AT2G27300
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003137
Physical Location & Seq
Reverse (-)
11680276 .. 11681971
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27300.1

Sequence Viewer

Length: 1008 bp
ATGTCTAAAGAAGCTGAGATGTCGATCGCGGTGTCGGCTTTGTTCCCTGGTTTTAGATTCTCTCCTACTGATGTTGAACTTATCTCGTACTATCTTCGTCGTAAAATCGATGGTGATGAGAACTCTGTTGCTGTGATTGCTGAGGTCGAGATTTACAAGTTCGAGCCGTGGGACTTGCCAGAGGAATCGAAACTGAAATCGGAGAACGAGTGGTTTTACTTCTGCGCGAGGGGGAGGAAGTACCCGCACGGGTCACAAAGCCGGCGAGCCACACAGCTAGGATATTGGAAAGCGACCGGTAAAGAGCGGAGTGTTAAATCCGGGAACCAAGTTGTTGGAACCAAGAGAACGCTTGTATTTCATATCGGTCGGGCTCCTCGTGGCGAGAGAACGGAGTGGATTATGCATGAATACTGCATCCATGGAGCCCCACAGGATGCATTAGTGGTGTGCCGGTTAAGAAAAAATGCTGATTTTCGGGCTAGTTCGACCCAAAAAATGGAGGATGGTGTTGTGCAAGACGATGGCTACGTTGGCCAAAGAGGTGGTTTGGAGAAGGAGGACAAATCCTACTATGAATCTGAGCATCAGATACCAAATGGTGACATCGCAGAATCATCAAATGTTGTTGAGGATCAGGCCGATACCGATGATGATTGTTACGCCGAGATTCTGAACGATGATATAATAAAGCTCGACGAAGAAGCGTTGAAAGCTAGCCAAGCGTTTCGACCAACTAATCCAACTCATCAAGAAACAATATCAAGCGAGTCATCGAGTAAGAGGTCAAAATGTGGTATAAAAAAAGAATCAACGGAAACAATGAATTGTTACGCTTTGTTCAGGATCAAGAACGTTGCCGGAACCGACTCCAGCTGGAGATTCCCGAACCCGTTCAAAATCAAGAAAGATGATAGCCAGAGATTGATGAAGAATGTTCTGGCCACTACTGTTTTCTTGGCTATCTTATTTTCTTTCTTTTGGACTGTATTAATAGCTAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

335

Amino Acids

38.18

Weight (kDa)

