MD11G1170300.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003137
Physical Location & Seq
Forward (+)
18352437 .. 18365884
13448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1170300.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGTCTCTCTTGCTTTTTCTCGCTAAGAAAAGAAACAGCAGAGAGACAGAGACAAAGAAAGAAGAGATGGGTGCGGTTTCGAAGGAGGCTCAGCTTTCTATAGCTGCCTCTTCCATGTTTCCGGGGTTTAGGTTTTCACCGACCGACGAGGAATTGATTTCCTACTACCTGAAGAACAAGTTGGAGGGACCGGTGCCCGGGAAGAGCGTGGAGGTCATCTCCGAGGTTGATATCTGCAATTTCGAGCCCTGGGACTTGCCAGCTAAATCTGTCATTCAATCGGAAAATGAGTGGTTCTTCTTTTCTCCACGAGGAAGAAAGTACCCAAATGGATCACAAAGTAGAAGAGCAACAGAATTCGGTTATTGGAAAGCCACAGGAAAGGAACGTAACATAAAGTCAAGTTCTAACGTTATTGGTACAAAGAGGACACTTGTGTTCCACATAGGTCGTGCACCAAAAGGGGAAAGGACAGAATGGATTATGCACGAGTACTGCATAAATGATAAACCCCAGGATTCTATGGTTGTTTGCCGCCTCCGGAAGAACAGTGAGTTTCGTTTGAATGACACCACAAACGGAGGTTCTTCAAGTCGAACTCCTTTATCAACTATGCAAAATGATGGAAGTGCCGTCTCTGAAATTGGTAATGACCAAGGGGATAAGGCAGTTGAATGCAATTCGAAGAAGTCTACTAGCAGTCATGATTCTCATTCTATTGAGCAAATTGATTCTGCATCCGACTCCTACCCAAAACCGGTAACAGATGCTATGCAGACAGACTCTAATGGCCACCAGAAGGGTTCTTATGATGAAGACTTCTATGCGGAGATACTGAACGATGATATAATCAAACTAGATGAATCTTCCGTGCCTGCTGCTCATATGATGCCAGTTGCTGCCAACAACTCAGAGGCTGAACATCAATCTCAACAACATATGCAAGCCACTTTGTCGCAAGCAGTTCCTTTCCAAGGTACTGCAAACCGAAGAATCCATTTGAGAAAGAGAAAGGAAAAGTTTTGTGCAGAATCACAGAACTCTTCCAACTCAGAGCAATCACGAAAAGCTTTAGTGAATAGGATGGACGATCGACATATGTTATTATATGTATTTTTTGTTTTTCTGGTACTGCTGGCTGTGTTTCTATCCAATTTTTGTTTTCCTGACGTTGCTGGCTCTGTTTCTGCTCTCGTTGGAAAGATCCTGGCAAGTCAAAAACATCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

411

Amino Acids

45.99

Weight (kDa)

6.87

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 41 - 166 1.7e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 692
AccIII TCCGGA 1 cut(s) 540
AciI CCGC 3 cut(s) 74, 535, 827
AclI AACGTT 1 cut(s) 411
AclWI GGATC 2 cut(s) 340, 1198
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 5 cut(s) 323, 421, 494, 979, 1131
AfiI CCNNNNNNNGG 4 cut(s) 197, 757, 799, 974
AflIII ACRYGT 1 cut(s) 1227
AgeI ACCGGT 2 cut(s) 190, 757
AgsI TTSAA 4 cut(s) 278, 565, 591, 674
AjnI CCWGG 3 cut(s) 248, 513, 1206
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 4 cut(s) 94, 104, 263, 1070
AluI AGCT 4 cut(s) 94, 104, 263, 1070
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 4 cut(s) 9, 38, 44, 640
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 2 cut(s) 340, 1198
AlwNI CAGNNNCTG 2 cut(s) 899, 917
Ama87I CYCGRG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 540
AoxI GGCC 1 cut(s) 790
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 3 cut(s) 104, 878, 899
ApoI RAATTY 1 cut(s) 356
AsiGI ACCGGT 2 cut(s) 190, 757
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 3 cut(s) 123, 198, 199
AsuHPI GGTGA 1 cut(s) 129
AsuII TTCGAA 2 cut(s) 80, 683
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 2 cut(s) 198, 457
BalI TGGCCA 1 cut(s) 792
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 2 cut(s) 309, 488
