Rmu_co8493309.1_g000001
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8493309.1
OG0003137
Physical Location & Seq
Reverse (-)
1 .. 2198
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8493309.1_g000001.1.cds

Sequence Viewer

Length: 745 bp
atggtgggtctgattgatactggtgtatttgtagctaaatctgtcattcaatcggagaatgagtggttcttcttttctccgcggggtagaaagtacccaaatggtgcacagagcaggagggcaactgaatctggttattggaaagccacaggcaaagaacgtaatgtaaagtcaagttctaatgttatcggttccaagaggacacttgtgttccacatcggacgtgcaccaaaaggtgaaagaacagaatggattatgcacgaatactgtatgctgaatgataaatcccaggattctatggttgtttgccgccttaagaagaacagtgagttccgtttgaatgacaccacaaaccgaggttcctcaagtcaaagtcctttatcaactgtgcagaatagtgaaaatgctatctttgaagttggtattgatcaaggggagaaggcaactgaatgccactcaaagaaatctactagcagttatgattctcattctattgagcaaattgattctgcatctgactcctatccgaagctgacaccagaggtaacacagatggaatcatctcagcaccaaaagtgttcttatgatgatgacttctttgctgagatacttaaagatgatataatcaatctagacgaatcttcagtctccgttgctgctgtcaccccaccagtggttgcaaataattcagaagcccaacaacattcgatgcaagctgttgcgtctcaagccattcctttccaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

248

Amino Acids

27.58

Weight (kDa)

