Rh5AG312700
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003137
Physical Location & Seq
Forward (+)
45221510 .. 45224284
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG312700.1

Sequence Viewer

Length: 1008 bp
ATGTTATTGTTTGGCATGGTGGGTCTGATTGATACCGGTGTATTTGTAGCTAAATCTGTCATTCAATCGGAGAATGAGTGGTTCTTCTTTTCTCCGCGGGGTAGAAAGTACCCAAATGGTGCACAGAGCAGGAGGGCAACTGAATCTGGTTATTGGAAAGCCACAGGCAAAGAACGTAATGTAAAGTCAAGTTCTAATGTTATCGGTTCCAAGAGGACACTTGTGTTCCACATCGGACGTGCACCAAAAGGTGAAAGAACAGAATGGATTATGCACGAATACTGTATGCTGAATGATAAATCCCAGGATTCTATGGTTGTTTGCCGCCTTAAGAAGAACAGTGAGTTCCGTTTGAATGACACCACAAACCGAGGTTCCTCAAGTCAAAGTCCTTTATCAACTGTGCAGAATAGTGAAAATGCTATCTTTGAAGTTGGTATTGATCAAGGGGAGAAGGCAACTGAATGCCACTCAAAGAAATCTACTAGCAGTTATGATTCTCATTCTATTGAGCAAATTGATTCTGCATCTGACTCCTATCTGAAGCTGACACCAGAGGTAACACAGATGGAATCATCTCAGCACCAAAAGGGTTCTTATGATGATGACTTCTTTGCTGAGATACTTAAAGATGATATAATCAATCTAGACGAATCTTCAGTCTCCGTTGCTGCTGTCACCCCACCAGTGGTTGCAAATAATTCAGAAGCCCAACAACATTCGATGCAAGCTGTTGCGTCTCAAGCCATTCCTTTCCAAGGTACTGCAAATCGAAGAATCAGATTAAGAAGGCCAAAGTTAAAGTCTCGTGCACAGGCATTAACAGAAAGTACCAAGTCAGAGCAGTCACCAAAAGGTGTAGCAAATAATCATGTGTTGATATATGTAATTTTGGTTTTTTTGGTATTGCTCATTCTCTTTCTGTCAAATATTTGTTTTTCTAATATTTCTGGGTCTGTTTCTTTTTATGTTCGGAGGTTTCTGGCCAGTGAAAAACATCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

335

Amino Acids

37.43

Weight (kDa)