5.98

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 139 8.3e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 307
AccII CGCG 2 cut(s) 29, 227
AciI CCGC 3 cut(s) 29, 245, 307
AclI AACGTT 1 cut(s) 855
AclWI GGATC 2 cut(s) 642, 854
AcoI YGGCCR 2 cut(s) 535, 942
AfaI GTAC 2 cut(s) 89, 242
AfiI CCNNNNNNNGG 1 cut(s) 499
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 3 cut(s) 77, 712, 898
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 6 cut(s) 14, 277, 694, 716, 876, 998
AluI AGCT 6 cut(s) 14, 277, 694, 716, 876, 998
AlwI GGATC 2 cut(s) 642, 854
AoxI GGCC 3 cut(s) 535, 639, 942
AseI ATTAAT 1 cut(s) 992
AsiGI ACCGGT 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 125, 614
AsuNHI GCTAGC 1 cut(s) 716
BalI TGGCCA 2 cut(s) 537, 944
BanII GRGCYC 2 cut(s) 376, 430
BauI CACGAG 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 141
BccI CCATC 3 cut(s) 104, 500, 518
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 1 cut(s) 322
BfaI CTAG 4 cut(s) 278, 483, 717, 999
Bme1390I CCNGG 2 cut(s) 48, 322
BmiI GGNNCC 5 cut(s) 326, 340, 375, 427, 865
BmrFI CCNGG 2 cut(s) 48, 322
BmsI GCATC 3 cut(s) 426, 427, 595
BmtI GCTAGC 1 cut(s) 720
BpmI CTGGAG 2 cut(s) 856, 898
Bpu10I CCTNAGC 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 46, 167, 421
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse118I RCCGGY 3 cut(s) 261, 296, 453
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 46, 167, 421
BseGI GGATG 3 cut(s) 417, 442, 511
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMII CTCAG 3 cut(s) 6, 132, 573
BseRI GAGGAG 1 cut(s) 366
Bsh1236I CGCG 2 cut(s) 29, 227
Bsh1285I CGRYCG 3 cut(s) 27, 297, 370
BshFI GGCC 3 cut(s) 537, 641, 944
BshTI ACCGGT 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 3 cut(s) 27, 297, 370
BsiSI CCGG 5 cut(s) 262, 297, 321, 454, 861
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 3 cut(s) 537, 641, 944
Bsp1286I GDGCHC 2 cut(s) 376, 430
Bsp143I GATC 3 cut(s) 24, 634, 846
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 3 cut(s) 29, 245, 307
BspANI GGCC 3 cut(s) 537, 641, 944
BspCNI CTCAG 3 cut(s) 7, 133, 574
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 2 cut(s) 29, 227
BspLI GGNNCC 5 cut(s) 326, 340, 375, 427, 865
BspOI GCTAGC 1 cut(s) 720
BspPI GGATC 2 cut(s) 642, 854
BsrBI CCGCTC 1 cut(s) 307
BsrFI RCCGGY 3 cut(s) 261, 296, 453
BssAI RCCGGY 3 cut(s) 261, 296, 453
BssECI CCNNGG 3 cut(s) 46, 167, 421
BssMI GATC 3 cut(s) 24, 634, 846
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 952, 988
BstC8I GCNNGC 3 cut(s) 263, 267, 718
BstDEI CTNAG 3 cut(s) 15, 141, 582
BstDSI CCRYGG 2 cut(s) 167, 421
BstF5I GGATG 3 cut(s) 417, 442, 511
BstFNI CGCG 2 cut(s) 29, 227
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 3 cut(s) 27, 637, 849
BstMBI GATC 3 cut(s) 24, 634, 846
BstMCI CGRYCG 3 cut(s) 27, 297, 370
BstMWI GCNNNNNNNGC 5 cut(s) 35, 137, 534, 713, 722
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 2 cut(s) 46, 320
BstUI CGCG 2 cut(s) 29, 227
BstXI CCANNNNNNTGG 2 cut(s) 335, 545
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 537, 641, 944
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 167, 421
BtgZI GCGATG 1 cut(s) 592
BtsCI GGATG 3 cut(s) 417, 442, 511
Cac8I GCNNGC 3 cut(s) 263, 267, 718
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 3 cut(s) 261, 296, 453
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 88, 241
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 2 cut(s) 407, 422
CviQI GTAC 2 cut(s) 88, 241
DdeI CTNAG 3 cut(s) 15, 141, 582
DpnI GATC 3 cut(s) 26, 636, 848
DpnII GATC 3 cut(s) 24, 634, 846
EaeI YGGCCR 2 cut(s) 535, 942
Eco130I CCWWGG 1 cut(s) 421
Eco24I GRGCYC 2 cut(s) 376, 430
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 421
EcoT22I ATGCAT 2 cut(s) 408, 442
EcoT38I GRGCYC 2 cut(s) 376, 430
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 2 cut(s) 410, 425
FaiI YATR 7 cut(s) 363, 404, 408, 423, 576, 686, 800
