Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003137

Physical Location & Seq

Genomic Coordinates Reverse (-)

15972673 .. 15975250

Gene Structure 2578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGCTGCACCACCGATCGAGCCGGCGGTGACGACGACGTTCCCTGGCTTCAAATTCTCCCCGACCGACATCGAACTTATATCTTATTACTTGAAGAGGAAGATGGATGGTTTGGAGAGATCTGTTGAGATTATACCTGAGGTTGAGATTTACAACTTCGAGCCTTGGGATTTACCTGATAAGTCTATCGTTAAATCGGATAGCGAATGGTTCTTCTTCTGTGCTCGCGGTAAGAAGTATCCCCACGGTTCACAGAACAGAAGAGCAACCAAGATAGGATATTGGAAAGCCACAGGAAAAGAGCGTAATGTGAAGTCAGGTTCTGAGGTCATTGGAACAAAGAGAACGCTTGTATTCCACATTGGCCGCGCGCCAAAAGGAGGAAGAACGGAATGGCTTATGCATGAGTACTGCATGATTGGAGTATCACTGGATGCTCTGGTTATTTGCCGACTTAGGAGGAATACTGAATTTCAAGGGAGTACAATTCAAAAGCCACCACAACCAAGTTTACCACTGGATAAGCACGTAAACTTGCGGAATGAAGCTATTTCAGAAAGTATTTATGGTTGGGAAACTATGGTTGATTTCTACTTATCAAGTGAGTCAGGGCAAGAACTACTTAGTGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTAGTGAAGAAGATTTCTATGCCGATATACTGAGGGATGAAATAGTAAAGCTAGATGATCCGGCGGTATCCGGTAATACACTGATCAATGTACCAAGGCTTCAAACAGAGTCCAATACCACAAGAGTACTACCTTTACCTGACATGGTAGACAAACAAATGCAATCGTTGCTACAGAAACTACCATTACAAAATGACACTGGAGAAGAGAACAACATATCCATGTCAAATTGCTTTATCGGTATCTACTCGATTAAGTCTATAAACCGAGCGCGATGGGACGTTGTTGTTTGGTTACTCGTTATGATAGCCGTGTTGGTGTTTTATTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

335

Amino Acids

38.06

Weight (kDa)

