BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 444 |
| AccB1I | GGYRCC | 1 cut(s) | 444 |
| AccIII | TCCGGA | 1 cut(s) | 7 |
| AciI | CCGC | 7 cut(s) | 27, 33, 57, 96, 142, 610, 761 |
| AclWI | GGATC | 2 cut(s) | 146, 242 |
| AcuI | CTGAAG | 2 cut(s) | 177, 723 |
| AdeI | CACNNNGTG | 1 cut(s) | 566 |
| AfaI | GTAC | 1 cut(s) | 446 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 761 |
| AgsI | TTSAA | 3 cut(s) | 229, 505, 698 |
| AluBI | AGCT | 3 cut(s) | 18, 584, 701 |
| AluI | AGCT | 3 cut(s) | 18, 584, 701 |
| Alw21I | GWGCWC | 1 cut(s) | 20 |
| Alw26I | GTCTC | 2 cut(s) | 436, 674 |
| AlwI | GGATC | 2 cut(s) | 146, 242 |
| Ama87I | CYCGRG | 1 cut(s) | 421 |
| Aor13HI | TCCGGA | 1 cut(s) | 7 |
| AoxI | GGCC | 2 cut(s) | 58, 640 |
| ApeKI | GCWGC | 4 cut(s) | 98, 486, 599, 709 |
| Asp718I | GGTACC | 1 cut(s) | 444 |
| AspS9I | GGNCC | 2 cut(s) | 59, 641 |
| AsuC2I | CCSGG | 1 cut(s) | 673 |
| AsuHPI | GGTGA | 3 cut(s) | 114, 330, 552 |
| AvaI | CYCGRG | 1 cut(s) | 421 |
| BanI | GGYRCC | 1 cut(s) | 444 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| Bbv12I | GWGCWC | 1 cut(s) | 20 |
| BbvI | GCAGC | 4 cut(s) | 85, 473, 586, 721 |
| BccI | CCATC | 3 cut(s) | 133, 139, 562 |
| BcnI | CCSGG | 1 cut(s) | 673 |
| BcoDI | GTCTC | 2 cut(s) | 436, 674 |
| BfaI | CTAG | 2 cut(s) | 222, 564 |
| BfmI | CTRYAG | 1 cut(s) | 852 |
| BisI | GCNGC | 5 cut(s) | 58, 99, 487, 600, 710 |
| BlsI | GCNGC | 5 cut(s) | 59, 100, 488, 601, 711 |
| Bme1390I | CCNGG | 1 cut(s) | 673 |
| BmeT110I | CYCGRG | 1 cut(s) | 421 |
| BmgT120I | GGNCC | 2 cut(s) | 59, 641 |
| BmiI | GGNNCC | 3 cut(s) | 446, 670, 789 |
| BmrFI | CCNGG | 1 cut(s) | 673 |
| BmsI | GCATC | 3 cut(s) | 101, 110, 227 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 34, 237, 269 |
| BpmI | CTGGAG | 1 cut(s) | 267 |
| BpuEI | CTTGAG | 1 cut(s) | 610 |
| BpuMI | CCSGG | 1 cut(s) | 673 |
| BsaBI | GATNNNNATC | 1 cut(s) | 553 |
| BsaJI | CCNNGG | 1 cut(s) | 311 |
| BsaWI | WCCGGW | 1 cut(s) | 7 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 243, 273 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 761 |
| Bse8I | GATNNNNATC | 1 cut(s) | 553 |
| BseAI | TCCGGA | 1 cut(s) | 7 |
| BseDI | CCNNGG | 1 cut(s) | 311 |
| BseGI | GGATG | 5 cut(s) | 92, 322, 364, 825, 838 |
| BseJI | GATNNNNATC | 1 cut(s) | 553 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 761 |
| BseMII | CTCAG | 2 cut(s) | 217, 594 |
| BseRI | GAGGAG | 3 cut(s) | 57, 388, 607 |
| BseXI | GCAGC | 4 cut(s) | 85, 473, 586, 721 |
| BseYI | CCCAGC | 1 cut(s) | 513 |
