BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 337, 488, 543 |
| AcuI | CTGAAG | 1 cut(s) | 450 |
| AdeI | CACNNNGTG | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 488 |
| AgsI | TTSAA | 2 cut(s) | 232, 425 |
| AluBI | AGCT | 2 cut(s) | 311, 428 |
| AluI | AGCT | 2 cut(s) | 311, 428 |
| Alw26I | GTCTC | 1 cut(s) | 163 |
| Ama87I | CYCGRG | 1 cut(s) | 148 |
| AoxI | GGCC | 1 cut(s) | 367 |
| ApeKI | GCWGC | 3 cut(s) | 213, 326, 436 |
| AspS9I | GGNCC | 1 cut(s) | 368 |
| AsuC2I | CCSGG | 1 cut(s) | 400 |
| AsuHPI | GGTGA | 2 cut(s) | 57, 279 |
| AvaI | CYCGRG | 1 cut(s) | 148 |
| BbvI | GCAGC | 3 cut(s) | 200, 313, 448 |
| BccI | CCATC | 1 cut(s) | 289 |
| BciVI | GTATCC | 1 cut(s) | 424 |
| BcnI | CCSGG | 1 cut(s) | 400 |
| BcoDI | GTCTC | 1 cut(s) | 163 |
| BfaI | CTAG | 1 cut(s) | 291 |
| BfmI | CTRYAG | 1 cut(s) | 579 |
| BfuI | GTATCC | 1 cut(s) | 424 |
| BisI | GCNGC | 3 cut(s) | 214, 327, 437 |
| BlsI | GCNGC | 3 cut(s) | 215, 328, 438 |
| Bme1390I | CCNGG | 1 cut(s) | 400 |
| BmeT110I | CYCGRG | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 1 cut(s) | 368 |
| BmiI | GGNNCC | 2 cut(s) | 397, 516 |
| BmrFI | CCNGG | 1 cut(s) | 400 |
| BpuEI | CTTGAG | 1 cut(s) | 337 |
| BpuMI | CCSGG | 1 cut(s) | 400 |
| BsaBI | GATNNNNATC | 1 cut(s) | 280 |
| BsaJI | CCNNGG | 1 cut(s) | 38 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 488 |
| Bse8I | GATNNNNATC | 1 cut(s) | 280 |
| BseDI | CCNNGG | 1 cut(s) | 38 |
| BseGI | GGATG | 3 cut(s) | 49, 552, 565 |
| BseJI | GATNNNNATC | 1 cut(s) | 280 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 488 |
| BseMII | CTCAG | 2 cut(s) | 96, 321 |
| BseRI | GAGGAG | 2 cut(s) | 115, 334 |
| BseXI | GCAGC | 3 cut(s) | 200, 313, 448 |
| BseYI | CCCAGC | 1 cut(s) | 240 |
| BsgI | GTGCAG | 2 cut(s) | 199, 312 |
| BshFI | GGCC | 1 cut(s) | 369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 148 |
| BsiSI | CCGG | 1 cut(s) | 399 |
| BslFI | GGGAC | 1 cut(s) | 488 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 488 |
| BsmAI | GTCTC | 1 cut(s) | 163 |
| BsmFI | GGGAC | 1 cut(s) | 488 |
| BsnI | GGCC | 1 cut(s) | 369 |
| BsoBI | CYCGRG | 1 cut(s) | 148 |
| BspACI | CCGC | 3 cut(s) | 337, 488, 543 |
| BspANI | GGCC | 1 cut(s) | 369 |
| BspCNI | CTCAG | 2 cut(s) | 95, 320 |
| BspLI | GGNNCC | 2 cut(s) | 397, 516 |
| BspMAI | CTGCAG | 1 cut(s) | 583 |
| BspQI | GCTCTTC | 1 cut(s) | 426 |
| BssECI | CCNNGG | 1 cut(s) | 38 |
| BssT1I | CCWWGG | 1 cut(s) | 38 |
| Bst4CI | ACNGT | 2 cut(s) | 220, 375 |
