MD03G1150800.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0003137
Physical Location & Seq
Forward (+)
16932074 .. 16936457
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1150800.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGGGTGACGCTCAGTTTTCTCTAGCGGTCTTTTCGATGTTTCCGGGGTTTAGATTTTCACCGACCGACGAGGAATTGATTTCCTACTACCTTAAGAACAAGCTGGAGGGACCGCCACCCGGGAGGACGGTGGAGGTCATCTCCGAGGTTGATATCTGCAACTTCGAGCCCTGGGACTTGCCAGCTAAATCTATCATTCAATCGGACAATGAATGGTTCTTCTTTTCTCCACGAGGAAGAAAGTACCCAAATGGTTCACAAAGTAGGAGGGCGACAGAATTCGGTTATTGGAAAGCCACAGGAAAGGAACGTAACGTAAAGTCAGGTTCTAATGTTATTGGTACAAAGAGGACACTTGTGTTCCATGTAGGACGTGCACCAAAAGGGGAAAGGACAGAATGGATTATGCACGAGTACTGCATGAATGATAAATCCCAGGATTCTATGGTTGTTTGCCGCCTTCGGAAGAACAGTGAGTTTCATTTGAATGACACCACAAACCGAGGTTCTTCAGGTCAAGGTCCTTTATCAACTATGCACAAGGGTGAAAGTGCCGTCTCTGAAATTGGTAATGACCAAGGGGATAAGGCAGTTGAATGCTCTTCGAAAAAGTCTACTAGCAGTCATGATTCTCAGTCTATTGAGCAAATTGATTCTGCATCCGACTCCTACCAAAAACTTGTAACAGATGCTGTGCAGGCAGACTCTACTGGCCACCAGAAGGGTTCTTATGATGAAGACTTCTATGCGGAGATACTGAACGATGATATAATCAACATCAACCTAGATGAATCTTTTGTGCCTGCTGCCCGTATGATGCCAGTTGTTGCCAACAACTCAGAGGCTGAACATCAATCTCAACAACATATGCAAGCCACTTCGTTGCAAGCAGTTCCTTTCCAAGGTACTTCAAACCGAAGAATCTCTTTGAGAAAGAGAAAGGAAAAGTTTCGTGCAGAGTCACAGCCAAAAGCTTTAGTGAATAGGATGGACGATCGACATGCGTTGATATACGTACTTTTTGTTTTTCTGGTATTGCTGGCTGTGTTTGTATCCAATTTTTGTTTTCCTGACGTTGCTGGTTCTGTTTCTGCTGTCCTTGGAAAGATCCTGGCAAGTCAAAAACATCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

379

Amino Acids

42.36

Weight (kDa)

6.43

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 140 5.1e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 614
AciI CCGC 4 cut(s) 26, 113, 457, 749
AclWI GGATC 1 cut(s) 1102
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 5 cut(s) 245, 343, 416, 907, 1017
AfiI CCNNNNNNNGG 3 cut(s) 119, 721, 902
AflII CTTAAG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 1131
AgsI TTSAA 4 cut(s) 200, 487, 596, 912
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 3 cut(s) 170, 435, 1110
AleI CACNNNNGTG 1 cut(s) 543
AluBI AGCT 3 cut(s) 103, 185, 974
AluI AGCT 3 cut(s) 103, 185, 974
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 562
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 1 cut(s) 1102
AlwNI CAGNNNCTG 2 cut(s) 692, 845
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 712
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 948
AspS9I GGNCC 2 cut(s) 110, 521
AsuC2I CCSGG 3 cut(s) 45, 120, 121
AsuHPI GGTGA 3 cut(s) 17, 51, 557
AsuII TTCGAA 1 cut(s) 605
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 2 cut(s) 110, 521
BaeGI GKGCMC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 714
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 2 cut(s) 231, 410
BbsI GAAGAC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 793
BccI CCATC 1 cut(s) 982
BceAI ACGGC 1 cut(s) 539
BcgI CGANNNNNNTGC 2 cut(s) 983, 1017