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 91, 865, 886
BccI CCATC 3 cut(s) 61, 617, 1078
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 3 cut(s) 250, 515, 1208
BcnI CCSGG 3 cut(s) 123, 198, 199
BcoDI GTCTC 4 cut(s) 9, 38, 44, 640
BfaI CTAG 2 cut(s) 696, 857
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 4 cut(s) 105, 535, 879, 900
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 4 cut(s) 106, 536, 880, 901
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 6 cut(s) 123, 198, 199, 250, 515, 1208
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 189, 195
BmrFI CCNGG 6 cut(s) 123, 198, 199, 250, 515, 1208
BmsI GCATC 3 cut(s) 746, 757, 879
BpiI GAAGAC 1 cut(s) 822
BplI GAGNNNNNCTC 2 cut(s) 203, 235
Bpu1102I GCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 2 cut(s) 80, 683
BpuMI CCSGG 3 cut(s) 123, 198, 199
BsaJI CCNNGG 8 cut(s) 122, 197, 222, 248, 249, 513, 655, 973
BsaWI WCCGGW 3 cut(s) 190, 540, 757
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 757, 799, 974
Bse118I RCCGGY 2 cut(s) 190, 757
Bse1I ACTGG 1 cut(s) 893
BseAI TCCGGA 1 cut(s) 540
BseBI CCWGG 3 cut(s) 250, 515, 1208
BseDI CCNNGG 8 cut(s) 122, 197, 222, 248, 249, 513, 655, 973
BseGI GGATG 2 cut(s) 737, 1089
BseLI CCNNNNNNNGG 4 cut(s) 197, 757, 799, 974
BseMII CTCAG 3 cut(s) 104, 924, 1065
BseNI ACTGG 1 cut(s) 893
BseSI GKGCMC 2 cut(s) 198, 457
BseXI GCAGC 3 cut(s) 91, 865, 886
BsgI GTGCAG 1 cut(s) 1047
Bsh1285I CGRYCG 2 cut(s) 144, 1093
BshFI GGCC 1 cut(s) 792
BshNI GGYRCC 1 cut(s) 193
BshTI ACCGGT 2 cut(s) 190, 757
BsiEI CGRYCG 2 cut(s) 144, 1093
BsiHKAI GWGCWC 1 cut(s) 457
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 5 cut(s) 122, 191, 198, 541, 758
BslFI GGGAC 2 cut(s) 201, 266
BslI CCNNNNNNNGG 4 cut(s) 197, 757, 799, 974
BsmAI GTCTC 4 cut(s) 9, 38, 44, 640
BsmBI CGTCTC 1 cut(s) 640
BsmFI GGGAC 2 cut(s) 201, 266
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 1 cut(s) 792
BsoBI CYCGRG 1 cut(s) 197
Bsp119I TTCGAA 2 cut(s) 80, 683
Bsp1286I GDGCHC 3 cut(s) 198, 249, 457
Bsp13I TCCGGA 1 cut(s) 540
Bsp143I GATC 3 cut(s) 332, 1090, 1203
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 3 cut(s) 74, 535, 827
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 3 cut(s) 103, 923, 1064
BspEI TCCGGA 1 cut(s) 540
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 189, 195
BspPI GGATC 2 cut(s) 340, 1198
BspQI GCTCTTC 2 cut(s) 197, 340
BspT104I TTCGAA 2 cut(s) 80, 683
BspT107I GGYRCC 1 cut(s) 193
BsrFI RCCGGY 2 cut(s) 190, 757
BsrI ACTGG 1 cut(s) 893
BssAI RCCGGY 2 cut(s) 190, 757
BssECI CCNNGG 8 cut(s) 122, 197, 222, 248, 249, 513, 655, 973
BssMI GATC 3 cut(s) 332, 1090, 1203
BssSI CACGAG 2 cut(s) 309, 488
BssT1I CCWWGG 2 cut(s) 655, 973
Bst2BI CACGAG 2 cut(s) 309, 488
Bst2UI CCWGG 3 cut(s) 250, 515, 1208
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 5 cut(s) 57, 115, 197, 340, 1048
BstBI TTCGAA 2 cut(s) 80, 683
