BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 414 |
| AccB1I | GGYRCC | 1 cut(s) | 414 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 431 |
| AciI | CCGC | 3 cut(s) | 81, 99, 105 |
| AclWI | GGATC | 2 cut(s) | 122, 218 |
| AcuI | CTGAAG | 1 cut(s) | 153 |
| AdeI | CACNNNGTG | 1 cut(s) | 557 |
| AfaI | GTAC | 1 cut(s) | 416 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 431 |
| AflII | CTTAAG | 1 cut(s) | 580 |
| AflIII | ACRYGT | 1 cut(s) | 360 |
| AgsI | TTSAA | 5 cut(s) | 205, 444, 496, 677, 778 |
| AhlI | ACTAGT | 1 cut(s) | 455 |
| AluBI | AGCT | 3 cut(s) | 18, 477, 575 |
| AluI | AGCT | 3 cut(s) | 18, 477, 575 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 386 |
| Alw26I | GTCTC | 1 cut(s) | 406 |
| AlwI | GGATC | 2 cut(s) | 122, 218 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 770 |
| AoxI | GGCC | 1 cut(s) | 689 |
| ApeKI | GCWGC | 3 cut(s) | 477, 590, 833 |
| Asp718I | GGTACC | 1 cut(s) | 414 |
| AspLEI | GCGC | 1 cut(s) | 482 |
| AspS9I | GGNCC | 1 cut(s) | 632 |
| AsuHPI | GGTGA | 5 cut(s) | 54, 60, 300, 543, 752 |
| AvaII | GGWCC | 1 cut(s) | 632 |
| BanI | GGYRCC | 1 cut(s) | 414 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 386 |
| BbvI | GCAGC | 3 cut(s) | 464, 577, 820 |
| BccI | CCATC | 3 cut(s) | 79, 553, 646 |
| BcoDI | GTCTC | 1 cut(s) | 406 |
| BcuI | ACTAGT | 1 cut(s) | 455 |
| BfaI | CTAG | 4 cut(s) | 198, 393, 456, 555 |
| BfmI | CTRYAG | 1 cut(s) | 834 |
| BfrI | CTTAAG | 1 cut(s) | 580 |
| BisI | GCNGC | 3 cut(s) | 478, 591, 834 |
| BlsI | GCNGC | 3 cut(s) | 479, 592, 835 |
| Bme18I | GGWCC | 1 cut(s) | 632 |
| BmgT120I | GGNCC | 1 cut(s) | 632 |
| BmiI | GGNNCC | 2 cut(s) | 416, 634 |
| BmrI | ACTGGG | 1 cut(s) | 441 |
| BmsI | GCATC | 7 cut(s) | 92, 98, 104, 110, 116, 203, 472 |
| BmuI | ACTGGG | 1 cut(s) | 441 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 213, 245, 734, 766 |
| BsaBI | GATNNNNATC | 1 cut(s) | 544 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 350, 380 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 431 |
| Bse1I | ACTGG | 2 cut(s) | 398, 436 |
| Bse8I | GATNNNNATC | 1 cut(s) | 544 |
| BseGI | GGATG | 6 cut(s) | 95, 101, 292, 463, 804, 817 |
| BseJI | GATNNNNATC | 1 cut(s) | 544 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BseMII | CTCAG | 5 cut(s) | 33, 193, 339, 585, 777 |
| BseNI | ACTGG | 2 cut(s) | 398, 436 |
| BseRI | GAGGAG | 2 cut(s) | 358, 698 |
| BseXI | GCAGC | 3 cut(s) | 464, 577, 820 |
| BsgI | GTGCAG | 2 cut(s) | 576, 629 |
| BshFI | GGCC | 1 cut(s) | 691 |
| BshNI | GGYRCC | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 386 |
| BslFI | GGGAC | 3 cut(s) | 493, 618, 835 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BsmAI | GTCTC | 1 cut(s) | 406 |
| BsmFI | GGGAC | 3 cut(s) | 493, 618, 835 |
| BsnI | GGCC | 1 cut(s) | 691 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 386 |
| Bsp143I | GATC | 3 cut(s) | 127, 186, 223 |
| BspACI | CCGC | 3 cut(s) | 81, 99, 105 |
| BspANI | GGCC | 1 cut(s) | 691 |
| BspCNI | CTCAG | 5 cut(s) | 32, 192, 338, 584, 776 |
| BspLI | GGNNCC | 2 cut(s) | 416, 634 |
