BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 1 cut(s) | 405 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 422 |
| AciI | CCGC | 2 cut(s) | 66, 72 |
| AclWI | GGATC | 2 cut(s) | 113, 209 |
| AcuI | CTGAAG | 1 cut(s) | 144 |
| AdeI | CACNNNGTG | 1 cut(s) | 548 |
| AfaI | GTAC | 1 cut(s) | 407 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 422, 690 |
| AflII | CTTAAG | 1 cut(s) | 571 |
| AflIII | ACRYGT | 1 cut(s) | 351 |
| AgsI | TTSAA | 5 cut(s) | 196, 435, 487, 680, 781 |
| AhlI | ACTAGT | 1 cut(s) | 446 |
| AluBI | AGCT | 3 cut(s) | 18, 468, 566 |
| AluI | AGCT | 3 cut(s) | 18, 468, 566 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 377 |
| Alw26I | GTCTC | 1 cut(s) | 397 |
| AlwI | GGATC | 2 cut(s) | 113, 209 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 773 |
| AoxI | GGCC | 1 cut(s) | 692 |
| ApeKI | GCWGC | 3 cut(s) | 468, 581, 839 |
| Asp718I | GGTACC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 473 |
| AspS9I | GGNCC | 1 cut(s) | 623 |
| AsuHPI | GGTGA | 4 cut(s) | 45, 291, 534, 755 |
| AvaII | GGWCC | 1 cut(s) | 623 |
| BanI | GGYRCC | 1 cut(s) | 405 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 377 |
| BbvCI | CCTCAGC | 1 cut(s) | 170 |
| BbvI | GCAGC | 3 cut(s) | 455, 568, 826 |
| BccI | CCATC | 3 cut(s) | 64, 544, 637 |
| BcoDI | GTCTC | 1 cut(s) | 397 |
| BcuI | ACTAGT | 1 cut(s) | 446 |
| BfaI | CTAG | 5 cut(s) | 189, 384, 447, 546, 672 |
| BfmI | CTRYAG | 1 cut(s) | 840 |
| BfrI | CTTAAG | 1 cut(s) | 571 |
| BisI | GCNGC | 3 cut(s) | 469, 582, 840 |
| BlsI | GCNGC | 3 cut(s) | 470, 583, 841 |
| Bme18I | GGWCC | 1 cut(s) | 623 |
| BmgT120I | GGNCC | 1 cut(s) | 623 |
| BmiI | GGNNCC | 2 cut(s) | 407, 625 |
| BmrI | ACTGGG | 1 cut(s) | 432 |
| BmsI | GCATC | 9 cut(s) | 77, 83, 89, 95, 101, 107, 194, 273, 463 |
| BmuI | ACTGGG | 1 cut(s) | 432 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 204, 236 |
| Bpu10I | CCTNAGC | 1 cut(s) | 170 |
| BsaBI | GATNNNNATC | 1 cut(s) | 535 |
| BsaJI | CCNNGG | 1 cut(s) | 684 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 341, 371 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 422, 690 |
| Bse1I | ACTGG | 2 cut(s) | 389, 427 |
| Bse8I | GATNNNNATC | 1 cut(s) | 535 |
| BseDI | CCNNGG | 1 cut(s) | 684 |
| BseGI | GGATG | 5 cut(s) | 68, 283, 454, 807, 820 |
| BseJI | GATNNNNATC | 1 cut(s) | 535 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 422, 690 |
| BseMII | CTCAG | 6 cut(s) | 33, 184, 330, 360, 576, 780 |
| BseNI | ACTGG | 2 cut(s) | 389, 427 |
| BseRI | GAGGAG | 2 cut(s) | 349, 701 |
| BseXI | GCAGC | 3 cut(s) | 455, 568, 826 |
| BsgI | GTGCAG | 2 cut(s) | 567, 620 |
| BshFI | GGCC | 1 cut(s) | 694 |
| BshNI | GGYRCC | 1 cut(s) | 405 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 377 |
| BslFI | GGGAC | 3 cut(s) | 484, 609, 841 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 422, 690 |
| BsmAI | GTCTC | 1 cut(s) | 397 |
| BsmFI | GGGAC | 3 cut(s) | 484, 609, 841 |
| BsnI | GGCC | 1 cut(s) | 694 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 377 |
| Bsp143I | GATC | 3 cut(s) | 118, 177, 214 |
| BspACI | CCGC | 2 cut(s) | 66, 72 |