FaqI GGGAC 1 cut(s) 185
FatI CATG 2 cut(s) 406, 421
FauI CCCGC 1 cut(s) 252
FokI GGATG 3 cut(s) 404, 449, 518
FriOI GRGCYC 2 cut(s) 376, 430
FspBI CTAG 4 cut(s) 278, 483, 717, 999
GlaI GCGC 1 cut(s) 226
GsuI CTGGAG 2 cut(s) 856, 898
HaeIII GGCC 3 cut(s) 537, 641, 944
HapII CCGG 5 cut(s) 262, 297, 321, 454, 861
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 410, 425
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 9 cut(s) 57, 185, 578, 614, 670, 770, 809, 869, 882
HpaII CCGG 5 cut(s) 262, 297, 321, 454, 861
HphI GGTGA 2 cut(s) 125, 614
Hpy188I TCNGA 4 cut(s) 202, 583, 591, 675
Hpy188III TCNNGA 6 cut(s) 148, 752, 844, 850, 886, 904
Hpy99I CGWCG 2 cut(s) 102, 701
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 2 cut(s) 952, 988
HpyCH4IV ACGT 2 cut(s) 531, 855
HpyCH4V TGCA 4 cut(s) 406, 417, 440, 517
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 137, 534, 713, 722
HpyF3I CTNAG 3 cut(s) 15, 141, 582
HpySE526I ACGT 2 cut(s) 531, 855
Hsp92II CATG 2 cut(s) 410, 425
HspAI GCGC 1 cut(s) 225
KroI GCCGGC 1 cut(s) 261
KroNI GCCGGC 1 cut(s) 263
Kzo9I GATC 3 cut(s) 24, 634, 846
LmnI GCTCC 2 cut(s) 379, 425
LweI GCATC 3 cut(s) 426, 427, 595
MaeI CTAG 4 cut(s) 278, 483, 717, 999
MaeII ACGT 2 cut(s) 531, 855
MaeIII GTNAC 4 cut(s) 252, 602, 659, 830
MalI GATC 3 cut(s) 26, 636, 848
MbiI CCGCTC 1 cut(s) 307
MboI GATC 3 cut(s) 24, 634, 846
MboII GAAGA 3 cut(s) 86, 713, 943
MhlI GDGCHC 2 cut(s) 376, 430
MlsI TGGCCA 2 cut(s) 537, 944
MluCI AATT 1 cut(s) 826
MluNI TGGCCA 2 cut(s) 537, 944
MlyI GAGTC 2 cut(s) 779, 863
MmeI TCCRAC 2 cut(s) 316, 767
Mox20I TGGCCA 2 cut(s) 537, 944
Mph1103I ATGCAT 2 cut(s) 408, 442
MroNI GCCGGC 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 893
MscI TGGCCA 2 cut(s) 537, 944
MseI TTAA 3 cut(s) 315, 458, 992
Msp20I TGGCCA 2 cut(s) 537, 944
MspA1I CMGCKG 1 cut(s) 876
MspI CCGG 5 cut(s) 262, 297, 321, 454, 861
MspR9I CCNGG 2 cut(s) 48, 322
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 2 cut(s) 29, 227
MwoI GCNNNNNNNGC 5 cut(s) 35, 137, 534, 713, 722
NaeI GCCGGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 421
NdeII GATC 3 cut(s) 24, 634, 846
NgoMIV GCCGGC 1 cut(s) 261
NheI GCTAGC 1 cut(s) 716
NlaIII CATG 2 cut(s) 410, 425
NlaIV GGNNCC 5 cut(s) 326, 340, 375, 427, 865
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 2 cut(s) 252, 602
NsiI ATGCAT 2 cut(s) 408, 442
PcsI WCGNNNNNNNCGW 2 cut(s) 376, 528
PdiI GCCGGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 7 cut(s) 57, 185, 578, 614, 670, 809, 882
PflMI CCANNNNNTGG 1 cut(s) 499
PfoI TCCNGGA 1 cut(s) 320
PinAI ACCGGT 1 cut(s) 296
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 2 cut(s) 778, 863
PpsI GAGTC 2 cut(s) 778, 863
PshBI ATTAAT 1 cut(s) 992
Psp1406I AACGTT 1 cut(s) 855
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 5 cut(s) 326, 340, 375, 427, 865
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 876
RsaI GTAC 2 cut(s) 89, 242
RsaNI GTAC 2 cut(s) 88, 241
SaqAI TTAA 3 cut(s) 315, 458, 992
Sau3AI GATC 3 cut(s) 24, 634, 846
SchI GAGTC 2 cut(s) 779, 863
ScrFI CCNGG 2 cut(s) 48, 322
SduI GDGCHC 2 cut(s) 376, 430
SfaNI GCATC 3 cut(s) 426, 427, 595
Sse9I AATT 1 cut(s) 826
SsiI CCGC 3 cut(s) 29, 245, 307
SspMI CTAG 4 cut(s) 278, 483, 717, 999
StyD4I CCNGG 2 cut(s) 46, 320
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 952, 988
TaiI ACGT 2 cut(s) 534, 858
TaqI TCGA 9 cut(s) 23, 108, 147, 162, 188, 488, 696, 730, 776
TaqII GACCGA 1 cut(s) 356
TasI AATT 1 cut(s) 826
TfiI GAWTC 7 cut(s) 57, 185, 578, 614, 670, 809, 882
Tru1I TTAA 3 cut(s) 315, 458, 992
Tru9I TTAA 3 cut(s) 315, 458, 992
TseFI GTSAC 2 cut(s) 252, 602
Tsp45I GTSAC 2 cut(s) 252, 602
TspDTI ATGAA 5 cut(s) 350, 423, 591, 839, 944
TspGWI ACGGA 2 cut(s) 407, 830
Van91I CCANNNNNTGG 1 cut(s) 499
VspI ATTAAT 1 cut(s) 992
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 4 cut(s) 278, 483, 717, 999
Zsp2I ATGCAT 2 cut(s) 408, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.