| BsgI | GTGCAG | 3 cut(s) | 472, 585, 835 |
| BshFI | GGCC | 2 cut(s) | 60, 642 |
| BshNI | GGYRCC | 1 cut(s) | 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 20 |
| BsiHKCI | CYCGRG | 1 cut(s) | 421 |
| BsiSI | CCGG | 2 cut(s) | 8, 672 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 761 |
| BsmAI | GTCTC | 2 cut(s) | 436, 674 |
| BsnI | GGCC | 2 cut(s) | 60, 642 |
| BsoBI | CYCGRG | 1 cut(s) | 421 |
| Bsp1286I | GDGCHC | 1 cut(s) | 20 |
| Bsp13I | TCCGGA | 1 cut(s) | 7 |
| Bsp143I | GATC | 2 cut(s) | 151, 247 |
| BspACI | CCGC | 7 cut(s) | 27, 33, 57, 96, 142, 610, 761 |
| BspANI | GGCC | 2 cut(s) | 60, 642 |
| BspCNI | CTCAG | 2 cut(s) | 216, 593 |
| BspEI | TCCGGA | 1 cut(s) | 7 |
| BspLI | GGNNCC | 3 cut(s) | 446, 670, 789 |
| BspMAI | CTGCAG | 1 cut(s) | 856 |
| BspPI | GGATC | 2 cut(s) | 146, 242 |
| BspQI | GCTCTTC | 1 cut(s) | 699 |
| BspT107I | GGYRCC | 1 cut(s) | 444 |
| BssECI | CCNNGG | 1 cut(s) | 311 |
| BssMI | GATC | 2 cut(s) | 151, 247 |
| BssT1I | CCWWGG | 1 cut(s) | 311 |
| Bst4CI | ACNGT | 4 cut(s) | 241, 493, 648, 685 |
| Bst6I | CTCTTC | 2 cut(s) | 34, 699 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 98 |
| BstC8I | GCNNGC | 2 cut(s) | 636, 640 |
| BstDEI | CTNAG | 2 cut(s) | 203, 580 |
| BstF5I | GGATG | 5 cut(s) | 92, 322, 364, 825, 838 |
| BstKTI | GATC | 2 cut(s) | 154, 250 |
| BstMAI | GTCTC | 2 cut(s) | 436, 674 |
| BstMBI | GATC | 2 cut(s) | 151, 247 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 24, 98, 523, 616 |
| BstSCI | CCNGG | 1 cut(s) | 671 |
| BstSFI | CTRYAG | 1 cut(s) | 852 |
| BstV1I | GCAGC | 4 cut(s) | 85, 473, 586, 721 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BstX2I | RGATCY | 2 cut(s) | 151, 247 |
| BstYI | RGATCY | 2 cut(s) | 151, 247 |
| BsuRI | GGCC | 2 cut(s) | 60, 642 |
| BtsCI | GGATG | 5 cut(s) | 92, 322, 364, 825, 838 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| Cac8I | GCNNGC | 2 cut(s) | 636, 640 |
| Cfr13I | GGNCC | 2 cut(s) | 59, 641 |
| Csp6I | GTAC | 1 cut(s) | 445 |
| CviAII | CATG | 4 cut(s) | 274, 482, 714, 724 |
| CviQI | GTAC | 1 cut(s) | 445 |
| DdeI | CTNAG | 2 cut(s) | 203, 580 |
| DpnI | GATC | 2 cut(s) | 153, 249 |
| DpnII | GATC | 2 cut(s) | 151, 247 |
| DraI | TTTAAA | 1 cut(s) | 799 |
| DraIII | CACNNNGTG | 1 cut(s) | 566 |
| Eam1104I | CTCTTC | 2 cut(s) | 34, 699 |
| EarI | CTCTTC | 2 cut(s) | 34, 699 |
| EciI | GGCGGA | 2 cut(s) | 42, 48 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco130I | CCWWGG | 1 cut(s) | 311 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 2 cut(s) | 177, 723 |
