BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 420 |
| AccB1I | GGYRCC | 1 cut(s) | 420 |
| AciI | CCGC | 1 cut(s) | 105 |
| AclWI | GGATC | 2 cut(s) | 128, 224 |
| AcuI | CTGAAG | 1 cut(s) | 159 |
| AdeI | CACNNNGTG | 1 cut(s) | 563 |
| AfaI | GTAC | 1 cut(s) | 422 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 437 |
| AflII | CTTAAG | 1 cut(s) | 586 |
| AflIII | ACRYGT | 2 cut(s) | 366, 452 |
| AgsI | TTSAA | 5 cut(s) | 211, 450, 502, 683, 784 |
| AhlI | ACTAGT | 1 cut(s) | 461 |
| AluBI | AGCT | 3 cut(s) | 18, 483, 581 |
| AluI | AGCT | 3 cut(s) | 18, 483, 581 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 392 |
| Alw26I | GTCTC | 1 cut(s) | 412 |
| AlwI | GGATC | 2 cut(s) | 128, 224 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 776 |
| AoxI | GGCC | 1 cut(s) | 695 |
| ApeKI | GCWGC | 3 cut(s) | 483, 596, 839 |
| Asp718I | GGTACC | 1 cut(s) | 420 |
| AspLEI | GCGC | 1 cut(s) | 488 |
| AspS9I | GGNCC | 1 cut(s) | 638 |
| AsuC2I | CCSGG | 1 cut(s) | 439 |
| AsuHPI | GGTGA | 4 cut(s) | 84, 306, 549, 758 |
| AvaII | GGWCC | 1 cut(s) | 638 |
| BanI | GGYRCC | 1 cut(s) | 420 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 392 |
| BbvI | GCAGC | 3 cut(s) | 470, 583, 826 |
| BccI | CCATC | 3 cut(s) | 103, 559, 652 |
| BcnI | CCSGG | 1 cut(s) | 439 |
| BcoDI | GTCTC | 1 cut(s) | 412 |
| BcuI | ACTAGT | 1 cut(s) | 461 |
| BfaI | CTAG | 4 cut(s) | 204, 399, 462, 561 |
| BfmI | CTRYAG | 1 cut(s) | 840 |
| BfrI | CTTAAG | 1 cut(s) | 586 |
| BisI | GCNGC | 3 cut(s) | 484, 597, 840 |
| BlsI | GCNGC | 3 cut(s) | 485, 598, 841 |
| Bme1390I | CCNGG | 1 cut(s) | 439 |
| Bme18I | GGWCC | 1 cut(s) | 638 |
| BmgT120I | GGNCC | 1 cut(s) | 638 |
| BmiI | GGNNCC | 2 cut(s) | 422, 640 |
| BmrFI | CCNGG | 1 cut(s) | 439 |
| BmsI | GCATC | 4 cut(s) | 116, 122, 209, 478 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 219, 251 |
| BpuMI | CCSGG | 1 cut(s) | 439 |
| BsaBI | GATNNNNATC | 1 cut(s) | 550 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 356, 386 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 437 |
| Bse1I | ACTGG | 1 cut(s) | 404 |
| Bse8I | GATNNNNATC | 1 cut(s) | 550 |
| BseGI | GGATG | 4 cut(s) | 298, 469, 810, 823 |
| BseJI | GATNNNNATC | 1 cut(s) | 550 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 437 |
| BseMII | CTCAG | 5 cut(s) | 33, 199, 345, 591, 783 |
| BseNI | ACTGG | 1 cut(s) | 404 |
| BseRI | GAGGAG | 3 cut(s) | 139, 364, 704 |
| BseXI | GCAGC | 3 cut(s) | 470, 583, 826 |
| BsgI | GTGCAG | 2 cut(s) | 582, 635 |
| BshFI | GGCC | 1 cut(s) | 697 |
| BshNI | GGYRCC | 1 cut(s) | 420 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 392 |
| BsiSI | CCGG | 1 cut(s) | 438 |
| BslFI | GGGAC | 3 cut(s) | 499, 624, 841 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 437 |
| BsmAI | GTCTC | 1 cut(s) | 412 |
| BsmFI | GGGAC | 3 cut(s) | 499, 624, 841 |
| BsnI | GGCC | 1 cut(s) | 697 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 392 |
| Bsp143I | GATC | 3 cut(s) | 133, 192, 229 |
| BspACI | CCGC | 1 cut(s) | 105 |
| BspANI | GGCC | 1 cut(s) | 697 |
| BspCNI | CTCAG | 5 cut(s) | 32, 198, 344, 590, 782 |