5.46

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 139	4.4e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27300 AT3G44290 AT3G44290 AT5G22290 AT5G22290
fragaria_vesca	FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830
malus_domestica	MD03G1150800.v1.1 MD11G1170300.v1.1
prunus_persica	Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1
pyrus_communis	pycom03g10530 pycom11g14260
rosa_chinensis	RchiOBHm_Chr5g0047091
rosa_laevigata	RLG00000034462
rosa_multiflora	Rmu_co8493309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034350
rosa_rugosa	Rorug05G0233800.1 Rorug05G0233900
rosa_samantha	Rh5AG312700 Rh5BG321900 Rh5CG348000 Rh5DG332900
rosa_wichuraiana	Rw5G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	822
AccII	CGCG	4 cut(s)	231, 372, 374, 946
AciI	CCGC	5 cut(s)	29, 231, 370, 541, 737
AclWI	GGATC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	56, 473
AfaI	GTAC	4 cut(s)	413, 487, 765, 801
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	55, 97, 479, 494, 776
AjnI	CCWGG	1 cut(s)	46
AloI	GAACNNNNNNTCC	2 cut(s)	875, 907
AluBI	AGCT	3 cut(s)	8, 551, 724
AluI	AGCT	3 cut(s)	8, 551, 724
Alw21I	GWGCWC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	2 cut(s)	56, 473
AspLEI	GCGC	3 cut(s)	374, 376, 946
AsuHPI	GGTGA	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	756, 788
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	100, 104, 942
BceAI	ACGGC	1 cut(s)	968
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	2 cut(s)	252, 751
BclI	TGATCA	1 cut(s)	756
BfaI	CTAG	2 cut(s)	675, 725
BfmI	CTRYAG	1 cut(s)	845
BfuI	GTATCC	2 cut(s)	252, 751
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	3 cut(s)	6, 9, 370
BlsI	GCNGC	3 cut(s)	7, 10, 371
BmcAI	AGTACT	2 cut(s)	413, 801
Bme1390I	CCNGG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	894
BsaAI	YACGTR	1 cut(s)	532
BsaJI	CCNNGG	4 cut(s)	46, 167, 247, 767
BsaWI	WCCGGW	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	3 cut(s)	438, 525, 877
Bse21I	CCTNAGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	4 cut(s)	46, 167, 247, 767
BseGI	GGATG	3 cut(s)	115, 442, 715
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	3 cut(s)	132, 318, 695
BseNI	ACTGG	3 cut(s)	438, 525, 877
BsePI	GCGCGC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	4 cut(s)	231, 372, 374, 946
Bsh1285I	CGRYCG	2 cut(s)	21, 69
BshFI	GGCC	1 cut(s)	369
BsiEI	CGRYCG	2 cut(s)	21, 69
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	26, 734, 744
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	965
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	18, 122, 730, 756
BspACI	CCGC	5 cut(s)	29, 231, 370, 541, 737
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	133, 319, 696
BspFNI	CGCG	4 cut(s)	231, 372, 374, 946
BspLI	GGNNCC	1 cut(s)	672
BspPI	GGATC	1 cut(s)	725
BspQI	GCTCTTC	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	3 cut(s)	438, 525, 877
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	46, 167, 247, 767
BssHII	GCGCGC	1 cut(s)	372
BssMI	GATC	4 cut(s)	18, 122, 730, 756
BssT1I	CCWWGG	2 cut(s)	167, 767
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	3 cut(s)	92, 259, 873
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstBAI	YACGTR	1 cut(s)	532
BstC8I	GCNNGC	3 cut(s)	27, 229, 374
BstDEI	CTNAG	5 cut(s)	141, 327, 458, 626, 704
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	115, 442, 715
BstFNI	CGCG	4 cut(s)	231, 372, 374, 946
BstHHI	GCGC	3 cut(s)	374, 376, 946
BstKTI	GATC	4 cut(s)	21, 125, 733, 759
BstMBI	GATC	4 cut(s)	18, 122, 730, 756
BstMCI	CGRYCG	2 cut(s)	21, 69
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	845
BstUI	CGCG	4 cut(s)	231, 372, 374, 946
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
Bsu36I	CCTNAGG	1 cut(s)	141
BsuI	GTATCC	2 cut(s)	252, 751
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	961
BtsCI	GGATG	3 cut(s)	115, 442, 715
BtsIMutI	CAGTG	4 cut(s)	431, 518, 752, 870
Cac8I	GCNNGC	3 cut(s)	27, 229, 374
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	3 cut(s)	374, 376, 946
Cfr10I	RCCGGY	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	412, 486, 764, 800
CviAII	CATG	4 cut(s)	407, 418, 817, 895