| Eco88I | CYCGRG | 1 cut(s) | 421 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoT14I | CCWWGG | 1 cut(s) | 311 |
| EcoT22I | ATGCAT | 1 cut(s) | 94 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| ErhI | CCWWGG | 1 cut(s) | 311 |
| FaeI | CATG | 4 cut(s) | 277, 485, 717, 727 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 442, 474 |
| FatI | CATG | 4 cut(s) | 273, 481, 713, 723 |
| FauI | CCCGC | 1 cut(s) | 754 |
| Fnu4HI | GCNGC | 5 cut(s) | 58, 99, 487, 600, 710 |
| FokI | GGATG | 5 cut(s) | 79, 329, 371, 832, 845 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 5 cut(s) | 58, 99, 487, 600, 710 |
| FspBI | CTAG | 2 cut(s) | 222, 564 |
| GluI | GCNGC | 5 cut(s) | 58, 99, 487, 600, 710 |
| GsaI | CCCAGC | 1 cut(s) | 517 |
| GsuI | CTGGAG | 1 cut(s) | 267 |
| HaeIII | GGCC | 2 cut(s) | 60, 642 |
| HapII | CCGG | 2 cut(s) | 8, 672 |
| Hin1II | CATG | 4 cut(s) | 277, 485, 717, 727 |
| HpaII | CCGG | 2 cut(s) | 8, 672 |
| HphI | GGTGA | 3 cut(s) | 114, 330, 552 |
| Hpy166II | GTNNAC | 2 cut(s) | 169, 479 |
| Hpy188I | TCNGA | 8 cut(s) | 295, 349, 358, 471, 535, 541, 691, 756 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 155, 366 |
| Hpy8I | GTNNAC | 2 cut(s) | 169, 479 |
| HpyAV | CCTTC | 1 cut(s) | 468 |
| HpyCH4III | ACNGT | 4 cut(s) | 241, 493, 648, 685 |
| HpyCH4V | TGCA | 8 cut(s) | 86, 92, 101, 489, 602, 619, 816, 854 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 24, 98, 523, 616 |
| HpyF3I | CTNAG | 2 cut(s) | 203, 580 |
| Hsp92II | CATG | 4 cut(s) | 277, 485, 717, 727 |
| Kpn2I | TCCGGA | 1 cut(s) | 7 |
| KpnI | GGTACC | 1 cut(s) | 448 |
| Kzo9I | GATC | 2 cut(s) | 151, 247 |
| LguI | GCTCTTC | 1 cut(s) | 699 |
| LmnI | GCTCC | 5 cut(s) | 144, 401, 515, 722, 787 |
| Lsp1109I | GCAGC | 4 cut(s) | 85, 473, 586, 721 |
| LweI | GCATC | 3 cut(s) | 101, 110, 227 |
| MaeI | CTAG | 2 cut(s) | 222, 564 |
| MaeIII | GTNAC | 2 cut(s) | 493, 575 |
| MalI | GATC | 2 cut(s) | 153, 249 |
| MboI | GATC | 2 cut(s) | 151, 247 |
| MboII | GAAGA | 7 cut(s) | 51, 66, 108, 111, 170, 716, 762 |
| MflI | RGATCY | 2 cut(s) | 151, 247 |
| MhlI | GDGCHC | 1 cut(s) | 20 |
| MluCI | AATT | 2 cut(s) | 178, 499 |
| MlyI | GAGTC | 5 cut(s) | 20, 228, 347, 356, 433 |
| MmeI | TCCRAC | 3 cut(s) | 223, 639, 804 |
| Mph1103I | ATGCAT | 1 cut(s) | 94 |
| MroI | TCCGGA | 1 cut(s) | 7 |
| MseI | TTAA | 2 cut(s) | 798, 859 |
| MspA1I | CMGCKG | 2 cut(s) | 98, 584 |
| MspI | CCGG | 2 cut(s) | 8, 672 |
| MspR9I | CCNGG | 1 cut(s) | 673 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 24, 98, 523, 616 |
