BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 387 |
| AccB1I | GGYRCC | 1 cut(s) | 387 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 404 |
| AccI | GTMKAC | 1 cut(s) | 117 |
| AciI | CCGC | 1 cut(s) | 78 |
| AclWI | GGATC | 2 cut(s) | 95, 191 |
| AcuI | CTGAAG | 2 cut(s) | 21, 126 |
| AdeI | CACNNNGTG | 1 cut(s) | 530 |
| AfaI | GTAC | 2 cut(s) | 389, 424 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 83, 404 |
| AflII | CTTAAG | 1 cut(s) | 553 |
| AgsI | TTSAA | 4 cut(s) | 178, 417, 469, 662 |
| AhlI | ACTAGT | 1 cut(s) | 428 |
| AluBI | AGCT | 4 cut(s) | 18, 35, 450, 548 |
| AluI | AGCT | 4 cut(s) | 18, 35, 450, 548 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 457 |
| Alw26I | GTCTC | 3 cut(s) | 233, 379, 667 |
| AlwI | GGATC | 2 cut(s) | 95, 191 |
| Ama87I | CYCGRG | 1 cut(s) | 307 |
| ApeKI | GCWGC | 3 cut(s) | 32, 563, 818 |
| Asp718I | GGTACC | 1 cut(s) | 387 |
| AspS9I | GGNCC | 1 cut(s) | 605 |
| AsuHPI | GGTGA | 5 cut(s) | 45, 273, 516, 677, 737 |
| AvaI | CYCGRG | 1 cut(s) | 307 |
| AvaII | GGWCC | 1 cut(s) | 605 |
| BanI | GGYRCC | 1 cut(s) | 387 |
| BanII | GRGCYC | 2 cut(s) | 20, 756 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 457 |
| BbvI | GCAGC | 3 cut(s) | 44, 550, 805 |
| BccI | CCATC | 3 cut(s) | 64, 526, 619 |
| BcoDI | GTCTC | 3 cut(s) | 233, 379, 667 |
| BcuI | ACTAGT | 1 cut(s) | 428 |
| BfaI | CTAG | 6 cut(s) | 171, 255, 366, 429, 528, 654 |
| BfmI | CTRYAG | 1 cut(s) | 819 |
| BfrI | CTTAAG | 1 cut(s) | 553 |
| BisI | GCNGC | 3 cut(s) | 33, 564, 819 |
| BlpI | GCTNAGC | 1 cut(s) | 19 |
| BlsI | GCNGC | 3 cut(s) | 34, 565, 820 |
| Bme18I | GGWCC | 1 cut(s) | 605 |
| BmeT110I | CYCGRG | 1 cut(s) | 307 |
| BmgT120I | GGNCC | 1 cut(s) | 605 |
| BmiI | GGNNCC | 1 cut(s) | 389 |
| BmrI | ACTGGG | 1 cut(s) | 414 |
| BmsI | GCATC | 4 cut(s) | 89, 176, 255, 445 |
| BmuI | ACTGGG | 1 cut(s) | 414 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 34, 186, 218 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 19 |
| BsaBI | GATNNNNATC | 1 cut(s) | 517 |
| BsaI | GGTCTC | 2 cut(s) | 233, 667 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 323, 353 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 83, 404 |
| Bse1I | ACTGG | 2 cut(s) | 371, 409 |
| Bse8I | GATNNNNATC | 1 cut(s) | 517 |
| BseGI | GGATG | 5 cut(s) | 71, 265, 436, 789, 802 |
| BseJI | GATNNNNATC | 1 cut(s) | 517 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 83, 404 |
| BseMII | CTCAG | 7 cut(s) | 33, 166, 228, 312, 491, 558, 762 |
| BseNI | ACTGG | 2 cut(s) | 371, 409 |
| BseRI | GAGGAG | 3 cut(s) | 42, 331, 683 |
| BseXI | GCAGC | 3 cut(s) | 44, 550, 805 |
| BsgI | GTGCAG | 2 cut(s) | 549, 602 |
| BshNI | GGYRCC | 1 cut(s) | 387 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 457 |
| BsiHKCI | CYCGRG | 1 cut(s) | 307 |
| BslFI | GGGAC | 1 cut(s) | 466 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 83, 404 |
| BsmAI | GTCTC | 3 cut(s) | 233, 379, 667 |
| BsmFI | GGGAC | 1 cut(s) | 466 |
| Bso31I | GGTCTC | 2 cut(s) | 233, 667 |
| BsoBI | CYCGRG | 1 cut(s) | 307 |
| Bsp1286I | GDGCHC | 3 cut(s) | 20, 457, 756 |
| Bsp143I | GATC | 3 cut(s) | 100, 159, 196 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 19 |
| BspACI | CCGC | 1 cut(s) | 78 |
| BspCNI | CTCAG | 7 cut(s) | 32, 165, 229, 311, 490, 557, 761 |
