Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003137

Physical Location & Seq

Genomic Coordinates Reverse (-)

7375839 .. 7377776

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGACACGAAGGCGGTTGGAGTTTCTAAGGATACGGCGGCGTCGATGGAAGCGTCGACGGTGTTTCCTGGGTTTAAATTCTCGCCGACGGATGTGGAGTTGATTTCGTATTACCTGAAGCGGAAGATGGATGGCTTGGAGAGGTCCGTTGAGGTTATACCGGACCTTGAGATTTACAATTTCGAGCCTTGGGATTTACCCGATAAGTCGATTGTGAAATCTGATAGCGAGTGGTTCTTCTTCTGTGCGCGTGGGAAAAAGTATCCACATGGTTCACAGAACAGGAGAGCAACGAAGATGGGATACTGGAAAGCAACTGGGAAAGAGCGTGATGTGAAGTCTGGTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTTTTCCATATTGGTCGTGCACCAAAAGGCGAAAGAACTGACTGGATTATGCACGAGTACTGCGTGAAAGGAGTATCTCTGGATGATGCTATGGTTGTTTGCCGGGTTAGGAGGAACAAAGAATACAATAGTGGTACAAGTCAGAAGGCACCAAAGCCAAATTCATCAGCCGAGAAGCATGCGAAAGTCCAAAATGGCGCTACGAGTTCAGGGAGCCCGTCTGATTGGGACAACTTGGTTGATTTTTACCTAGCAGGTGAATCAGGGGAGAAACTACTCGCTGAGATGGCAGAGTCATCAGAAAATCTACAGGTGGATAATGACGAGGATTTCTTTGCGGATATCCTAAGAGACGAAATCATCAATCTCGATGAAGCGGTGATGACAGGGAACACACCAAACGAAGTGCCAACACTAGAATCAGCATCAATGGAGATAAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCATCACTGTTAGAGGAAAGACCATCACAGAAGAAGAAAGGAAAAGACGCCACGGAATCATTGTCGAGCTGCTTCGTGGGTTTATACTCGATCAAATCAGTGAACAAGGCACGATGGGATGTTATTATAGGTGTAGTGGCTCTGATAGCAATGTTGTTTTATCTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009626 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012501 GO:0012505 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034050 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

340

Amino Acids

38.05

Weight (kDa)

