cut(s) | 203, 339 |
| HpyAV | CCTTC | 4 cut(s) | 87, 138, 165, 359 |
| HpyCH4III | ACNGT | 2 cut(s) | 195, 291 |
| HpyCH4IV | ACGT | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 4 cut(s) | 281, 298, 483, 524 |
| HpyF3I | CTNAG | 3 cut(s) | 13, 259, 451 |
| HpySE526I | ACGT | 1 cut(s) | 50 |
| Hsp92II | CATG | 3 cut(s) | 68, 384, 483 |
| HspAI | GCGC | 1 cut(s) | 168 |
| KpnI | GGTACC | 1 cut(s) | 106 |
| LmnI | GCTCC | 1 cut(s) | 389 |
| LpnPI | CCDG | 7 cut(s) | 99, 105, 327, 336, 434, 469, 471 |
| Lsp1109I | GCAGC | 3 cut(s) | 152, 265, 508 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 3 cut(s) | 81, 144, 243 |
| MaeII | ACGT | 1 cut(s) | 50 |
| MaeIII | GTNAC | 1 cut(s) | 245 |
| MhlI | GDGCHC | 1 cut(s) | 74 |
| MlyI | GAGTC | 3 cut(s) | 5, 14, 505 |
| MnlI | CCTC | 7 cut(s) | 67, 200, 214, 267, 364, 369, 448 |
| MseI | TTAA | 2 cut(s) | 269, 529 |
| MspA1I | CMGCKG | 1 cut(s) | 263 |
| MspCI | CTTAAG | 1 cut(s) | 268 |
| NlaIII | CATG | 3 cut(s) | 68, 384, 483 |
| NlaIV | GGNNCC | 2 cut(s) | 104, 322 |
| NmuCI | GTSAC | 1 cut(s) | 245 |
| PfeI | GAWTC | 2 cut(s) | 215, 228 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 119 |
| PkrI | GCNGC | 3 cut(s) | 167, 280, 523 |
| PleI | GAGTC | 3 cut(s) | 5, 14, 505 |
| PpsI | GAGTC | 3 cut(s) | 5, 14, 505 |
| PspN4I | GGNNCC | 2 cut(s) | 104, 322 |
| PspPI | GGNCC | 1 cut(s) | 320 |
| PstI | CTGCAG | 1 cut(s) | 526 |
| PstNI | CAGNNNCTG | 1 cut(s) | 458 |
| PvuII | CAGCTG | 1 cut(s) | 263 |
| RsaI | GTAC | 1 cut(s) | 104 |
| RsaNI | GTAC | 1 cut(s) | 103 |
| SaqAI | TTAA | 2 cut(s) | 269, 529 |
| SatI | GCNGC | 3 cut(s) | 166, 279, 522 |
| Sau96I | GGNCC | 1 cut(s) | 320 |
| SchI | GAGTC | 3 cut(s) | 5, 14, 505 |
| SduI | GDGCHC | 1 cut(s) | 74 |
| SetI | ASST | 6 cut(s) | 53, 104, 167, 244, 265, 316 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SfcI | CTRYAG | 1 cut(s) | 522 |
| SinI | GGWCC | 1 cut(s) | 320 |
| SmlI | CTYRAG | 1 cut(s) | 268 |
| SmoI | CTYRAG | 1 cut(s) | 268 |
| SpeI | ACTAGT | 1 cut(s) | 143 |
| SspMI | CTAG | 3 cut(s) | 81, 144, 243 |
| TaaI | ACNGT | 2 cut(s) | 195, 291 |
| TaiI | ACGT | 1 cut(s) | 53 |
| TaqI | TCGA | 1 cut(s) | 140 |
| TfiI | GAWTC | 2 cut(s) | 215, 228 |
| Tru1I | TTAA | 2 cut(s) | 269, 529 |
| Tru9I | TTAA | 2 cut(s) | 269, 529 |
| TscAI | CASTG | 1 cut(s) | 300 |
| TseFI | GTSAC | 1 cut(s) | 245 |
| TseI | GCWGC | 3 cut(s) | 165, 278, 521 |
| Tsp45I | GTSAC | 1 cut(s) | 245 |
| TspDTI | ATGAA | 3 cut(s) | 407, 423, 506 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 1 cut(s) | 300 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 119 |
| Vha464I | CTTAAG | 1 cut(s) | 268 |
| VpaK11BI | GGWCC | 1 cut(s) | 320 |
| XspI | CTAG | 3 cut(s) | 81, 144, 243 |