BciT130I CCWGG 3 cut(s) 172, 437, 1112
BciVI GTATCC 1 cut(s) 1063
BcnI CCSGG 3 cut(s) 45, 120, 121
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 3 cut(s) 23, 618, 785
BfrI CTTAAG 1 cut(s) 92
BfuI GTATCC 1 cut(s) 1063
BisI GCNGC 2 cut(s) 457, 807
BlsI GCNGC 2 cut(s) 458, 808
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 6 cut(s) 45, 120, 121, 172, 437, 1112
Bme18I GGWCC 2 cut(s) 110, 521
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 110, 521
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 6 cut(s) 45, 120, 121, 172, 437, 1112
BmsI GCATC 3 cut(s) 668, 679, 807
BpiI GAAGAC 1 cut(s) 744
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 605
BpuMI CCSGG 3 cut(s) 45, 120, 121
BsaAI YACGTR 1 cut(s) 1015
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 721, 902
Bse1I ACTGG 2 cut(s) 715, 821
BseBI CCWGG 3 cut(s) 172, 437, 1112
BseGI GGATG 2 cut(s) 659, 993
BseLI CCNNNNNNNGG 3 cut(s) 119, 721, 902
BseMII CTCAG 3 cut(s) 26, 647, 852
BseNI ACTGG 2 cut(s) 715, 821
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 1 cut(s) 793
BsgI GTGCAG 2 cut(s) 716, 975
Bsh1285I CGRYCG 2 cut(s) 66, 997
BshFI GGCC 1 cut(s) 714
BsiEI CGRYCG 2 cut(s) 66, 997
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 44, 120
BslFI GGGAC 2 cut(s) 123, 188
BslI CCNNNNNNNGG 3 cut(s) 119, 721, 902
BsmAI GTCTC 1 cut(s) 562
BsmBI CGTCTC 1 cut(s) 562
BsmFI GGGAC 2 cut(s) 123, 188
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 1 cut(s) 714
BsoBI CYCGRG 1 cut(s) 119
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 171, 379
Bsp143I GATC 2 cut(s) 994, 1107
BspACI CCGC 4 cut(s) 26, 113, 457, 749
BspANI GGCC 1 cut(s) 714
BspCNI CTCAG 3 cut(s) 25, 646, 851
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 1102
BspQI GCTCTTC 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 605
BspTI CTTAAG 1 cut(s) 92
BsrI ACTGG 2 cut(s) 715, 821
BssMI GATC 2 cut(s) 994, 1107
BssSI CACGAG 2 cut(s) 231, 410
BssT1I CCWWGG 3 cut(s) 577, 901, 1099
Bst2BI CACGAG 2 cut(s) 231, 410
Bst2UI CCWGG 3 cut(s) 172, 437, 1112
Bst4CI ACNGT 2 cut(s) 130, 473
Bst6I CTCTTC 1 cut(s) 607
BstAFI CTTAAG 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 1015
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 6 cut(s) 183, 699, 804, 873, 888, 1041
BstDEI CTNAG 3 cut(s) 12, 633, 838
BstENI CCTNNNNNAGG 1 cut(s) 900
BstF5I GGATG 2 cut(s) 659, 993
BstKTI GATC 2 cut(s) 997, 1110
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 2 cut(s) 994, 1107
BstMCI CGRYCG 2 cut(s) 66, 997
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 3 cut(s) 172, 437, 1112
BstNSI RCATGY 2 cut(s) 1004, 1135
BstSCI CCNGG 6 cut(s) 43, 118, 119, 170, 435, 1110
BstSLI GKGCMC 1 cut(s) 379
BstSNI TACGTA 1 cut(s) 1015
BstV1I GCAGC 1 cut(s) 793
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 1 cut(s) 1107
BstYI RGATCY 1 cut(s) 1107
