BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25920 |
| fragaria_vesca | FvH4_5g39570 FvH4_5g39570 |
| malus_domestica | MD03G1297200.v1.1 MD11G1317000.v1.1 |
| prunus_persica | Prupe.8G269800_v2.0.a1 |
| pyrus_communis | pycom03g23570 |
| rosa_chinensis | RchiOBHm_Chr7g0241881 |
| rosa_laevigata | RLG00000000532 |
| rosa_multiflora | Rmu_sc0001865.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218510 |
| rosa_rugosa | Rorug07G0348300 Rorug07G0348400 |
| rosa_samantha | Rh7AG502500 Rh7BG473800 Rh7CG519400 Rh7DG488000 |
| rosa_wichuraiana | Rw7G042490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 216 |
| AccB1I | GGYRCC | 1 cut(s) | 216 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 233 |
| AdeI | CACNNNGTG | 1 cut(s) | 359 |
| AfaI | GTAC | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 233 |
| AflII | CTTAAG | 1 cut(s) | 382 |
| AflIII | ACRYGT | 1 cut(s) | 162 |
| AgsI | TTSAA | 4 cut(s) | 246, 298, 479, 580 |
| AhlI | ACTAGT | 1 cut(s) | 257 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 28 |
| AluBI | AGCT | 3 cut(s) | 49, 279, 377 |
| AluI | AGCT | 3 cut(s) | 49, 279, 377 |
| Alw21I | GWGCWC | 1 cut(s) | 188 |
| Alw26I | GTCTC | 2 cut(s) | 80, 208 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 572 |
| AoxI | GGCC | 2 cut(s) | 15, 491 |
| ApeKI | GCWGC | 3 cut(s) | 279, 392, 635 |
| Asp718I | GGTACC | 1 cut(s) | 216 |
| AspLEI | GCGC | 1 cut(s) | 284 |
| AspS9I | GGNCC | 2 cut(s) | 16, 434 |
| AsuHPI | GGTGA | 3 cut(s) | 102, 345, 554 |
| AvaII | GGWCC | 1 cut(s) | 434 |
| BanI | GGYRCC | 1 cut(s) | 216 |
| Bbv12I | GWGCWC | 1 cut(s) | 188 |
| BbvI | GCAGC | 3 cut(s) | 266, 379, 622 |
| BccI | CCATC | 2 cut(s) | 355, 448 |
| BcoDI | GTCTC | 2 cut(s) | 80, 208 |
| BcuI | ACTAGT | 1 cut(s) | 257 |
| BfaI | CTAG | 3 cut(s) | 195, 258, 357 |
| BfmI | CTRYAG | 1 cut(s) | 636 |
| BfrI | CTTAAG | 1 cut(s) | 382 |
| BisI | GCNGC | 3 cut(s) | 280, 393, 636 |
| BlsI | GCNGC | 3 cut(s) | 281, 394, 637 |
| Bme18I | GGWCC | 1 cut(s) | 434 |
| BmgT120I | GGNCC | 2 cut(s) | 16, 434 |
| BmiI | GGNNCC | 2 cut(s) | 218, 436 |
| BmrI | ACTGGG | 1 cut(s) | 243 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BmuI | ACTGGG | 1 cut(s) | 243 |
| BsaBI | GATNNNNATC | 1 cut(s) | 346 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 152, 182 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 233 |
| Bse1I | ACTGG | 2 cut(s) | 200, 238 |
| Bse8I | GATNNNNATC | 1 cut(s) | 346 |
| BseGI | GGATG | 4 cut(s) | 94, 265, 606, 619 |
| BseJI | GATNNNNATC | 1 cut(s) | 346 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BseMII | CTCAG | 3 cut(s) | 141, 387, 579 |
| BseNI | ACTGG | 2 cut(s) | 200, 238 |
| BseRI | GAGGAG | 2 cut(s) | 160, 500 |
| BseXI | GCAGC | 3 cut(s) | 266, 379, 622 |