| BspLI | GGNNCC | 2 cut(s) | 422, 640 |
| BspMAI | CTGCAG | 1 cut(s) | 844 |
| BspPI | GGATC | 2 cut(s) | 128, 224 |
| BspT107I | GGYRCC | 1 cut(s) | 420 |
| BspTI | CTTAAG | 1 cut(s) | 586 |
| BsrI | ACTGG | 1 cut(s) | 404 |
| BssMI | GATC | 3 cut(s) | 133, 192, 229 |
| Bst4CI | ACNGT | 3 cut(s) | 223, 513, 609 |
| BstAFI | CTTAAG | 1 cut(s) | 586 |
| BstDEI | CTNAG | 5 cut(s) | 19, 185, 331, 577, 769 |
| BstF5I | GGATG | 4 cut(s) | 298, 469, 810, 823 |
| BstHHI | GCGC | 1 cut(s) | 488 |
| BstKTI | GATC | 3 cut(s) | 136, 195, 232 |
| BstMAI | GTCTC | 1 cut(s) | 412 |
| BstMBI | GATC | 3 cut(s) | 133, 192, 229 |
| BstSCI | CCNGG | 1 cut(s) | 437 |
| BstSFI | CTRYAG | 1 cut(s) | 840 |
| BstV1I | GCAGC | 3 cut(s) | 470, 583, 826 |
| BstX2I | RGATCY | 2 cut(s) | 133, 229 |
| BstYI | RGATCY | 2 cut(s) | 133, 229 |
| BsuRI | GGCC | 1 cut(s) | 697 |
| BtsCI | GGATG | 4 cut(s) | 298, 469, 810, 823 |
| BtsIMutI | CAGTG | 1 cut(s) | 618 |
| CaiI | CAGNNNCTG | 1 cut(s) | 776 |
| CfoI | GCGC | 1 cut(s) | 488 |
| Cfr13I | GGNCC | 1 cut(s) | 638 |
| Csp6I | GTAC | 1 cut(s) | 421 |
| CviAII | CATG | 6 cut(s) | 196, 250, 277, 383, 699, 798 |
| CviJI | RGCY | 7 cut(s) | 18, 483, 528, 581, 596, 697, 775 |
| CviKI_1 | RGCY | 7 cut(s) | 18, 483, 528, 581, 596, 697, 775 |
| CviQI | GTAC | 1 cut(s) | 421 |
| DdeI | CTNAG | 5 cut(s) | 19, 185, 331, 577, 769 |
| DpnI | GATC | 3 cut(s) | 135, 194, 231 |
| DpnII | GATC | 3 cut(s) | 133, 192, 229 |
| DraIII | CACNNNGTG | 1 cut(s) | 563 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco47I | GGWCC | 1 cut(s) | 638 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 159 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| FaeI | CATG | 6 cut(s) | 199, 253, 280, 386, 702, 801 |
| FaqI | GGGAC | 3 cut(s) | 499, 624, 841 |
| FatI | CATG | 6 cut(s) | 195, 249, 276, 382, 698, 797 |
| FauI | CCCGC | 1 cut(s) | 112 |
| Fnu4HI | GCNGC | 3 cut(s) | 484, 597, 840 |
| FokI | GGATG | 4 cut(s) | 305, 456, 817, 830 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 3 cut(s) | 484, 597, 840 |
| FspBI | CTAG | 4 cut(s) | 204, 399, 462, 561 |
| GlaI | GCGC | 1 cut(s) | 487 |
| GluI | GCNGC | 3 cut(s) | 484, 597, 840 |
| HaeIII | GGCC | 1 cut(s) | 697 |
| HapII | CCGG | 1 cut(s) | 438 |
| HhaI | GCGC | 1 cut(s) | 488 |
| Hin1II | CATG | 6 cut(s) | 199, 253, 280, 386, 702, 801 |
| Hin6I | GCGC | 1 cut(s) | 486 |
| HinP1I | GCGC | 1 cut(s) | 486 |
| HincII | GTYRAC | 2 cut(s) | 521, 657 |
| HindII | GTYRAC | 2 cut(s) | 521, 657 |
| HinfI | GANTC | 6 cut(s) | 254, 329, 338, 533, 546, 829 |
| HpaII | CCGG | 1 cut(s) | 438 |
| HphI | GGTGA | 4 cut(s) | 84, 306, 549, 758 |
| Hpy166II | GTNNAC | 3 cut(s) | 151, 521, 657 |
| Hpy188I | TCNGA | 7 cut(s) | 43, 271, 325, 334, 532, 538, 772 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 117, 137 |
| Hpy8I | GTNNAC | 3 cut(s) | 151, 521, 657 |
| HpyAV | CCTTC | 4 cut(s) | 405, 456, 483, 677 |
| HpyCH4III | ACNGT | 3 cut(s) | 223, 513, 609 |
| HpyCH4IV | ACGT | 2 cut(s) | 368, 452 |
| HpyCH4V | TGCA | 7 cut(s) | 113, 263, 287, 599, 616, 801, 842 |
| HpyF3I | CTNAG | 5 cut(s) | 19, 185, 331, 577, 769 |
| HpySE526I | ACGT | 2 cut(s) | 368, 452 |