| BspMAI | CTGCAG | 1 cut(s) | 838 |
| BspPI | GGATC | 2 cut(s) | 122, 218 |
| BspT107I | GGYRCC | 1 cut(s) | 414 |
| BspTI | CTTAAG | 1 cut(s) | 580 |
| BsrI | ACTGG | 2 cut(s) | 398, 436 |
| BssMI | GATC | 3 cut(s) | 127, 186, 223 |
| Bst4CI | ACNGT | 4 cut(s) | 66, 217, 507, 603 |
| BstAFI | CTTAAG | 1 cut(s) | 580 |
| BstDEI | CTNAG | 6 cut(s) | 19, 179, 298, 325, 571, 763 |
| BstF5I | GGATG | 6 cut(s) | 95, 101, 292, 463, 804, 817 |
| BstHHI | GCGC | 1 cut(s) | 482 |
| BstKTI | GATC | 3 cut(s) | 130, 189, 226 |
| BstMAI | GTCTC | 1 cut(s) | 406 |
| BstMBI | GATC | 3 cut(s) | 127, 186, 223 |
| BstSFI | CTRYAG | 1 cut(s) | 834 |
| BstV1I | GCAGC | 3 cut(s) | 464, 577, 820 |
| BstX2I | RGATCY | 2 cut(s) | 127, 223 |
| BstYI | RGATCY | 2 cut(s) | 127, 223 |
| BsuRI | GGCC | 1 cut(s) | 691 |
| BtsCI | GGATG | 6 cut(s) | 95, 101, 292, 463, 804, 817 |
| BtsIMutI | CAGTG | 1 cut(s) | 612 |
| CaiI | CAGNNNCTG | 1 cut(s) | 770 |
| CfoI | GCGC | 1 cut(s) | 482 |
| Cfr13I | GGNCC | 1 cut(s) | 632 |
| Csp6I | GTAC | 1 cut(s) | 415 |
| CviAII | CATG | 6 cut(s) | 190, 244, 271, 377, 693, 792 |
| CviJI | RGCY | 8 cut(s) | 18, 477, 522, 575, 590, 691, 769, 833 |
| CviKI_1 | RGCY | 8 cut(s) | 18, 477, 522, 575, 590, 691, 769, 833 |
| CviQI | GTAC | 1 cut(s) | 415 |
| DdeI | CTNAG | 6 cut(s) | 19, 179, 298, 325, 571, 763 |
| DpnI | GATC | 3 cut(s) | 129, 188, 225 |
| DpnII | GATC | 3 cut(s) | 127, 186, 223 |
| DraIII | CACNNNGTG | 1 cut(s) | 557 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco47I | GGWCC | 1 cut(s) | 632 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 153 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| FaeI | CATG | 6 cut(s) | 193, 247, 274, 380, 696, 795 |
| FaqI | GGGAC | 3 cut(s) | 493, 618, 835 |
| FatI | CATG | 6 cut(s) | 189, 243, 270, 376, 692, 791 |
| FauI | CCCGC | 1 cut(s) | 88 |
| Fnu4HI | GCNGC | 3 cut(s) | 478, 591, 834 |
| FokI | GGATG | 6 cut(s) | 82, 88, 299, 450, 811, 824 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 3 cut(s) | 478, 591, 834 |
| FspBI | CTAG | 4 cut(s) | 198, 393, 456, 555 |
| GlaI | GCGC | 1 cut(s) | 481 |
| GluI | GCNGC | 3 cut(s) | 478, 591, 834 |
| HaeIII | GGCC | 1 cut(s) | 691 |
| HhaI | GCGC | 1 cut(s) | 482 |
| Hin1II | CATG | 6 cut(s) | 193, 247, 274, 380, 696, 795 |
| Hin6I | GCGC | 1 cut(s) | 480 |
| HinP1I | GCGC | 1 cut(s) | 480 |
| HincII | GTYRAC | 2 cut(s) | 515, 651 |
| HindII | GTYRAC | 2 cut(s) | 515, 651 |
| HinfI | GANTC | 6 cut(s) | 248, 323, 332, 527, 540, 823 |
| HphI | GGTGA | 5 cut(s) | 54, 60, 300, 543, 752 |
| Hpy166II | GTNNAC | 3 cut(s) | 145, 515, 651 |
| Hpy188I | TCNGA | 7 cut(s) | 43, 265, 319, 328, 526, 532, 766 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 111, 131 |
| Hpy8I | GTNNAC | 3 cut(s) | 145, 515, 651 |
| HpyAV | CCTTC | 4 cut(s) | 399, 450, 477, 671 |
| HpyCH4III | ACNGT | 4 cut(s) | 66, 217, 507, 603 |
| HpyCH4IV | ACGT | 1 cut(s) | 362 |
| HpyCH4V | TGCA | 8 cut(s) | 89, 95, 257, 281, 593, 610, 795, 836 |
| HpyF3I | CTNAG | 6 cut(s) | 19, 179, 298, 325, 571, 763 |
| HpySE526I | ACGT | 1 cut(s) | 362 |