| Bst6I | CTCTTC | 1 cut(s) | 426 |
| BstC8I | GCNNGC | 2 cut(s) | 363, 367 |
| BstDEI | CTNAG | 2 cut(s) | 82, 307 |
| BstF5I | GGATG | 3 cut(s) | 49, 552, 565 |
| BstMAI | GTCTC | 1 cut(s) | 163 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 343 |
| BstSCI | CCNGG | 1 cut(s) | 398 |
| BstSFI | CTRYAG | 1 cut(s) | 579 |
| BstV1I | GCAGC | 3 cut(s) | 200, 313, 448 |
| BsuI | GTATCC | 1 cut(s) | 424 |
| BsuRI | GGCC | 1 cut(s) | 369 |
| BtsCI | GGATG | 3 cut(s) | 49, 552, 565 |
| BtsIMutI | CAGTG | 1 cut(s) | 216 |
| Cac8I | GCNNGC | 2 cut(s) | 363, 367 |
| Cfr13I | GGNCC | 1 cut(s) | 368 |
| CviAII | CATG | 3 cut(s) | 209, 441, 451 |
| DdeI | CTNAG | 2 cut(s) | 82, 307 |
| DraI | TTTAAA | 1 cut(s) | 526 |
| DraIII | CACNNNGTG | 1 cut(s) | 293 |
| Eam1104I | CTCTTC | 1 cut(s) | 426 |
| EarI | CTCTTC | 1 cut(s) | 426 |
| Eco130I | CCWWGG | 1 cut(s) | 38 |
| Eco57I | CTGAAG | 1 cut(s) | 450 |
| Eco88I | CYCGRG | 1 cut(s) | 148 |
| EcoT14I | CCWWGG | 1 cut(s) | 38 |
| ErhI | CCWWGG | 1 cut(s) | 38 |
| FaeI | CATG | 3 cut(s) | 212, 444, 454 |
| FaiI | YATR | 8 cut(s) | 113, 168, 210, 381, 442, 452, 503, 557 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 169, 201 |
| FaqI | GGGAC | 1 cut(s) | 488 |
| FatI | CATG | 3 cut(s) | 208, 440, 450 |
| FauI | CCCGC | 2 cut(s) | 481, 536 |
| Fnu4HI | GCNGC | 3 cut(s) | 214, 327, 437 |
| FokI | GGATG | 3 cut(s) | 56, 559, 572 |
| Fsp4HI | GCNGC | 3 cut(s) | 214, 327, 437 |
| FspBI | CTAG | 1 cut(s) | 291 |
| GluI | GCNGC | 3 cut(s) | 214, 327, 437 |
| GsaI | CCCAGC | 1 cut(s) | 244 |
| HaeIII | GGCC | 1 cut(s) | 369 |
| HapII | CCGG | 1 cut(s) | 399 |
| Hin1II | CATG | 3 cut(s) | 212, 444, 454 |
| HincII | GTYRAC | 1 cut(s) | 251 |
| HindII | GTYRAC | 1 cut(s) | 251 |
| HinfI | GANTC | 7 cut(s) | 5, 80, 89, 151, 263, 276, 575 |
| HpaII | CCGG | 1 cut(s) | 399 |
| HphI | GGTGA | 2 cut(s) | 57, 279 |
| Hpy166II | GTNNAC | 2 cut(s) | 206, 251 |
| Hpy188I | TCNGA | 7 cut(s) | 22, 76, 85, 198, 262, 268, 418 |
| Hpy188III | TCNNGA | 1 cut(s) | 93 |
| Hpy8I | GTNNAC | 2 cut(s) | 206, 251 |
| HpyAV | CCTTC | 1 cut(s) | 195 |
| HpyCH4III | ACNGT | 2 cut(s) | 220, 375 |
| HpyCH4V | TGCA | 4 cut(s) | 216, 329, 346, 581 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 343 |
| HpyF3I | CTNAG | 2 cut(s) | 82, 307 |
| Hsp92II | CATG | 3 cut(s) | 212, 444, 454 |
| LguI | GCTCTTC | 1 cut(s) | 426 |
| LmnI | GCTCC | 4 cut(s) | 128, 242, 449, 514 |
| LpnPI | CCDG | 9 cut(s) | 24, 147, 168, 254, 351, 375, 412, 423, 531 |