BstC8I GCNNGC 6 cut(s) 261, 876, 945, 960, 1137, 1177
BstDEI CTNAG 4 cut(s) 24, 90, 910, 1051
BstENI CCTNNNNNAGG 1 cut(s) 972
BstF5I GGATG 2 cut(s) 737, 1089
BstKTI GATC 3 cut(s) 335, 1093, 1206
BstMAI GTCTC 4 cut(s) 9, 38, 44, 640
BstMBI GATC 3 cut(s) 332, 1090, 1203
BstMCI CGRYCG 2 cut(s) 144, 1093
BstNI CCWGG 3 cut(s) 250, 515, 1208
BstNSI RCATGY 1 cut(s) 1231
BstSCI CCNGG 6 cut(s) 121, 196, 197, 248, 513, 1206
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 2 cut(s) 198, 457
BstV1I GCAGC 3 cut(s) 91, 865, 886
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 1 cut(s) 1203
BstYI RGATCY 1 cut(s) 1203
BsuRI GGCC 1 cut(s) 792
BtsCI GGATG 2 cut(s) 737, 1089
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 6 cut(s) 261, 876, 945, 960, 1137, 1177
CaiI CAGNNNCTG 2 cut(s) 899, 917
CciI TCATGA 1 cut(s) 703
Cfr10I RCCGGY 2 cut(s) 190, 757
Cfr13I GGNCC 1 cut(s) 188
Cfr9I CCCGGG 1 cut(s) 197
Csp6I GTAC 5 cut(s) 322, 420, 493, 978, 1130
CspAI ACCGGT 2 cut(s) 190, 757
CviAII CATG 3 cut(s) 115, 704, 1228
CviQI GTAC 5 cut(s) 322, 420, 493, 978, 1130
DdeI CTNAG 4 cut(s) 24, 90, 910, 1051
DpnI GATC 3 cut(s) 334, 1092, 1205
DpnII GATC 3 cut(s) 332, 1090, 1203
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 5 cut(s) 57, 115, 197, 340, 1048
EarI CTCTTC 5 cut(s) 57, 115, 197, 340, 1048
Eco130I CCWWGG 2 cut(s) 655, 973
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 972
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 248, 513, 1206
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 655, 973
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 655, 973
Esp3I CGTCTC 1 cut(s) 640
FaeI CATG 3 cut(s) 118, 707, 1231
FaqI GGGAC 2 cut(s) 201, 266
FatI CATG 3 cut(s) 114, 703, 1227
FauNDI CATATG 3 cut(s) 885, 939, 1098
FblI GTMKAC 1 cut(s) 692
Fnu4HI GCNGC 4 cut(s) 105, 535, 879, 900
FokI GGATG 2 cut(s) 724, 1096
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 105, 535, 879, 900
FspBI CTAG 2 cut(s) 696, 857
GluI GCNGC 4 cut(s) 105, 535, 879, 900
HaeIII GGCC 1 cut(s) 792
HapII CCGG 5 cut(s) 122, 191, 198, 541, 758
Hin1II CATG 3 cut(s) 118, 707, 1231
HindIII AAGCTT 1 cut(s) 1068
HinfI GANTC 8 cut(s) 518, 707, 731, 743, 782, 863, 993, 1031
HpaII CCGG 5 cut(s) 122, 191, 198, 541, 758
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 455, 693
Hpy188I TCNGA 6 cut(s) 223, 283, 640, 742, 913, 1054
Hpy188III TCNNGA 4 cut(s) 541, 704, 1062, 1166
Hpy8I GTNNAC 2 cut(s) 455, 693
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 76, 793
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 3 cut(s) 388, 411, 1170
HpyF3I CTNAG 4 cut(s) 24, 90, 910, 1051
HpySE526I ACGT 3 cut(s) 388, 411, 1170
Hsp92II CATG 3 cut(s) 118, 707, 1231
Kpn2I TCCGGA 1 cut(s) 540
Kzo9I GATC 3 cut(s) 332, 1090, 1203
LguI GCTCTTC 2 cut(s) 197, 340
Lsp1109I GCAGC 3 cut(s) 91, 865, 886
LweI GCATC 3 cut(s) 746, 757, 879
MaeI CTAG 2 cut(s) 696, 857
MaeII ACGT 3 cut(s) 388, 411, 1170
MaeIII GTNAC 2 cut(s) 389, 760