BsuI GTATCC 1 cut(s) 1063
BsuRI GGCC 1 cut(s) 714
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 659, 993
BtsIMutI CAGTG 1 cut(s) 478
Cac8I GCNNGC 6 cut(s) 183, 699, 804, 873, 888, 1041
CaiI CAGNNNCTG 2 cut(s) 692, 845
CciI TCATGA 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 110, 521
Cfr9I CCCGGG 1 cut(s) 119
CseI GACGC 1 cut(s) 17
Csp6I GTAC 5 cut(s) 244, 342, 415, 906, 1016
CviAII CATG 5 cut(s) 365, 421, 626, 1001, 1132
CviQI GTAC 5 cut(s) 244, 342, 415, 906, 1016
DdeI CTNAG 3 cut(s) 12, 633, 838
DpnI GATC 2 cut(s) 996, 1109
DpnII GATC 2 cut(s) 994, 1107
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 607
EarI CTCTTC 1 cut(s) 607
Eco105I TACGTA 1 cut(s) 1015
Eco130I CCWWGG 3 cut(s) 577, 901, 1099
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 110, 521
Eco57I CTGAAG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 119
EcoNI CCTNNNNNAGG 1 cut(s) 900
EcoO109I RGGNCCY 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 3 cut(s) 170, 435, 1110
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 3 cut(s) 577, 901, 1099
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 3 cut(s) 577, 901, 1099
Esp3I CGTCTC 1 cut(s) 562
FaeI CATG 5 cut(s) 368, 424, 629, 1004, 1135
FalI AAGNNNNNCTT 2 cut(s) 910, 942
FaqI GGGAC 2 cut(s) 123, 188
FatI CATG 5 cut(s) 364, 420, 625, 1000, 1131
FauNDI CATATG 1 cut(s) 867
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 2 cut(s) 457, 807
FokI GGATG 2 cut(s) 646, 1000
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 457, 807
FspBI CTAG 3 cut(s) 23, 618, 785
GluI GCNGC 2 cut(s) 457, 807
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 714
HapII CCGG 2 cut(s) 44, 120
HgaI GACGC 1 cut(s) 17
Hin1II CATG 5 cut(s) 368, 424, 629, 1004, 1135
HindIII AAGCTT 1 cut(s) 972
HinfI GANTC 8 cut(s) 440, 629, 653, 665, 704, 791, 921, 959
HpaII CCGG 2 cut(s) 44, 120
HphI GGTGA 3 cut(s) 17, 51, 557
Hpy166II GTNNAC 3 cut(s) 257, 377, 615
Hpy188I TCNGA 6 cut(s) 145, 205, 465, 562, 664, 841
Hpy188III TCNNGA 2 cut(s) 626, 1070
Hpy8I GTNNAC 3 cut(s) 257, 377, 615
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 470, 715
HpyCH4III ACNGT 2 cut(s) 130, 473
HpyCH4IV ACGT 5 cut(s) 310, 315, 373, 1014, 1074
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 3 cut(s) 12, 633, 838
HpySE526I ACGT 5 cut(s) 310, 315, 373, 1014, 1074
Hsp92II CATG 5 cut(s) 368, 424, 629, 1004, 1135
Kzo9I GATC 2 cut(s) 994, 1107
LguI GCTCTTC 1 cut(s) 607
Lsp1109I GCAGC 1 cut(s) 793
LweI GCATC 3 cut(s) 668, 679, 807
MaeI CTAG 3 cut(s) 23, 618, 785
MaeII ACGT 5 cut(s) 310, 315, 373, 1014, 1074
MaeIII GTNAC 4 cut(s) 5, 311, 682, 960
MalI GATC 2 cut(s) 996, 1109
MboI GATC 2 cut(s) 994, 1107
MboII GAAGA 7 cut(s) 211, 249, 478, 501, 594, 749, 930
MflI RGATCY 1 cut(s) 1107
MhlI GDGCHC 2 cut(s) 171, 379
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 5 cut(s) 74, 278, 564, 648, 1057