| Lsp1109I | GCAGC | 3 cut(s) | 200, 313, 448 |
| MaeI | CTAG | 1 cut(s) | 291 |
| MaeIII | GTNAC | 2 cut(s) | 220, 302 |
| MboII | GAAGA | 2 cut(s) | 443, 489 |
| MfeI | CAATTG | 1 cut(s) | 483 |
| MluCI | AATT | 2 cut(s) | 226, 483 |
| MlyI | GAGTC | 3 cut(s) | 74, 83, 160 |
| MmeI | TCCRAC | 2 cut(s) | 366, 531 |
| MnlI | CCTC | 9 cut(s) | 70, 136, 157, 248, 255, 262, 312, 315, 465 |
| MseI | TTAA | 2 cut(s) | 525, 586 |
| MspA1I | CMGCKG | 1 cut(s) | 311 |
| MspI | CCGG | 1 cut(s) | 399 |
| MspR9I | CCNGG | 1 cut(s) | 400 |
| MunI | CAATTG | 1 cut(s) | 483 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 343 |
| NciI | CCSGG | 1 cut(s) | 400 |
| NlaIII | CATG | 3 cut(s) | 212, 444, 454 |
| NlaIV | GGNNCC | 2 cut(s) | 397, 516 |
| NmuCI | GTSAC | 2 cut(s) | 220, 302 |
| PaeR7I | CTCGAG | 1 cut(s) | 148 |
| PciSI | GCTCTTC | 1 cut(s) | 426 |
| PfeI | GAWTC | 4 cut(s) | 5, 263, 276, 575 |
| PkrI | GCNGC | 3 cut(s) | 215, 328, 438 |
| PleI | GAGTC | 3 cut(s) | 74, 83, 159 |
| PpsI | GAGTC | 3 cut(s) | 74, 83, 159 |
| PspFI | CCCAGC | 1 cut(s) | 240 |
| PspN4I | GGNNCC | 2 cut(s) | 397, 516 |
| PspPI | GGNCC | 1 cut(s) | 368 |
| PspXI | VCTCGAGB | 1 cut(s) | 148 |
| PstI | CTGCAG | 1 cut(s) | 583 |
| PvuII | CAGCTG | 1 cut(s) | 311 |
| SapI | GCTCTTC | 1 cut(s) | 426 |
| SaqAI | TTAA | 2 cut(s) | 525, 586 |
| SatI | GCNGC | 3 cut(s) | 214, 327, 437 |
| Sau96I | GGNCC | 1 cut(s) | 368 |
| SchI | GAGTC | 3 cut(s) | 74, 83, 160 |
| ScrFI | CCNGG | 1 cut(s) | 400 |
| SetI | ASST | 6 cut(s) | 20, 29, 136, 292, 313, 430 |
| SfcI | CTRYAG | 1 cut(s) | 579 |
| Sfr274I | CTCGAG | 1 cut(s) | 148 |
| SlaI | CTCGAG | 1 cut(s) | 148 |
| SmlI | CTYRAG | 2 cut(s) | 148, 316 |
| SmoI | CTYRAG | 2 cut(s) | 148, 316 |
| Sse9I | AATT | 2 cut(s) | 226, 483 |
| SsiI | CCGC | 3 cut(s) | 337, 488, 543 |
| SspI | AATATT | 1 cut(s) | 62 |
| SspMI | CTAG | 1 cut(s) | 291 |
| StyD4I | CCNGG | 1 cut(s) | 398 |
| StyI | CCWWGG | 1 cut(s) | 38 |
| TaaI | ACNGT | 2 cut(s) | 220, 375 |
| TaqI | TCGA | 2 cut(s) | 94, 149 |
| TasI | AATT | 2 cut(s) | 226, 483 |
| TfiI | GAWTC | 4 cut(s) | 5, 263, 276, 575 |
| Tru1I | TTAA | 2 cut(s) | 525, 586 |
| Tru9I | TTAA | 2 cut(s) | 525, 586 |
| TscAI | CASTG | 1 cut(s) | 223 |
| TseFI | GTSAC | 2 cut(s) | 220, 302 |
| TseI | GCWGC | 3 cut(s) | 213, 326, 436 |
| Tsp45I | GTSAC | 2 cut(s) | 220, 302 |
| TspDTI | ATGAA | 1 cut(s) | 467 |
| TspGWI | ACGGA | 1 cut(s) | 527 |
| TspRI | CASTG | 1 cut(s) | 223 |
| XhoI | CTCGAG | 1 cut(s) | 148 |
| XspI | CTAG | 1 cut(s) | 291 |