| NciI | CCSGG | 1 cut(s) | 673 |
| NdeII | GATC | 2 cut(s) | 151, 247 |
| NlaIII | CATG | 4 cut(s) | 277, 485, 717, 727 |
| NlaIV | GGNNCC | 3 cut(s) | 446, 670, 789 |
| NmuCI | GTSAC | 2 cut(s) | 493, 575 |
| NsiI | ATGCAT | 1 cut(s) | 94 |
| PaeR7I | CTCGAG | 1 cut(s) | 421 |
| PciSI | GCTCTTC | 1 cut(s) | 699 |
| PfeI | GAWTC | 5 cut(s) | 71, 278, 536, 549, 848 |
| PkrI | GCNGC | 5 cut(s) | 59, 100, 488, 601, 711 |
| PleI | GAGTC | 5 cut(s) | 19, 228, 347, 356, 432 |
| PpsI | GAGTC | 5 cut(s) | 19, 228, 347, 356, 432 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PspFI | CCCAGC | 1 cut(s) | 513 |
| PspN4I | GGNNCC | 3 cut(s) | 446, 670, 789 |
| PspPI | GGNCC | 2 cut(s) | 59, 641 |
| PspXI | VCTCGAGB | 1 cut(s) | 421 |
| PstI | CTGCAG | 1 cut(s) | 856 |
| PsuI | RGATCY | 2 cut(s) | 151, 247 |
| PvuII | CAGCTG | 1 cut(s) | 584 |
| RsaI | GTAC | 1 cut(s) | 446 |
| RsaNI | GTAC | 1 cut(s) | 445 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SapI | GCTCTTC | 1 cut(s) | 699 |
| SaqAI | TTAA | 2 cut(s) | 798, 859 |
| SatI | GCNGC | 5 cut(s) | 58, 99, 487, 600, 710 |
| Sau3AI | GATC | 2 cut(s) | 151, 247 |
| Sau96I | GGNCC | 2 cut(s) | 59, 641 |
| SchI | GAGTC | 5 cut(s) | 20, 228, 347, 356, 433 |
| ScrFI | CCNGG | 1 cut(s) | 673 |
| SduI | GDGCHC | 1 cut(s) | 20 |
| SfaNI | GCATC | 3 cut(s) | 101, 110, 227 |
| SfcI | CTRYAG | 1 cut(s) | 852 |
| Sfr274I | CTCGAG | 1 cut(s) | 421 |
| SlaI | CTCGAG | 1 cut(s) | 421 |
| SmlI | CTYRAG | 2 cut(s) | 421, 589 |
| SmoI | CTYRAG | 2 cut(s) | 421, 589 |
| Sse9I | AATT | 2 cut(s) | 178, 499 |
| SsiI | CCGC | 7 cut(s) | 27, 33, 57, 96, 142, 610, 761 |
| SspI | AATATT | 1 cut(s) | 335 |
| SspMI | CTAG | 2 cut(s) | 222, 564 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| StyD4I | CCNGG | 1 cut(s) | 671 |
| StyI | CCWWGG | 1 cut(s) | 311 |
| TaaI | ACNGT | 4 cut(s) | 241, 493, 648, 685 |
| TaqI | TCGA | 4 cut(s) | 14, 174, 367, 422 |
| TasI | AATT | 2 cut(s) | 178, 499 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 5 cut(s) | 71, 278, 536, 549, 848 |
| Tru1I | TTAA | 2 cut(s) | 798, 859 |
| Tru9I | TTAA | 2 cut(s) | 798, 859 |
| TscAI | CASTG | 1 cut(s) | 496 |
| TseFI | GTSAC | 2 cut(s) | 493, 575 |
| TseI | GCWGC | 4 cut(s) | 98, 486, 599, 709 |
| Tsp45I | GTSAC | 2 cut(s) | 493, 575 |
| TspDTI | ATGAA | 3 cut(s) | 66, 99, 740 |
| TspGWI | ACGGA | 1 cut(s) | 800 |
| TspRI | CASTG | 1 cut(s) | 496 |
| XhoI | CTCGAG | 1 cut(s) | 421 |
| XspI | CTAG | 2 cut(s) | 222, 564 |
| Zsp2I | ATGCAT | 1 cut(s) | 94 |