| BspANI | GGCC | 1 cut(s) | 694 |
| BspCNI | CTCAG | 6 cut(s) | 32, 183, 329, 361, 575, 779 |
| BspLI | GGNNCC | 2 cut(s) | 407, 625 |
| BspMAI | CTGCAG | 1 cut(s) | 844 |
| BspPI | GGATC | 2 cut(s) | 113, 209 |
| BspT107I | GGYRCC | 1 cut(s) | 405 |
| BspTI | CTTAAG | 1 cut(s) | 571 |
| BsrI | ACTGG | 2 cut(s) | 389, 427 |
| BssECI | CCNNGG | 1 cut(s) | 684 |
| BssMI | GATC | 3 cut(s) | 118, 177, 214 |
| Bst4CI | ACNGT | 3 cut(s) | 208, 498, 594 |
| BstAFI | CTTAAG | 1 cut(s) | 571 |
| BstDEI | CTNAG | 7 cut(s) | 19, 170, 289, 316, 369, 562, 766 |
| BstF5I | GGATG | 5 cut(s) | 68, 283, 454, 807, 820 |
| BstHHI | GCGC | 1 cut(s) | 473 |
| BstKTI | GATC | 3 cut(s) | 121, 180, 217 |
| BstMAI | GTCTC | 1 cut(s) | 397 |
| BstMBI | GATC | 3 cut(s) | 118, 177, 214 |
| BstSFI | CTRYAG | 1 cut(s) | 840 |
| BstV1I | GCAGC | 3 cut(s) | 455, 568, 826 |
| BstX2I | RGATCY | 2 cut(s) | 118, 214 |
| BstYI | RGATCY | 2 cut(s) | 118, 214 |
| BsuRI | GGCC | 1 cut(s) | 694 |
| BtsCI | GGATG | 5 cut(s) | 68, 283, 454, 807, 820 |
| BtsIMutI | CAGTG | 1 cut(s) | 603 |
| CaiI | CAGNNNCTG | 1 cut(s) | 773 |
| CfoI | GCGC | 1 cut(s) | 473 |
| Cfr13I | GGNCC | 1 cut(s) | 623 |
| Csp6I | GTAC | 1 cut(s) | 406 |
| CviAII | CATG | 5 cut(s) | 181, 235, 262, 696, 795 |
| CviJI | RGCY | 8 cut(s) | 18, 468, 513, 566, 581, 683, 694, 772 |
| CviKI_1 | RGCY | 8 cut(s) | 18, 468, 513, 566, 581, 683, 694, 772 |
| CviQI | GTAC | 1 cut(s) | 406 |
| DdeI | CTNAG | 7 cut(s) | 19, 170, 289, 316, 369, 562, 766 |
| DpnI | GATC | 3 cut(s) | 120, 179, 216 |
| DpnII | GATC | 3 cut(s) | 118, 177, 214 |
| DraIII | CACNNNGTG | 1 cut(s) | 548 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco47I | GGWCC | 1 cut(s) | 623 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 144 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| FaeI | CATG | 5 cut(s) | 184, 238, 265, 699, 798 |
| FaqI | GGGAC | 3 cut(s) | 484, 609, 841 |
| FatI | CATG | 5 cut(s) | 180, 234, 261, 695, 794 |
| FauI | CCCGC | 1 cut(s) | 73 |
| Fnu4HI | GCNGC | 3 cut(s) | 469, 582, 840 |
| FokI | GGATG | 5 cut(s) | 55, 290, 441, 814, 827 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 3 cut(s) | 469, 582, 840 |
| FspBI | CTAG | 5 cut(s) | 189, 384, 447, 546, 672 |
| GlaI | GCGC | 1 cut(s) | 472 |
| GluI | GCNGC | 3 cut(s) | 469, 582, 840 |
| HaeIII | GGCC | 1 cut(s) | 694 |
| HhaI | GCGC | 1 cut(s) | 473 |
| Hin1II | CATG | 5 cut(s) | 184, 238, 265, 699, 798 |
| Hin6I | GCGC | 1 cut(s) | 471 |
| HinP1I | GCGC | 1 cut(s) | 471 |
| HincII | GTYRAC | 2 cut(s) | 506, 642 |
| HindII | GTYRAC | 2 cut(s) | 506, 642 |
| HinfI | GANTC | 7 cut(s) | 239, 314, 323, 518, 531, 662, 829 |
| HphI | GGTGA | 4 cut(s) | 45, 291, 534, 755 |
| Hpy166II | GTNNAC | 3 cut(s) | 136, 506, 642 |
| Hpy188I | TCNGA | 6 cut(s) | 256, 310, 319, 517, 523, 769 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 102, 122 |
| Hpy8I | GTNNAC | 3 cut(s) | 136, 506, 642 |
| HpyAV | CCTTC | 3 cut(s) | 390, 441, 468 |
| HpyCH4III | ACNGT | 3 cut(s) | 208, 498, 594 |
| HpyCH4IV | ACGT | 1 cut(s) | 353 |
| HpyF3I | CTNAG | 7 cut(s) | 19, 170, 289, 316, 369, 562, 766 |
| HpySE526I | ACGT | 1 cut(s) | 353 |