| Hsp92II | CATG | 6 cut(s) | 199, 253, 280, 386, 702, 801 |
| HspAI | GCGC | 1 cut(s) | 486 |
| KpnI | GGTACC | 1 cut(s) | 424 |
| Kzo9I | GATC | 3 cut(s) | 133, 192, 229 |
| LmnI | GCTCC | 3 cut(s) | 29, 126, 707 |
| Lsp1109I | GCAGC | 3 cut(s) | 470, 583, 826 |
| LweI | GCATC | 4 cut(s) | 116, 122, 209, 478 |
| MaeI | CTAG | 4 cut(s) | 204, 399, 462, 561 |
| MaeII | ACGT | 2 cut(s) | 368, 452 |
| MaeIII | GTNAC | 1 cut(s) | 563 |
| MalI | GATC | 3 cut(s) | 135, 194, 231 |
| MboI | GATC | 3 cut(s) | 133, 192, 229 |
| MboII | GAAGA | 6 cut(s) | 57, 63, 69, 75, 152, 747 |
| MflI | RGATCY | 2 cut(s) | 133, 229 |
| MhlI | GDGCHC | 2 cut(s) | 20, 392 |
| MluCI | AATT | 2 cut(s) | 160, 496 |
| MlyI | GAGTC | 3 cut(s) | 323, 332, 823 |
| MmeI | TCCRAC | 1 cut(s) | 205 |
| MseI | TTAA | 3 cut(s) | 363, 587, 847 |
| MspA1I | CMGCKG | 1 cut(s) | 581 |
| MspCI | CTTAAG | 1 cut(s) | 586 |
| MspI | CCGG | 1 cut(s) | 438 |
| MspR9I | CCNGG | 1 cut(s) | 439 |
| NciI | CCSGG | 1 cut(s) | 439 |
| NdeII | GATC | 3 cut(s) | 133, 192, 229 |
| NlaIII | CATG | 6 cut(s) | 199, 253, 280, 386, 702, 801 |
| NlaIV | GGNNCC | 2 cut(s) | 422, 640 |
| NmuCI | GTSAC | 1 cut(s) | 563 |
| PfeI | GAWTC | 3 cut(s) | 254, 533, 546 |
| PkrI | GCNGC | 3 cut(s) | 485, 598, 841 |
| PleI | GAGTC | 3 cut(s) | 323, 332, 823 |
| PpsI | GAGTC | 3 cut(s) | 323, 332, 823 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PspN4I | GGNNCC | 2 cut(s) | 422, 640 |
| PspPI | GGNCC | 1 cut(s) | 638 |
| PstI | CTGCAG | 1 cut(s) | 844 |
| PstNI | CAGNNNCTG | 1 cut(s) | 776 |
| PsuI | RGATCY | 2 cut(s) | 133, 229 |
| PvuII | CAGCTG | 1 cut(s) | 581 |
| RsaI | GTAC | 1 cut(s) | 422 |
| RsaNI | GTAC | 1 cut(s) | 421 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 3 cut(s) | 363, 587, 847 |
| SatI | GCNGC | 3 cut(s) | 484, 597, 840 |
| Sau3AI | GATC | 3 cut(s) | 133, 192, 229 |
| Sau96I | GGNCC | 1 cut(s) | 638 |
| SchI | GAGTC | 3 cut(s) | 323, 332, 823 |
| ScrFI | CCNGG | 1 cut(s) | 439 |
| SduI | GDGCHC | 2 cut(s) | 20, 392 |
| SfaNI | GCATC | 4 cut(s) | 116, 122, 209, 478 |
| SfcI | CTRYAG | 1 cut(s) | 840 |
| SinI | GGWCC | 1 cut(s) | 638 |
| SmlI | CTYRAG | 1 cut(s) | 586 |
| SmoI | CTYRAG | 1 cut(s) | 586 |
| SpeI | ACTAGT | 1 cut(s) | 461 |
| Sse9I | AATT | 2 cut(s) | 160, 496 |
| SsiI | CCGC | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 204, 399, 462, 561 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| StyD4I | CCNGG | 1 cut(s) | 437 |
| TaaI | ACNGT | 3 cut(s) | 223, 513, 609 |
| TaiI | ACGT | 2 cut(s) | 371, 455 |
| TaqI | TCGA | 3 cut(s) | 98, 156, 458 |
| TasI | AATT | 2 cut(s) | 160, 496 |
| TfiI | GAWTC | 3 cut(s) | 254, 533, 546 |
| Tru1I | TTAA | 3 cut(s) | 363, 587, 847 |
| Tru9I | TTAA | 3 cut(s) | 363, 587, 847 |
| TscAI | CASTG | 1 cut(s) | 618 |
| TseFI | GTSAC | 1 cut(s) | 563 |
| TseI | GCWGC | 3 cut(s) | 483, 596, 839 |
| Tsp45I | GTSAC | 1 cut(s) | 563 |
| TspDTI | ATGAA | 8 cut(s) | 39, 57, 63, 69, 75, 725, 741, 824 |
| TspRI | CASTG | 1 cut(s) | 618 |
| Vha464I | CTTAAG | 1 cut(s) | 586 |
| VpaK11BI | GGWCC | 1 cut(s) | 638 |
| XspI | CTAG | 4 cut(s) | 204, 399, 462, 561 |