9.03

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 22 - 95 7.1e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 97
AciI CCGC 3 cut(s) 95, 97, 325
AcoI YGGCCR 1 cut(s) 984
AcuI CTGAAG 2 cut(s) 563, 642
AfaI GTAC 3 cut(s) 110, 763, 832
AfiI CCNNNNNNNGG 2 cut(s) 688, 758
AflII CTTAAG 1 cut(s) 329
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 3 cut(s) 65, 355, 431
AjiI CACGTC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 50, 547, 731
AluI AGCT 3 cut(s) 50, 547, 731
Alw21I GWGCWC 3 cut(s) 124, 244, 814
Alw26I GTCTC 3 cut(s) 667, 744, 810
Alw44I GTGCAC 3 cut(s) 120, 240, 810
AoxI GGCC 2 cut(s) 791, 984
ApaLI GTGCAC 3 cut(s) 120, 240, 810
ApeKI GCWGC 1 cut(s) 671
ArsI GACNNNNNNTTYG 4 cut(s) 645, 677, 788, 820
AsiGI ACCGGT 1 cut(s) 35
AsuHPI GGTGA 3 cut(s) 263, 670, 840
BaeGI GKGCMC 3 cut(s) 124, 244, 814
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BalI TGGCCA 1 cut(s) 986
BauI CACGAG 1 cut(s) 807
Bbv12I GWGCWC 3 cut(s) 124, 244, 814
BbvI GCAGC 1 cut(s) 658
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 667, 744, 810
BfaI CTAG 2 cut(s) 486, 647
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 2 cut(s) 325, 672
BlsI GCNGC 2 cut(s) 326, 673
Bme1390I CCNGG 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 208, 376
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 536, 714
BpuEI CTTGAG 2 cut(s) 364, 726
BsaJI CCNNGG 4 cut(s) 95, 303, 370, 757
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 2 cut(s) 688, 758
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 686, 987
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 4 cut(s) 95, 303, 370, 757
BseLI CCNNNNNNNGG 2 cut(s) 688, 758
BseMII CTCAG 2 cut(s) 593, 609
BseNI ACTGG 2 cut(s) 686, 987
BseSI GKGCMC 3 cut(s) 124, 244, 814
BseXI GCAGC 1 cut(s) 658
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 793, 986
BshTI ACCGGT 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 124, 244, 814
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 688, 758
BsmAI GTCTC 3 cut(s) 667, 744, 810
BsmBI CGTCTC 1 cut(s) 744
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 2 cut(s) 793, 986
Bsp1286I GDGCHC 3 cut(s) 124, 244, 814
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 3 cut(s) 95, 97, 325
BspANI GGCC 2 cut(s) 793, 986
BspCNI CTCAG 2 cut(s) 592, 610
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 208, 376
BspTI CTTAAG 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 686, 987
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 4 cut(s) 95, 303, 370, 757
BssMI GATC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 807
BssT1I CCWWGG 1 cut(s) 757
Bst2BI CACGAG 1 cut(s) 807
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 284, 341, 403
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 2 cut(s) 579, 618
BstDSI CCRYGG 1 cut(s) 95
BstENI CCTNNNNNAGG 1 cut(s) 756
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 3 cut(s) 667, 744, 810
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSLI GKGCMC 3 cut(s) 124, 244, 814
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 658
BsuRI GGCC 2 cut(s) 793, 986
BtgI CCRYGG 1 cut(s) 95
BtrI CACGTC 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 346, 693, 994
Cac8I GCNNGC 1 cut(s) 729
Cfr10I RCCGGY 1 cut(s) 35
Cfr42I CCGCGG 1 cut(s) 98
CseI GACGC 1 cut(s) 726
Csp6I GTAC 3 cut(s) 109, 762, 831
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 16, 872
CviJI RGCY 8 cut(s) 50, 161, 547, 710, 731, 746, 793, 986
CviKI_1 RGCY 8 cut(s) 50, 161, 547, 710, 731, 746, 793, 986
CviQI GTAC 3 cut(s) 109, 762, 831
DdeI CTNAG 2 cut(s) 579, 618
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 984
Eco130I CCWWGG 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 563, 642
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 757
ErhI CCWWGG 1 cut(s) 757
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 2 cut(s) 19, 875
FatI CATG 2 cut(s) 15, 871
FauI CCCGC 1 cut(s) 90
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 325, 672
Fsp4HI GCNGC 2 cut(s) 325, 672
FspBI CTAG 2 cut(s) 486, 647
GluI GCNGC 2 cut(s) 325, 672
HaeIII GGCC 2 cut(s) 793, 986
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 726
Hin1II CATG 2 cut(s) 19, 875
HinfI GANTC 8 cut(s) 143, 308, 497, 521, 533, 572, 653, 777
HpaII CCGG 1 cut(s) 36
HphI GGTGA 3 cut(s) 263, 670, 840
Hpy166II GTNNAC 3 cut(s) 122, 242, 812
Hpy188I TCNGA 9 cut(s) 27, 70, 236, 532, 543, 706, 782, 841, 975
Hpy188III TCNNGA 1 cut(s) 647
Hpy8I GTNNAC 3 cut(s) 122, 242, 812
HpyAV CCTTC 2 cut(s) 448, 783
HpyCH4III ACNGT 3 cut(s) 284, 341, 403
HpyCH4IV ACGT 2 cut(s) 175, 238
HpyCH4V TGCA 9 cut(s) 122, 242, 274, 406, 527, 695, 727, 767, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 2 cut(s) 579, 618
HpySE526I ACGT 2 cut(s) 175, 238
Hsp92II CATG 2 cut(s) 19, 875
Ksp22I TGATCA 1 cut(s) 442
KspI CCGCGG 1 cut(s) 98
Kzo9I GATC 1 cut(s) 442
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 2 cut(s) 536, 714
MaeI CTAG 2 cut(s) 486, 647
MaeII ACGT 2 cut(s) 175, 238
MaeIII GTNAC 3 cut(s) 559, 676, 846
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 4 cut(s) 76, 346, 648, 786
MhlI GDGCHC 3 cut(s) 124, 244, 814
MlsI TGGCCA 1 cut(s) 986
MluCI AATT 3 cut(s) 516, 700, 888
MluNI TGGCCA 1 cut(s) 986
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 6 cut(s) 126, 207, 365, 388, 550, 969
Mox20I TGGCCA 1 cut(s) 986
MscI TGGCCA 1 cut(s) 986
MseI TTAA 5 cut(s) 330, 627, 785, 800, 821
Msp20I TGGCCA 1 cut(s) 986
MspA1I CMGCKG 1 cut(s) 97
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 743
NdeII GATC 1 cut(s) 442
NlaIII CATG 2 cut(s) 19, 875
NlaIV GGNNCC 2 cut(s) 208, 376
NmuCI GTSAC 2 cut(s) 676, 846
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 7 cut(s) 143, 308, 497, 521, 572, 653, 777
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 326, 673
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 208, 376
RsaI GTAC 3 cut(s) 110, 763, 832
RsaNI GTAC 3 cut(s) 109, 762, 831
SacII CCGCGG 1 cut(s) 98
SaqAI TTAA 5 cut(s) 330, 627, 785, 800, 821
SatI GCNGC 2 cut(s) 325, 672
Sau3AI GATC 1 cut(s) 442
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 3 cut(s) 124, 244, 814
SfaNI GCATC 2 cut(s) 536, 714
Sfr303I CCGCGG 1 cut(s) 98
SgrBI CCGCGG 1 cut(s) 98
SmlI CTYRAG 3 cut(s) 329, 379, 741
SmoI CTYRAG 3 cut(s) 329, 379, 741
Sse9I AATT 3 cut(s) 516, 700, 888
SsiI CCGC 3 cut(s) 95, 97, 325
SspI AATATT 2 cut(s) 931, 946
SspMI CTAG 2 cut(s) 486, 647
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 3 cut(s) 284, 341, 403
TaiI ACGT 2 cut(s) 178, 241
TaqI TCGA 2 cut(s) 722, 772
TasI AATT 3 cut(s) 516, 700, 888
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 7 cut(s) 143, 308, 497, 521, 572, 653, 777
Tru1I TTAA 5 cut(s) 330, 627, 785, 800, 821
Tru9I TTAA 5 cut(s) 330, 627, 785, 800, 821
TscAI CASTG 3 cut(s) 346, 693, 994
TseFI GTSAC 2 cut(s) 676, 846
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 2 cut(s) 676, 846
TspGWI ACGGA 2 cut(s) 338, 655
TspRI CASTG 3 cut(s) 346, 693, 994
Vha464I CTTAAG 1 cut(s) 329
VneI GTGCAC 3 cut(s) 120, 240, 810
XagI CCTNNNNNAGG 1 cut(s) 756
XbaI TCTAGA 1 cut(s) 646
XspI CTAG 2 cut(s) 486, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.