| Hsp92II | CATG | 5 cut(s) | 184, 238, 265, 699, 798 |
| HspAI | GCGC | 1 cut(s) | 471 |
| KpnI | GGTACC | 1 cut(s) | 409 |
| Kzo9I | GATC | 3 cut(s) | 118, 177, 214 |
| LmnI | GCTCC | 1 cut(s) | 704 |
| Lsp1109I | GCAGC | 3 cut(s) | 455, 568, 826 |
| LweI | GCATC | 9 cut(s) | 77, 83, 89, 95, 101, 107, 194, 273, 463 |
| MaeI | CTAG | 5 cut(s) | 189, 384, 447, 546, 672 |
| MaeII | ACGT | 1 cut(s) | 353 |
| MaeIII | GTNAC | 2 cut(s) | 164, 548 |
| MalI | GATC | 3 cut(s) | 120, 179, 216 |
| MboI | GATC | 3 cut(s) | 118, 177, 214 |
| MboII | GAAGA | 4 cut(s) | 30, 36, 137, 744 |
| MflI | RGATCY | 2 cut(s) | 118, 214 |
| MhlI | GDGCHC | 2 cut(s) | 20, 377 |
| MluCI | AATT | 2 cut(s) | 145, 481 |
| MlyI | GAGTC | 4 cut(s) | 308, 317, 671, 823 |
| MmeI | TCCRAC | 1 cut(s) | 190 |
| MseI | TTAA | 2 cut(s) | 572, 847 |
| MspA1I | CMGCKG | 1 cut(s) | 566 |
| MspCI | CTTAAG | 1 cut(s) | 571 |
| NdeII | GATC | 3 cut(s) | 118, 177, 214 |
| NlaIII | CATG | 5 cut(s) | 184, 238, 265, 699, 798 |
| NlaIV | GGNNCC | 2 cut(s) | 407, 625 |
| NmeAIII | GCCGAG | 1 cut(s) | 709 |
| NmuCI | GTSAC | 1 cut(s) | 548 |
| PfeI | GAWTC | 3 cut(s) | 239, 518, 531 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 422 |
| PkrI | GCNGC | 3 cut(s) | 470, 583, 841 |
| PleI | GAGTC | 4 cut(s) | 308, 317, 670, 823 |
| PpsI | GAGTC | 4 cut(s) | 308, 317, 670, 823 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PspN4I | GGNNCC | 2 cut(s) | 407, 625 |
| PspPI | GGNCC | 1 cut(s) | 623 |
| PstI | CTGCAG | 1 cut(s) | 844 |
| PstNI | CAGNNNCTG | 1 cut(s) | 773 |
| PsuI | RGATCY | 2 cut(s) | 118, 214 |
| PvuII | CAGCTG | 1 cut(s) | 566 |
| RsaI | GTAC | 1 cut(s) | 407 |
| RsaNI | GTAC | 1 cut(s) | 406 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 2 cut(s) | 572, 847 |
| SatI | GCNGC | 3 cut(s) | 469, 582, 840 |
| Sau3AI | GATC | 3 cut(s) | 118, 177, 214 |
| Sau96I | GGNCC | 1 cut(s) | 623 |
| SchI | GAGTC | 4 cut(s) | 308, 317, 671, 823 |
| SduI | GDGCHC | 2 cut(s) | 20, 377 |
| SfaNI | GCATC | 9 cut(s) | 77, 83, 89, 95, 101, 107, 194, 273, 463 |
| SfcI | CTRYAG | 1 cut(s) | 840 |
| SinI | GGWCC | 1 cut(s) | 623 |
| SmlI | CTYRAG | 1 cut(s) | 571 |
| SmoI | CTYRAG | 1 cut(s) | 571 |
| SpeI | ACTAGT | 1 cut(s) | 446 |
| Sse9I | AATT | 2 cut(s) | 145, 481 |
| SsiI | CCGC | 2 cut(s) | 66, 72 |
| SspMI | CTAG | 5 cut(s) | 189, 384, 447, 546, 672 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| TaaI | ACNGT | 3 cut(s) | 208, 498, 594 |
| TaiI | ACGT | 1 cut(s) | 356 |
| TaqI | TCGA | 3 cut(s) | 59, 141, 443 |
| TasI | AATT | 2 cut(s) | 145, 481 |
| TfiI | GAWTC | 3 cut(s) | 239, 518, 531 |
| Tru1I | TTAA | 2 cut(s) | 572, 847 |
| Tru9I | TTAA | 2 cut(s) | 572, 847 |
| TscAI | CASTG | 1 cut(s) | 603 |
| TseFI | GTSAC | 1 cut(s) | 548 |
| TseI | GCWGC | 3 cut(s) | 468, 581, 839 |
| Tsp45I | GTSAC | 1 cut(s) | 548 |
| TspDTI | ATGAA | 5 cut(s) | 24, 30, 722, 738, 821 |
| TspGWI | ACGGA | 1 cut(s) | 387 |
| TspRI | CASTG | 1 cut(s) | 603 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 422 |
| Vha464I | CTTAAG | 1 cut(s) | 571 |
| VpaK11BI | GGWCC | 1 cut(s) | 623 |
| XspI | CTAG | 5 cut(s) | 189, 384, 447, 546, 672 |