Rorug07G0348400

BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013429
Physical Location & Seq
Forward (+)
38521844 .. 38522190
347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0348400.1

Sequence Viewer

Length: 264 bp
ATGTCATACATGGTGGGATATGGTTCAAAGTTTCCAAAGAGAATACACCACCGCGCTTCGGTGTTACCTTCTATGGATCAGCAGCCGGGCAACATTGAATGTCACGCAGGAACGCCATATTTCGAGACTCAAGCTCCAAATCAGAACTTGCTAATATGCACGATTGTGGGAGGACCTGCTGAGAACGATTCTTTCGAAGACTCTCGGTACAATGTGTACAATGACGAGAATGGGCCTGGTTTAGCCGGAAAACTAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.6

Weight (kDa)

5.45

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 76 3.7e-15 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25920
fragaria_vesca FvH4_5g39570 FvH4_5g39570
malus_domestica MD03G1297200.v1.1 MD11G1317000.v1.1
prunus_persica Prupe.8G269800_v2.0.a1
pyrus_communis pycom03g23570
rosa_chinensis RchiOBHm_Chr7g0241881
rosa_laevigata RLG00000000532
rosa_multiflora Rmu_sc0001865.1_g000002
rosa_roxburghii Rroxscaffold_3G00218510
rosa_rugosa Rorug07G0348300 Rorug07G0348400
rosa_samantha Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000
rosa_wichuraiana Rw7G042490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 52
AclWI GGATC 1 cut(s) 84
AfaI GTAC 2 cut(s) 209, 218
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 27, 98
AjnI CCWGG 1 cut(s) 235
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 173, 233
AsuC2I CCSGG 1 cut(s) 87
AsuII TTCGAA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 2 cut(s) 87, 237
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 173, 233
BmrFI CCNGG 2 cut(s) 87, 237
BpiI GAAGAC 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 235
BsiSI CCGG 2 cut(s) 86, 246
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 235
Bsp119I TTCGAA 1 cut(s) 195
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 216
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 85, 235
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 204
BsuRI GGCC 1 cut(s) 235
BveI ACCTGC 1 cut(s) 184
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 173, 233
Csp6I GTAC 2 cut(s) 208, 217
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 85, 134, 235, 245
CviKI_1 RGCY 4 cut(s) 85, 134, 235, 245
CviQI GTAC 2 cut(s) 208, 217
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 13
FaiI YATR 6 cut(s) 7, 11, 21, 74, 118, 157
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 86, 246
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 3 cut(s) 127, 188, 200
HpaII CCGG 2 cut(s) 86, 246
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 93, 99, 189, 222, 249, 259
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 63, 101
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 209
MlyI GAGTC 2 cut(s) 121, 194
MnlI CCTC 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 2 cut(s) 86, 246
MspR9I CCNGG 2 cut(s) 87, 237
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 54
NciI CCSGG 1 cut(s) 87
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 2 cut(s) 121, 194
PpsI GAGTC 2 cut(s) 121, 194
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspPI GGNCC 2 cut(s) 173, 233
PspPPI RGGWCCY 1 cut(s) 173
RsaI GTAC 2 cut(s) 209, 218
RsaNI GTAC 2 cut(s) 208, 217
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 173, 233
SchI GAGTC 2 cut(s) 121, 194
ScrFI CCNGG 2 cut(s) 87, 237
SetI ASST 3 cut(s) 70, 136, 178
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 85, 235
TaqI TCGA 2 cut(s) 123, 195
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 188
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 173
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.