| BsgI | GTGCAG | 2 cut(s) | 378, 431 |
| BshFI | GGCC | 2 cut(s) | 17, 493 |
| BshNI | GGYRCC | 1 cut(s) | 216 |
| BsiHKAI | GWGCWC | 1 cut(s) | 188 |
| BslFI | GGGAC | 3 cut(s) | 295, 420, 637 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BsmAI | GTCTC | 2 cut(s) | 80, 208 |
| BsmFI | GGGAC | 3 cut(s) | 295, 420, 637 |
| BsnI | GGCC | 2 cut(s) | 17, 493 |
| Bsp1286I | GDGCHC | 1 cut(s) | 188 |
| BspANI | GGCC | 2 cut(s) | 17, 493 |
| BspCNI | CTCAG | 3 cut(s) | 140, 386, 578 |
| BspLI | GGNNCC | 2 cut(s) | 218, 436 |
| BspMAI | CTGCAG | 1 cut(s) | 640 |
| BspT107I | GGYRCC | 1 cut(s) | 216 |
| BspTI | CTTAAG | 1 cut(s) | 382 |
| BsrI | ACTGG | 2 cut(s) | 200, 238 |
| Bst4CI | ACNGT | 2 cut(s) | 309, 405 |
| BstAFI | CTTAAG | 1 cut(s) | 382 |
| BstDEI | CTNAG | 4 cut(s) | 100, 127, 373, 565 |
| BstF5I | GGATG | 4 cut(s) | 94, 265, 606, 619 |
| BstHHI | GCGC | 1 cut(s) | 284 |
| BstMAI | GTCTC | 2 cut(s) | 80, 208 |
| BstSFI | CTRYAG | 1 cut(s) | 636 |
| BstV1I | GCAGC | 3 cut(s) | 266, 379, 622 |
| BsuRI | GGCC | 2 cut(s) | 17, 493 |
| BtsCI | GGATG | 4 cut(s) | 94, 265, 606, 619 |
| BtsIMutI | CAGTG | 1 cut(s) | 414 |
| CaiI | CAGNNNCTG | 1 cut(s) | 572 |
| CfoI | GCGC | 1 cut(s) | 284 |
| Cfr13I | GGNCC | 2 cut(s) | 16, 434 |
| Csp6I | GTAC | 1 cut(s) | 217 |
| CviAII | CATG | 5 cut(s) | 27, 35, 179, 495, 594 |
| CviJI | RGCY | 8 cut(s) | 17, 49, 279, 324, 377, 392, 493, 571 |
| CviKI_1 | RGCY | 8 cut(s) | 17, 49, 279, 324, 377, 392, 493, 571 |
| CviQI | GTAC | 1 cut(s) | 217 |
| DdeI | CTNAG | 4 cut(s) | 100, 127, 373, 565 |
| DraIII | CACNNNGTG | 1 cut(s) | 359 |
| Eco47I | GGWCC | 1 cut(s) | 434 |
| FaeI | CATG | 5 cut(s) | 30, 38, 182, 498, 597 |
| FaqI | GGGAC | 3 cut(s) | 295, 420, 637 |
| FatI | CATG | 5 cut(s) | 26, 34, 178, 494, 593 |
| Fnu4HI | GCNGC | 3 cut(s) | 280, 393, 636 |
| FokI | GGATG | 4 cut(s) | 101, 252, 613, 626 |
| Fsp4HI | GCNGC | 3 cut(s) | 280, 393, 636 |
| FspBI | CTAG | 3 cut(s) | 195, 258, 357 |
| GlaI | GCGC | 1 cut(s) | 283 |
| GluI | GCNGC | 3 cut(s) | 280, 393, 636 |
| HaeIII | GGCC | 2 cut(s) | 17, 493 |
| HhaI | GCGC | 1 cut(s) | 284 |
| Hin1II | CATG | 5 cut(s) | 30, 38, 182, 498, 597 |
| Hin6I | GCGC | 1 cut(s) | 282 |
| HinP1I | GCGC | 1 cut(s) | 282 |
| HincII | GTYRAC | 3 cut(s) | 43, 317, 453 |
| HindII | GTYRAC | 3 cut(s) | 43, 317, 453 |
| HinfI | GANTC | 5 cut(s) | 125, 134, 329, 342, 625 |
| HphI | GGTGA | 3 cut(s) | 102, 345, 554 |
| Hpy166II | GTNNAC | 3 cut(s) | 43, 317, 453 |
| Hpy188I | TCNGA | 5 cut(s) | 121, 130, 328, 334, 568 |
| Hpy8I | GTNNAC | 3 cut(s) | 43, 317, 453 |
| HpyAV | CCTTC | 4 cut(s) | 201, 252, 279, 473 |
| HpyCH4III | ACNGT | 2 cut(s) | 309, 405 |
| HpyCH4IV | ACGT | 1 cut(s) | 164 |
| HpyCH4V | TGCA | 4 cut(s) | 395, 412, 597, 638 |