5.42

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 146	6.6e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27300 AT3G44290 AT3G44290 AT5G22290 AT5G22290
fragaria_vesca	FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830 FvH4_3g25830
malus_domestica	MD03G1150800.v1.1 MD11G1170300.v1.1
prunus_persica	Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1 Prupe.6G138100_v2.0.a1
pyrus_communis	pycom03g10530 pycom11g14260
rosa_chinensis	RchiOBHm_Chr5g0047091
rosa_laevigata	RLG00000034462
rosa_multiflora	Rmu_co8493309.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034350
rosa_rugosa	Rorug05G0233800.1 Rorug05G0233900
rosa_samantha	Rh5AG312700 Rh5BG321900 Rh5CG348000 Rh5DG332900
rosa_wichuraiana	Rw5G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	56
AccII	CGCG	1 cut(s)	250
AciI	CCGC	5 cut(s)	14, 38, 121, 713, 752
AcsI	RAATTY	2 cut(s)	77, 535
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	2 cut(s)	41, 900
AfaI	GTAC	3 cut(s)	434, 511, 819
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	520, 552
AluBI	AGCT	1 cut(s)	921
AluI	AGCT	1 cut(s)	921
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	720
Alw44I	GTGCAC	1 cut(s)	393
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	921
ApoI	RAATTY	2 cut(s)	77, 535
AspLEI	GCGC	2 cut(s)	250, 575
AspS9I	GGNCC	2 cut(s)	144, 163
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	644, 766
AvaII	GGWCC	2 cut(s)	144, 163
BaeGI	GKGCMC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
BauI	CACGAG	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	7 cut(s)	40, 121, 125, 292, 655, 883, 960
BceAI	ACGGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	1 cut(s)	69
BciVI	GTATCC	3 cut(s)	25, 273, 296
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	3 cut(s)	626, 791, 1016
BfmI	CTRYAG	1 cut(s)	683
BfoI	RGCGCY	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	620
BfuI	GTATCC	3 cut(s)	25, 273, 296
BisI	GCNGC	2 cut(s)	39, 922
BlsI	GCNGC	2 cut(s)	40, 923
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	69, 479
Bme18I	GGWCC	2 cut(s)	144, 163
BmgT120I	GGNCC	2 cut(s)	144, 163
BmiI	GGNNCC	2 cut(s)	525, 590
BmrFI	CCNGG	2 cut(s)	69, 479
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	451, 809
BmuI	ACTGGG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	479
BsaHI	GRCGYC	2 cut(s)	41, 900
BsaJI	CCNNGG	3 cut(s)	68, 188, 903
BsaWI	WCCGGW	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	311, 322, 422
Bse3DI	GCAATG	1 cut(s)	1008
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	68, 188, 903
BseGI	GGATG	4 cut(s)	97, 136, 463, 976
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	2 cut(s)	339, 648
BseNI	ACTGG	3 cut(s)	311, 322, 422
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	908
Bsh1236I	CGCG	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	161, 478
BslFI	GGGAC	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	720
BsmBI	CGTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	397, 593
Bsp143I	GATC	1 cut(s)	942
BspACI	CCGC	5 cut(s)	14, 38, 121, 713, 752
BspCNI	CTCAG	2 cut(s)	340, 649
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	525, 590
BspMI	ACCTGC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	1008
BsrI	ACTGG	3 cut(s)	311, 322, 422
BssECI	CCNNGG	3 cut(s)	68, 188, 903
BssMI	GATC	1 cut(s)	942
BssNI	GRCGYC	2 cut(s)	41, 900
BssSI	CACGAG	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	61, 861
BstACI	GRCGYC	2 cut(s)	41, 900
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	4 cut(s)	27, 348, 657, 722
BstDSI	CCRYGG	1 cut(s)	903
BstF5I	GGATG	4 cut(s)	97, 136, 463, 976
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	2 cut(s)	250, 575
BstKTI	GATC	1 cut(s)	945
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	1 cut(s)	942
BstMWI	GCNNNNNNNGC	2 cut(s)	662, 998
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	67, 477
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	908
BsuI	GTATCC	3 cut(s)	25, 273, 296
BtgI	CCRYGG	1 cut(s)	903
BtsCI	GGATG	4 cut(s)	97, 136, 463, 976
BtsIMutI	CAGTG	2 cut(s)	857, 957
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	2 cut(s)	250, 575
Cfr13I	GGNCC	2 cut(s)	144, 163
CseI	GACGC	4 cut(s)	30, 42, 379, 908