| BspLI | GGNNCC | 1 cut(s) | 389 |
| BspMAI | CTGCAG | 1 cut(s) | 823 |
| BspPI | GGATC | 2 cut(s) | 95, 191 |
| BspT107I | GGYRCC | 1 cut(s) | 387 |
| BspTI | CTTAAG | 1 cut(s) | 553 |
| BspTNI | GGTCTC | 2 cut(s) | 233, 667 |
| BsrI | ACTGG | 2 cut(s) | 371, 409 |
| BssMI | GATC | 3 cut(s) | 100, 159, 196 |
| Bst4CI | ACNGT | 2 cut(s) | 190, 576 |
| BstAFI | CTTAAG | 1 cut(s) | 553 |
| BstDEI | CTNAG | 8 cut(s) | 19, 152, 237, 271, 298, 477, 544, 748 |
| BstF5I | GGATG | 5 cut(s) | 71, 265, 436, 789, 802 |
| BstKTI | GATC | 3 cut(s) | 103, 162, 199 |
| BstMAI | GTCTC | 3 cut(s) | 233, 379, 667 |
| BstMBI | GATC | 3 cut(s) | 100, 159, 196 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 29 |
| BstSFI | CTRYAG | 1 cut(s) | 819 |
| BstV1I | GCAGC | 3 cut(s) | 44, 550, 805 |
| BstX2I | RGATCY | 2 cut(s) | 100, 196 |
| BstYI | RGATCY | 2 cut(s) | 100, 196 |
| BtsCI | GGATG | 5 cut(s) | 71, 265, 436, 789, 802 |
| BtsIMutI | CAGTG | 1 cut(s) | 585 |
| Cfr13I | GGNCC | 1 cut(s) | 605 |
| Csp6I | GTAC | 2 cut(s) | 388, 423 |
| CviAII | CATG | 5 cut(s) | 163, 217, 244, 678, 777 |
| CviJI | RGCY | 8 cut(s) | 13, 18, 35, 450, 495, 548, 563, 754 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 18, 35, 450, 495, 548, 563, 754 |
| CviQI | GTAC | 2 cut(s) | 388, 423 |
| DdeI | CTNAG | 8 cut(s) | 19, 152, 237, 271, 298, 477, 544, 748 |
| DpnI | GATC | 3 cut(s) | 102, 161, 198 |
| DpnII | GATC | 3 cut(s) | 100, 159, 196 |
| DraIII | CACNNNGTG | 1 cut(s) | 530 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 2 cut(s) | 20, 756 |
| Eco31I | GGTCTC | 2 cut(s) | 233, 667 |
| Eco32I | GATATC | 1 cut(s) | 651 |
| Eco47I | GGWCC | 1 cut(s) | 605 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 2 cut(s) | 21, 126 |
| Eco88I | CYCGRG | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoRV | GATATC | 1 cut(s) | 651 |
| EcoT38I | GRGCYC | 2 cut(s) | 20, 756 |
| FaeI | CATG | 5 cut(s) | 166, 220, 247, 681, 780 |
| FaqI | GGGAC | 1 cut(s) | 466 |
| FatI | CATG | 5 cut(s) | 162, 216, 243, 677, 776 |
| FauI | CCCGC | 1 cut(s) | 85 |
| FblI | GTMKAC | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 3 cut(s) | 33, 564, 819 |
| FokI | GGATG | 5 cut(s) | 58, 272, 423, 796, 809 |
| FriOI | GRGCYC | 2 cut(s) | 20, 756 |
| Fsp4HI | GCNGC | 3 cut(s) | 33, 564, 819 |
| FspBI | CTAG | 6 cut(s) | 171, 255, 366, 429, 528, 654 |
| GluI | GCNGC | 3 cut(s) | 33, 564, 819 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| Hin1II | CATG | 5 cut(s) | 166, 220, 247, 681, 780 |
| HincII | GTYRAC | 2 cut(s) | 488, 624 |
| HindII | GTYRAC | 2 cut(s) | 488, 624 |
| HinfI | GANTC | 7 cut(s) | 221, 296, 305, 500, 513, 644, 808 |
| HphI | GGTGA | 5 cut(s) | 45, 273, 516, 677, 737 |
| Hpy166II | GTNNAC | 4 cut(s) | 118, 488, 608, 624 |
| Hpy188I | TCNGA | 7 cut(s) | 40, 238, 292, 301, 499, 505, 751 |
| Hpy188III | TCNNGA | 4 cut(s) | 8, 84, 104, 309 |
| Hpy8I | GTNNAC | 4 cut(s) | 118, 488, 608, 624 |
| HpyAV | CCTTC | 4 cut(s) | 372, 423, 656, 796 |
| HpyCH4III | ACNGT | 2 cut(s) | 190, 576 |
| HpyCH4V | TGCA | 4 cut(s) | 566, 583, 780, 821 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 29 |
| HpyF3I | CTNAG | 8 cut(s) | 19, 152, 237, 271, 298, 477, 544, 748 |
| Hsp92II | CATG | 5 cut(s) | 166, 220, 247, 681, 780 |
| KpnI | GGTACC | 1 cut(s) | 391 |
| Kzo9I | GATC | 3 cut(s) | 100, 159, 196 |