| HpyF3I | CTNAG | 4 cut(s) | 100, 127, 373, 565 |
| HpySE526I | ACGT | 1 cut(s) | 164 |
| Hsp92II | CATG | 5 cut(s) | 30, 38, 182, 498, 597 |
| HspAI | GCGC | 1 cut(s) | 282 |
| KpnI | GGTACC | 1 cut(s) | 220 |
| LmnI | GCTCC | 1 cut(s) | 503 |
| LpnPI | CCDG | 9 cut(s) | 35, 59, 213, 219, 441, 450, 548, 583, 585 |
| Lsp1109I | GCAGC | 3 cut(s) | 266, 379, 622 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 3 cut(s) | 195, 258, 357 |
| MaeII | ACGT | 1 cut(s) | 164 |
| MaeIII | GTNAC | 1 cut(s) | 359 |
| MboII | GAAGA | 1 cut(s) | 543 |
| MhlI | GDGCHC | 1 cut(s) | 188 |
| MluCI | AATT | 2 cut(s) | 55, 292 |
| MlyI | GAGTC | 3 cut(s) | 119, 128, 619 |
| MnlI | CCTC | 7 cut(s) | 115, 181, 314, 328, 381, 478, 483 |
| MseI | TTAA | 2 cut(s) | 383, 643 |
| MspA1I | CMGCKG | 2 cut(s) | 49, 377 |
| MspCI | CTTAAG | 1 cut(s) | 382 |
| NlaIII | CATG | 5 cut(s) | 30, 38, 182, 498, 597 |
| NlaIV | GGNNCC | 2 cut(s) | 218, 436 |
| NmuCI | GTSAC | 1 cut(s) | 359 |
| PfeI | GAWTC | 2 cut(s) | 329, 342 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 233 |
| PkrI | GCNGC | 3 cut(s) | 281, 394, 637 |
| PleI | GAGTC | 3 cut(s) | 119, 128, 619 |
| PpsI | GAGTC | 3 cut(s) | 119, 128, 619 |
| PspN4I | GGNNCC | 2 cut(s) | 218, 436 |
| PspPI | GGNCC | 2 cut(s) | 16, 434 |
| PstI | CTGCAG | 1 cut(s) | 640 |
| PstNI | CAGNNNCTG | 1 cut(s) | 572 |
| PvuII | CAGCTG | 2 cut(s) | 49, 377 |
| RsaI | GTAC | 1 cut(s) | 218 |
| RsaNI | GTAC | 1 cut(s) | 217 |
| SaqAI | TTAA | 2 cut(s) | 383, 643 |
| SatI | GCNGC | 3 cut(s) | 280, 393, 636 |
| Sau96I | GGNCC | 2 cut(s) | 16, 434 |
| SchI | GAGTC | 3 cut(s) | 119, 128, 619 |
| SduI | GDGCHC | 1 cut(s) | 188 |
| SetI | ASST | 7 cut(s) | 51, 167, 218, 281, 358, 379, 430 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfcI | CTRYAG | 1 cut(s) | 636 |
| SinI | GGWCC | 1 cut(s) | 434 |
| SmlI | CTYRAG | 1 cut(s) | 382 |
| SmoI | CTYRAG | 1 cut(s) | 382 |
| SpeI | ACTAGT | 1 cut(s) | 257 |
| Sse9I | AATT | 2 cut(s) | 55, 292 |
| SspMI | CTAG | 3 cut(s) | 195, 258, 357 |
| TaaI | ACNGT | 2 cut(s) | 309, 405 |
| TaiI | ACGT | 1 cut(s) | 167 |
| TaqI | TCGA | 1 cut(s) | 254 |
| TasI | AATT | 2 cut(s) | 55, 292 |
| TfiI | GAWTC | 2 cut(s) | 329, 342 |
| Tru1I | TTAA | 2 cut(s) | 383, 643 |
| Tru9I | TTAA | 2 cut(s) | 383, 643 |
| TscAI | CASTG | 1 cut(s) | 414 |
| TseFI | GTSAC | 1 cut(s) | 359 |
| TseI | GCWGC | 3 cut(s) | 279, 392, 635 |
| Tsp45I | GTSAC | 1 cut(s) | 359 |
| TspDTI | ATGAA | 5 cut(s) | 15, 17, 521, 537, 620 |
| TspGWI | ACGGA | 1 cut(s) | 198 |
| TspRI | CASTG | 1 cut(s) | 414 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 233 |
| Vha464I | CTTAAG | 1 cut(s) | 382 |
| VpaK11BI | GGWCC | 1 cut(s) | 434 |
| XspI | CTAG | 3 cut(s) | 195, 258, 357 |