CviQI	GTAC	4 cut(s)	412, 486, 764, 800
DdeI	CTNAG	5 cut(s)	141, 327, 458, 626, 704
DpnI	GATC	4 cut(s)	20, 124, 732, 758
DpnII	GATC	4 cut(s)	18, 122, 730, 756
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	3 cut(s)	92, 259, 873
EarI	CTCTTC	3 cut(s)	92, 259, 873
Eco130I	CCWWGG	2 cut(s)	167, 767
Eco81I	CCTNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	167, 767
EcoT22I	ATGCAT	1 cut(s)	408
ErhI	CCWWGG	2 cut(s)	167, 767
FaeI	CATG	4 cut(s)	410, 421, 820, 898
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	4 cut(s)	406, 417, 816, 894
FbaI	TGATCA	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	3 cut(s)	6, 9, 370
FokI	GGATG	3 cut(s)	122, 449, 722
Fsp4HI	GCNGC	3 cut(s)	6, 9, 370
FspBI	CTAG	2 cut(s)	675, 725
GlaI	GCGC	3 cut(s)	373, 375, 945
GluI	GCNGC	3 cut(s)	6, 9, 370
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	3 cut(s)	26, 734, 744
HhaI	GCGC	3 cut(s)	374, 376, 946
Hin1II	CATG	4 cut(s)	410, 421, 820, 898
Hin6I	GCGC	3 cut(s)	372, 374, 944
HinP1I	GCGC	3 cut(s)	372, 374, 944
HinfI	GANTC	3 cut(s)	608, 641, 782
HpaII	CCGG	3 cut(s)	26, 734, 744
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	4 cut(s)	254, 515, 535, 823
Hpy188I	TCNGA	3 cut(s)	202, 328, 559
Hpy8I	GTNNAC	4 cut(s)	254, 515, 535, 823
Hpy99I	CGWCG	2 cut(s)	40, 43
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	3 cut(s)	41, 531, 954
HpyCH4V	TGCA	4 cut(s)	11, 406, 417, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	5 cut(s)	141, 327, 458, 626, 704
HpySE526I	ACGT	3 cut(s)	41, 531, 954
Hsp92II	CATG	4 cut(s)	410, 421, 820, 898
HspAI	GCGC	3 cut(s)	372, 374, 944
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	4 cut(s)	18, 122, 730, 756
LguI	GCTCTTC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	675, 725
MaeII	ACGT	3 cut(s)	41, 531, 954
MaeIII	GTNAC	2 cut(s)	31, 966
MalI	GATC	4 cut(s)	20, 124, 732, 758
MboI	GATC	4 cut(s)	18, 122, 730, 756
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	4 cut(s)	56, 473, 489, 901
MlyI	GAGTC	2 cut(s)	617, 791
MnlI	CCTC	6 cut(s)	93, 136, 322, 377, 456, 699
Mph1103I	ATGCAT	1 cut(s)	408
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	2 cut(s)	195, 927
MslI	CAYNNNNRTG	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	3 cut(s)	26, 734, 744
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	4 cut(s)	231, 372, 374, 946
MwoI	GCNNNNNNNGC	1 cut(s)	841
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	4 cut(s)	18, 122, 730, 756
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	410, 421, 820, 898
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	408
PauI	GCGCGC	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	641
PkrI	GCNGC	3 cut(s)	7, 10, 371
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	2 cut(s)	616, 790
PpsI	GAGTC	2 cut(s)	616, 790
Ppu21I	YACGTR	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	122
PteI	GCGCGC	1 cut(s)	372
PvuI	CGATCG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	4 cut(s)	413, 487, 765, 801
RsaNI	GTAC	4 cut(s)	412, 486, 764, 800
RseI	CAYNNNNRTG	1 cut(s)	893
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	195, 927
SatI	GCNGC	3 cut(s)	6, 9, 370
Sau3AI	GATC	4 cut(s)	18, 122, 730, 756
ScaI	AGTACT	2 cut(s)	413, 801
SchI	GAGTC	2 cut(s)	617, 791
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	845
SmiMI	CAYNNNNRTG	1 cut(s)	893
Sse9I	AATT	4 cut(s)	56, 473, 489, 901
SsiI	CCGC	5 cut(s)	29, 231, 370, 541, 737
SspMI	CTAG	2 cut(s)	675, 725
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	2 cut(s)	167, 767
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	3 cut(s)	44, 534, 957
TaqI	TCGA	4 cut(s)	21, 75, 162, 923
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	56, 473, 489, 901
TatI	WGTACW	3 cut(s)	411, 485, 799
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	2 cut(s)	195, 927
Tru9I	TTAA	2 cut(s)	195, 927
TscAI	CASTG	4 cut(s)	438, 525, 759, 877
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	561, 726
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	4 cut(s)	438, 525, 759, 877
XapI	RAATTY	2 cut(s)	56, 473
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	2 cut(s)	675, 725
ZrmI	AGTACT	2 cut(s)	413, 801
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.