| Hsp92II | CATG | 6 cut(s) | 193, 247, 274, 380, 696, 795 |
| HspAI | GCGC | 1 cut(s) | 480 |
| KpnI | GGTACC | 1 cut(s) | 418 |
| Kzo9I | GATC | 3 cut(s) | 127, 186, 223 |
| LmnI | GCTCC | 1 cut(s) | 701 |
| Lsp1109I | GCAGC | 3 cut(s) | 464, 577, 820 |
| LweI | GCATC | 7 cut(s) | 92, 98, 104, 110, 116, 203, 472 |
| MaeI | CTAG | 4 cut(s) | 198, 393, 456, 555 |
| MaeII | ACGT | 1 cut(s) | 362 |
| MaeIII | GTNAC | 2 cut(s) | 66, 557 |
| MalI | GATC | 3 cut(s) | 129, 188, 225 |
| MboI | GATC | 3 cut(s) | 127, 186, 223 |
| MboII | GAAGA | 2 cut(s) | 45, 146 |
| MflI | RGATCY | 2 cut(s) | 127, 223 |
| MhlI | GDGCHC | 2 cut(s) | 20, 386 |
| MluCI | AATT | 1 cut(s) | 154 |
| MlyI | GAGTC | 3 cut(s) | 317, 326, 817 |
| MmeI | TCCRAC | 1 cut(s) | 199 |
| MseI | TTAA | 2 cut(s) | 581, 841 |
| MspA1I | CMGCKG | 1 cut(s) | 575 |
| MspCI | CTTAAG | 1 cut(s) | 580 |
| NdeII | GATC | 3 cut(s) | 127, 186, 223 |
| NlaIII | CATG | 6 cut(s) | 193, 247, 274, 380, 696, 795 |
| NlaIV | GGNNCC | 2 cut(s) | 416, 634 |
| NmuCI | GTSAC | 2 cut(s) | 66, 557 |
| PfeI | GAWTC | 3 cut(s) | 248, 527, 540 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 431 |
| PkrI | GCNGC | 3 cut(s) | 479, 592, 835 |
| PleI | GAGTC | 3 cut(s) | 317, 326, 817 |
| PpsI | GAGTC | 3 cut(s) | 317, 326, 817 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PspN4I | GGNNCC | 2 cut(s) | 416, 634 |
| PspPI | GGNCC | 1 cut(s) | 632 |
| PstI | CTGCAG | 1 cut(s) | 838 |
| PstNI | CAGNNNCTG | 1 cut(s) | 770 |
| PsuI | RGATCY | 2 cut(s) | 127, 223 |
| PvuII | CAGCTG | 1 cut(s) | 575 |
| RsaI | GTAC | 1 cut(s) | 416 |
| RsaNI | GTAC | 1 cut(s) | 415 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 2 cut(s) | 581, 841 |
| SatI | GCNGC | 3 cut(s) | 478, 591, 834 |
| Sau3AI | GATC | 3 cut(s) | 127, 186, 223 |
| Sau96I | GGNCC | 1 cut(s) | 632 |
| SchI | GAGTC | 3 cut(s) | 317, 326, 817 |
| SduI | GDGCHC | 2 cut(s) | 20, 386 |
| SfaNI | GCATC | 7 cut(s) | 92, 98, 104, 110, 116, 203, 472 |
| SfcI | CTRYAG | 1 cut(s) | 834 |
| SinI | GGWCC | 1 cut(s) | 632 |
| SmlI | CTYRAG | 1 cut(s) | 580 |
| SmoI | CTYRAG | 1 cut(s) | 580 |
| SpeI | ACTAGT | 1 cut(s) | 455 |
| Sse9I | AATT | 1 cut(s) | 154 |
| SsiI | CCGC | 3 cut(s) | 81, 99, 105 |
| SspMI | CTAG | 4 cut(s) | 198, 393, 456, 555 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| TaaI | ACNGT | 4 cut(s) | 66, 217, 507, 603 |
| TaiI | ACGT | 1 cut(s) | 365 |
| TaqI | TCGA | 3 cut(s) | 74, 150, 452 |
| TasI | AATT | 1 cut(s) | 154 |
| TfiI | GAWTC | 3 cut(s) | 248, 527, 540 |
| Tru1I | TTAA | 2 cut(s) | 581, 841 |
| Tru9I | TTAA | 2 cut(s) | 581, 841 |
| TscAI | CASTG | 1 cut(s) | 612 |
| TseFI | GTSAC | 2 cut(s) | 66, 557 |
| TseI | GCWGC | 3 cut(s) | 477, 590, 833 |
| Tsp45I | GTSAC | 2 cut(s) | 66, 557 |
| TspDTI | ATGAA | 5 cut(s) | 39, 45, 719, 735, 818 |
| TspGWI | ACGGA | 1 cut(s) | 396 |
| TspRI | CASTG | 1 cut(s) | 612 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 431 |
| Vha464I | CTTAAG | 1 cut(s) | 580 |
| VpaK11BI | GGWCC | 1 cut(s) | 632 |
| XspI | CTAG | 4 cut(s) | 198, 393, 456, 555 |