| LmnI | GCTCC | 2 cut(s) | 29, 686 |
| Lsp1109I | GCAGC | 3 cut(s) | 44, 550, 805 |
| LweI | GCATC | 4 cut(s) | 89, 176, 255, 445 |
| MaeI | CTAG | 6 cut(s) | 171, 255, 366, 429, 528, 654 |
| MaeIII | GTNAC | 1 cut(s) | 530 |
| MalI | GATC | 3 cut(s) | 102, 161, 198 |
| MboI | GATC | 3 cut(s) | 100, 159, 196 |
| MboII | GAAGA | 3 cut(s) | 42, 119, 726 |
| MflI | RGATCY | 2 cut(s) | 100, 196 |
| MhlI | GDGCHC | 3 cut(s) | 20, 457, 756 |
| MluCI | AATT | 2 cut(s) | 127, 463 |
| MlyI | GAGTC | 3 cut(s) | 290, 299, 653 |
| MmeI | TCCRAC | 1 cut(s) | 172 |
| MseI | TTAA | 3 cut(s) | 554, 762, 826 |
| MslI | CAYNNNNRTG | 1 cut(s) | 450 |
| MspA1I | CMGCKG | 1 cut(s) | 548 |
| MspCI | CTTAAG | 1 cut(s) | 553 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 29 |
| NdeII | GATC | 3 cut(s) | 100, 159, 196 |
| NlaIII | CATG | 5 cut(s) | 166, 220, 247, 681, 780 |
| NlaIV | GGNNCC | 1 cut(s) | 389 |
| NmeAIII | GCCGAG | 1 cut(s) | 39 |
| NmuCI | GTSAC | 1 cut(s) | 530 |
| PaeR7I | CTCGAG | 1 cut(s) | 307 |
| PfeI | GAWTC | 4 cut(s) | 221, 500, 513, 808 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 404 |
| PkrI | GCNGC | 3 cut(s) | 34, 565, 820 |
| PleI | GAGTC | 3 cut(s) | 290, 299, 652 |
| PpsI | GAGTC | 3 cut(s) | 290, 299, 652 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PspN4I | GGNNCC | 1 cut(s) | 389 |
| PspPI | GGNCC | 1 cut(s) | 605 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 415, 447 |
| PstI | CTGCAG | 1 cut(s) | 823 |
| PsuI | RGATCY | 2 cut(s) | 100, 196 |
| PvuII | CAGCTG | 1 cut(s) | 548 |
| RsaI | GTAC | 2 cut(s) | 389, 424 |
| RsaNI | GTAC | 2 cut(s) | 388, 423 |
| RseI | CAYNNNNRTG | 1 cut(s) | 450 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 3 cut(s) | 554, 762, 826 |
| SatI | GCNGC | 3 cut(s) | 33, 564, 819 |
| Sau3AI | GATC | 3 cut(s) | 100, 159, 196 |
| Sau96I | GGNCC | 1 cut(s) | 605 |
| SchI | GAGTC | 3 cut(s) | 290, 299, 653 |
| SduI | GDGCHC | 3 cut(s) | 20, 457, 756 |
| SfaNI | GCATC | 4 cut(s) | 89, 176, 255, 445 |
| SfcI | CTRYAG | 1 cut(s) | 819 |
| Sfr274I | CTCGAG | 1 cut(s) | 307 |
| SinI | GGWCC | 1 cut(s) | 605 |
| SlaI | CTCGAG | 1 cut(s) | 307 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 450 |
| SmlI | CTYRAG | 2 cut(s) | 307, 553 |
| SmoI | CTYRAG | 2 cut(s) | 307, 553 |
| SpeI | ACTAGT | 1 cut(s) | 428 |
| Sse9I | AATT | 2 cut(s) | 127, 463 |
| SsiI | CCGC | 1 cut(s) | 78 |
| SspI | AATATT | 1 cut(s) | 278 |
| SspMI | CTAG | 6 cut(s) | 171, 255, 366, 429, 528, 654 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| TaaI | ACNGT | 2 cut(s) | 190, 576 |
| TaqI | TCGA | 4 cut(s) | 65, 123, 308, 647 |
| TasI | AATT | 2 cut(s) | 127, 463 |
| TfiI | GAWTC | 4 cut(s) | 221, 500, 513, 808 |
| Tru1I | TTAA | 3 cut(s) | 554, 762, 826 |
| Tru9I | TTAA | 3 cut(s) | 554, 762, 826 |
| TscAI | CASTG | 1 cut(s) | 585 |
| TseFI | GTSAC | 1 cut(s) | 530 |
| TseI | GCWGC | 3 cut(s) | 32, 563, 818 |
| Tsp45I | GTSAC | 1 cut(s) | 530 |
| TspDTI | ATGAA | 4 cut(s) | 36, 704, 720, 803 |
| TspRI | CASTG | 1 cut(s) | 585 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 404 |
| Vha464I | CTTAAG | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 1 cut(s) | 605 |
| XhoI | CTCGAG | 1 cut(s) | 307 |
| XmiI | GTMKAC | 1 cut(s) | 117 |
| XspI | CTAG | 6 cut(s) | 171, 255, 366, 429, 528, 654 |