MalI GATC 3 cut(s) 334, 1092, 1205
MboI GATC 3 cut(s) 332, 1090, 1203
MflI RGATCY 1 cut(s) 1203
MhlI GDGCHC 3 cut(s) 198, 249, 457
MlsI TGGCCA 1 cut(s) 792
MluCI AATT 7 cut(s) 152, 238, 356, 642, 679, 726, 1153
MluNI TGGCCA 1 cut(s) 792
MlyI GAGTC 2 cut(s) 737, 776
MmeI TCCRAC 4 cut(s) 162, 765, 1071, 1177
Mox20I TGGCCA 1 cut(s) 792
MroI TCCGGA 1 cut(s) 540
MscI TGGCCA 1 cut(s) 792
Msp20I TGGCCA 1 cut(s) 792
MspI CCGG 5 cut(s) 122, 191, 198, 541, 758
MspR9I CCNGG 6 cut(s) 123, 198, 199, 250, 515, 1208
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 3 cut(s) 250, 515, 1208
NciI CCSGG 3 cut(s) 123, 198, 199
NdeI CATATG 3 cut(s) 885, 939, 1098
NdeII GATC 3 cut(s) 332, 1090, 1203
NlaIII CATG 3 cut(s) 118, 707, 1231
NlaIV GGNNCC 2 cut(s) 189, 195
NspI RCATGY 1 cut(s) 1231
NspV TTCGAA 2 cut(s) 80, 683
PagI TCATGA 1 cut(s) 703
PasI CCCWGGG 1 cut(s) 249
PciI ACATGT 1 cut(s) 1227
PciSI GCTCTTC 2 cut(s) 197, 340
PctI GAATGC 1 cut(s) 680
PfeI GAWTC 6 cut(s) 518, 707, 731, 863, 993, 1031
PinAI ACCGGT 2 cut(s) 190, 757
PkrI GCNGC 4 cut(s) 106, 536, 880, 901
Ple19I CGATCG 1 cut(s) 1093
PleI GAGTC 2 cut(s) 737, 776
PpsI GAGTC 2 cut(s) 737, 776
PscI ACATGT 1 cut(s) 1227
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 248, 513, 1206
PspGI CCWGG 3 cut(s) 248, 513, 1206
PspN4I GGNNCC 2 cut(s) 189, 195
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 2 cut(s) 899, 917
PsuI RGATCY 1 cut(s) 1203
PvuI CGATCG 1 cut(s) 1093
RsaI GTAC 5 cut(s) 323, 421, 494, 979, 1131
RsaNI GTAC 5 cut(s) 322, 420, 493, 978, 1130
SapI GCTCTTC 2 cut(s) 197, 340
SatI GCNGC 4 cut(s) 105, 535, 879, 900
Sau3AI GATC 3 cut(s) 332, 1090, 1203
Sau96I GGNCC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 2 cut(s) 737, 776
ScrFI CCNGG 6 cut(s) 123, 198, 199, 250, 515, 1208
SduI GDGCHC 3 cut(s) 198, 249, 457
SfaNI GCATC 3 cut(s) 746, 757, 879
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 2 cut(s) 80, 683
SinI GGWCC 1 cut(s) 188
SmaI CCCGGG 1 cut(s) 199
Sse9I AATT 7 cut(s) 152, 238, 356, 642, 679, 726, 1153
SsiI CCGC 3 cut(s) 74, 535, 827
SspMI CTAG 2 cut(s) 696, 857
StyD4I CCNGG 6 cut(s) 121, 196, 197, 248, 513, 1206
StyI CCWWGG 2 cut(s) 655, 973
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 3 cut(s) 391, 414, 1173
TaqI TCGA 5 cut(s) 80, 243, 595, 683, 1093
TaqII GACCGA 1 cut(s) 158
TasI AATT 7 cut(s) 152, 238, 356, 642, 679, 726, 1153
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 537
TfiI GAWTC 6 cut(s) 518, 707, 731, 863, 993, 1031
TscAI CASTG 1 cut(s) 556
TseI GCWGC 3 cut(s) 104, 878, 899
TspDTI ATGAA 2 cut(s) 828, 876
TspGWI ACGGA 2 cut(s) 594, 859
TspMI CCCGGG 1 cut(s) 197
TspRI CASTG 1 cut(s) 556
VneI GTGCAC 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 972
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 1231
XmaI CCCGGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 692
XspI CTAG 2 cut(s) 696, 857
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.