Csp6I	GTAC	3 cut(s)	433, 510, 818
CviAII	CATG	3 cut(s)	269, 554, 835
CviJI	RGCY	7 cut(s)	135, 187, 532, 545, 591, 921, 992
CviKI_1	RGCY	7 cut(s)	135, 187, 532, 545, 591, 921, 992
CviQI	GTAC	3 cut(s)	433, 510, 818
DdeI	CTNAG	4 cut(s)	27, 348, 657, 722
DpnI	GATC	1 cut(s)	944
DpnII	GATC	1 cut(s)	942
DraI	TTTAAA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	593
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	2 cut(s)	144, 163
Eco57I	CTGAAG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	3 cut(s)	272, 557, 838
FaiI	YATR	9 cut(s)	158, 270, 384, 425, 467, 555, 836, 937, 980
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	3 cut(s)	268, 553, 834
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	39, 922
FokI	GGATG	4 cut(s)	104, 143, 470, 983
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	2 cut(s)	39, 922
FspBI	CTAG	3 cut(s)	626, 791, 1016
GlaI	GCGC	2 cut(s)	249, 574
GluI	GCNGC	2 cut(s)	39, 922
HaeII	RGCGCY	1 cut(s)	576
HapII	CCGG	2 cut(s)	161, 478
HgaI	GACGC	4 cut(s)	30, 42, 379, 908
HhaI	GCGC	2 cut(s)	250, 575
Hin1I	GRCGYC	2 cut(s)	41, 900
Hin1II	CATG	3 cut(s)	272, 557, 838
Hin6I	GCGC	2 cut(s)	248, 573
HinP1I	GCGC	2 cut(s)	248, 573
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	4 cut(s)	635, 668, 794, 908
HpaII	CCGG	2 cut(s)	161, 478
HphI	GGTGA	2 cut(s)	644, 766
Hpy166II	GTNNAC	4 cut(s)	57, 275, 395, 955
Hpy188I	TCNGA	6 cut(s)	223, 349, 519, 598, 676, 996
Hpy188III	TCNNGA	3 cut(s)	455, 743, 1016
Hpy8I	GTNNAC	4 cut(s)	57, 275, 395, 955
Hpy99I	CGWCG	4 cut(s)	46, 58, 61, 91
HpyAV	CCTTC	2 cut(s)	4, 514
HpyCH4III	ACNGT	2 cut(s)	61, 861
HpyCH4V	TGCA	2 cut(s)	395, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	662, 998
HpyF3I	CTNAG	4 cut(s)	27, 348, 657, 722
Hsp92I	GRCGYC	2 cut(s)	41, 900
Hsp92II	CATG	3 cut(s)	272, 557, 838
HspAI	GCGC	2 cut(s)	248, 573
Kzo9I	GATC	1 cut(s)	942
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	1 cut(s)	908
LweI	GCATC	2 cut(s)	451, 809
MaeI	CTAG	3 cut(s)	626, 791, 1016
MalI	GATC	1 cut(s)	944
MboI	GATC	1 cut(s)	942
MboII	GAAGA	6 cut(s)	136, 229, 232, 307, 895, 898
MhlI	GDGCHC	2 cut(s)	397, 593
MluCI	AATT	3 cut(s)	77, 178, 535
MlyI	GAGTC	1 cut(s)	677
MnlI	CCTC	7 cut(s)	135, 145, 343, 360, 480, 694, 859
MseI	TTAA	1 cut(s)	75
MspI	CCGG	2 cut(s)	161, 478
MspR9I	CCNGG	2 cut(s)	69, 479
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	662, 998
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	1 cut(s)	942
NlaIII	CATG	3 cut(s)	272, 557, 838
NlaIV	GGNNCC	2 cut(s)	525, 590
NmeAIII	GCCGAG	1 cut(s)	571
NspI	RCATGY	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	557
PaqCI	CACCTGC	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	3 cut(s)	41, 50, 435
PfeI	GAWTC	3 cut(s)	635, 794, 908
PkrI	GCNGC	2 cut(s)	40, 923
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	525, 590
PspPI	GGNCC	2 cut(s)	144, 163
PsrI	GAACNNNNNNTAC	2 cut(s)	482, 514
RsaI	GTAC	3 cut(s)	434, 511, 819
RsaNI	GTAC	3 cut(s)	433, 510, 818
SalI	GTCGAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	39, 922
Sau3AI	GATC	1 cut(s)	942
Sau96I	GGNCC	2 cut(s)	144, 163
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	2 cut(s)	69, 479
SduI	GDGCHC	2 cut(s)	397, 593
SfaNI	GCATC	2 cut(s)	451, 809
SfcI	CTRYAG	1 cut(s)	683
SgrDI	CGTCGACG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	144, 163
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	3 cut(s)	77, 178, 535
SsiI	CCGC	5 cut(s)	14, 38, 121, 713, 752
SspMI	CTAG	3 cut(s)	626, 791, 1016
StyD4I	CCNGG	2 cut(s)	67, 477
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	61, 861
TaqI	TCGA	7 cut(s)	44, 56, 183, 209, 744, 917, 941
TasI	AATT	3 cut(s)	77, 178, 535
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	635, 794, 908
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	2 cut(s)	864, 957
TseI	GCWGC	1 cut(s)	921
TspDTI	ATGAA	2 cut(s)	528, 762
TspGWI	ACGGA	3 cut(s)	104, 136, 920
TspRI	CASTG	2 cut(s)	864, 957
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	144, 163
XapI	RAATTY	2 cut(s)	77, 535
XbaI	TCTAGA	1 cut(s)	1015
XceI	RCATGY	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	3 cut(s)	626, 791, 1016
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.