5.73

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 80, 82, 310
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 673
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 3 cut(s) 50, 340, 416
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 3 cut(s) 35, 532, 716
AluI AGCT 3 cut(s) 35, 532, 716
Alw21I GWGCWC 2 cut(s) 109, 229
Alw26I GTCTC 2 cut(s) 652, 729
Alw44I GTGCAC 2 cut(s) 105, 225
ApaLI GTGCAC 2 cut(s) 105, 225
ApeKI GCWGC 1 cut(s) 656
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AsuHPI GGTGA 2 cut(s) 248, 655
BaeGI GKGCMC 2 cut(s) 109, 229
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
Bbv12I GWGCWC 2 cut(s) 109, 229
BbvI GCAGC 1 cut(s) 643
BccI CCATC 1 cut(s) 547
BciT130I CCWGG 1 cut(s) 290
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 2 cut(s) 652, 729
BfaI CTAG 2 cut(s) 471, 632
BfrI CTTAAG 1 cut(s) 314
BisI GCNGC 2 cut(s) 310, 657
BlsI GCNGC 2 cut(s) 311, 658
Bme1390I CCNGG 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 193, 361
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 2 cut(s) 521, 699
BpuEI CTTGAG 2 cut(s) 349, 711
BsaJI CCNNGG 3 cut(s) 80, 288, 355
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 2 cut(s) 25, 671
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 3 cut(s) 80, 288, 355
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 2 cut(s) 578, 594
BseNI ACTGG 2 cut(s) 25, 671
BseSI GKGCMC 2 cut(s) 109, 229
BseXI GCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 109, 229
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 2 cut(s) 652, 729
BsmBI CGTCTC 1 cut(s) 729
BsmI GAATGC 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 109, 229
Bsp143I GATC 1 cut(s) 427
BspACI CCGC 3 cut(s) 80, 82, 310
BspCNI CTCAG 2 cut(s) 577, 595
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 193, 361
BspTI CTTAAG 1 cut(s) 314
BsrI ACTGG 2 cut(s) 25, 671
BssECI CCNNGG 3 cut(s) 80, 288, 355
BssMI GATC 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 3 cut(s) 269, 326, 388
BstAFI CTTAAG 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 2 cut(s) 564, 603
BstDSI CCRYGG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 1 cut(s) 430
BstMAI GTCTC 2 cut(s) 652, 729
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BstSLI GKGCMC 2 cut(s) 109, 229
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 643
BtgI CCRYGG 1 cut(s) 80
BtrI CACGTC 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 331, 678
Cac8I GCNNGC 1 cut(s) 714
Cfr42I CCGCGG 1 cut(s) 83
CseI GACGC 1 cut(s) 711
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 6 cut(s) 35, 146, 532, 695, 716, 731
CviKI_1 RGCY 6 cut(s) 35, 146, 532, 695, 716, 731
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 564, 603
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 729
FaiI YATR 6 cut(s) 257, 272, 299, 480, 585, 623
FauI CCCGC 1 cut(s) 75
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 310, 657
Fsp4HI GCNGC 2 cut(s) 310, 657
FspBI CTAG 2 cut(s) 471, 632
GluI GCNGC 2 cut(s) 310, 657
HgaI GACGC 1 cut(s) 711
HinfI GANTC 7 cut(s) 128, 293, 482, 506, 518, 557, 638
HphI GGTGA 2 cut(s) 248, 655
Hpy166II GTNNAC 2 cut(s) 107, 227
Hpy188I TCNGA 6 cut(s) 12, 55, 221, 517, 528, 691
Hpy188III TCNNGA 1 cut(s) 632
Hpy8I GTNNAC 2 cut(s) 107, 227
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 3 cut(s) 269, 326, 388
HpyCH4IV ACGT 2 cut(s) 160, 223
HpyCH4V TGCA 7 cut(s) 107, 227, 259, 391, 512, 680, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 2 cut(s) 564, 603
HpySE526I ACGT 2 cut(s) 160, 223
Ksp22I TGATCA 1 cut(s) 427
KspI CCGCGG 1 cut(s) 83
Kzo9I GATC 1 cut(s) 427
LpnPI CCDG 8 cut(s) 6, 100, 117, 135, 275, 302, 552, 684
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 2 cut(s) 521, 699
MaeI CTAG 2 cut(s) 471, 632
MaeII ACGT 2 cut(s) 160, 223
MaeIII GTNAC 2 cut(s) 544, 661
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 3 cut(s) 61, 331, 633
MhlI GDGCHC 2 cut(s) 109, 229
MluCI AATT 2 cut(s) 501, 685
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 5 cut(s) 111, 192, 350, 373, 535
MseI TTAA 2 cut(s) 315, 612
MspA1I CMGCKG 1 cut(s) 82
MspCI CTTAAG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 728
NdeII GATC 1 cut(s) 427
NlaIV GGNNCC 2 cut(s) 193, 361
NmuCI GTSAC 1 cut(s) 661
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 6 cut(s) 128, 293, 482, 506, 557, 638
PkrI GCNGC 2 cut(s) 311, 658
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 193, 361
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SacII CCGCGG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 315, 612
SatI GCNGC 2 cut(s) 310, 657
Sau3AI GATC 1 cut(s) 427
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 2 cut(s) 109, 229
SetI ASST 8 cut(s) 37, 163, 226, 238, 361, 534, 546, 718
SfaNI GCATC 2 cut(s) 521, 699
Sfr303I CCGCGG 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 83
SmlI CTYRAG 3 cut(s) 314, 364, 726
SmoI CTYRAG 3 cut(s) 314, 364, 726
Sse9I AATT 2 cut(s) 501, 685
SsiI CCGC 3 cut(s) 80, 82, 310
SspMI CTAG 2 cut(s) 471, 632
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 269, 326, 388
TaiI ACGT 2 cut(s) 163, 226
TaqI TCGA 1 cut(s) 707
TasI AATT 2 cut(s) 501, 685
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 6 cut(s) 128, 293, 482, 506, 557, 638
Tru1I TTAA 2 cut(s) 315, 612
Tru9I TTAA 2 cut(s) 315, 612
TscAI CASTG 2 cut(s) 331, 678
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 1 cut(s) 656
Tsp45I GTSAC 1 cut(s) 661
TspGWI ACGGA 2 cut(s) 323, 640
TspRI CASTG 2 cut(s) 331, 678
Vha464I CTTAAG 1 cut(s) 314
VneI GTGCAC 2 cut(s) 105, 225
XbaI TCTAGA 1 cut(s) 631
XspI CTAG 2 cut(s) 471, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.