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 3 cut(s) 659, 698, 968
MmeI TCCRAC 1 cut(s) 687
Mox20I TGGCCA 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 714
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 2 cut(s) 486, 543
Msp20I TGGCCA 1 cut(s) 714
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 2 cut(s) 44, 120
MspR9I CCNGG 6 cut(s) 45, 120, 121, 172, 437, 1112
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 3 cut(s) 172, 437, 1112
MwoI GCNNNNNNNGC 1 cut(s) 698
NciI CCSGG 3 cut(s) 45, 120, 121
NdeI CATATG 1 cut(s) 867
NdeII GATC 2 cut(s) 994, 1107
NlaIII CATG 5 cut(s) 368, 424, 629, 1004, 1135
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 2 cut(s) 5, 960
NspI RCATGY 2 cut(s) 1004, 1135
NspV TTCGAA 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 543
PagI TCATGA 1 cut(s) 625
PasI CCCWGGG 1 cut(s) 171
PciI ACATGT 1 cut(s) 1131
PciSI GCTCTTC 1 cut(s) 607
PctI GAATGC 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 5 cut(s) 440, 629, 653, 791, 921
PkrI GCNGC 2 cut(s) 458, 808
Ple19I CGATCG 1 cut(s) 997
PleI GAGTC 3 cut(s) 659, 698, 967
PpsI GAGTC 3 cut(s) 659, 698, 967
Ppu21I YACGTR 1 cut(s) 1015
PpuMI RGGWCCY 1 cut(s) 521
PscI ACATGT 1 cut(s) 1131
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 3 cut(s) 170, 435, 1110
PspGI CCWGG 3 cut(s) 170, 435, 1110
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 2 cut(s) 110, 521
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 2 cut(s) 692, 845
PsuI RGATCY 1 cut(s) 1107
PvuI CGATCG 1 cut(s) 997
RsaI GTAC 5 cut(s) 245, 343, 416, 907, 1017
RsaNI GTAC 5 cut(s) 244, 342, 415, 906, 1016
RseI CAYNNNNRTG 2 cut(s) 486, 543
SapI GCTCTTC 1 cut(s) 607
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 457, 807
Sau3AI GATC 2 cut(s) 994, 1107
Sau96I GGNCC 2 cut(s) 110, 521
ScaI AGTACT 1 cut(s) 416
SchI GAGTC 3 cut(s) 659, 698, 968
ScrFI CCNGG 6 cut(s) 45, 120, 121, 172, 437, 1112
SduI GDGCHC 2 cut(s) 171, 379
SfaNI GCATC 3 cut(s) 668, 679, 807
SfuI TTCGAA 1 cut(s) 605
SinI GGWCC 2 cut(s) 110, 521
SmaI CCCGGG 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 486, 543
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SnaBI TACGTA 1 cut(s) 1015
Sse9I AATT 5 cut(s) 74, 278, 564, 648, 1057
SsiI CCGC 4 cut(s) 26, 113, 457, 749
SspMI CTAG 3 cut(s) 23, 618, 785
StyD4I CCNGG 6 cut(s) 43, 118, 119, 170, 435, 1110
StyI CCWWGG 3 cut(s) 577, 901, 1099
TaaI ACNGT 2 cut(s) 130, 473
TaiI ACGT 5 cut(s) 313, 318, 376, 1017, 1077
TaqI TCGA 4 cut(s) 35, 165, 605, 997
TaqII GACCGA 1 cut(s) 80
TasI AATT 5 cut(s) 74, 278, 564, 648, 1057
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 5 cut(s) 440, 629, 653, 791, 921
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 2 cut(s) 5, 960
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 2 cut(s) 5, 960
TspDTI ATGAA 5 cut(s) 225, 437, 470, 750, 804
TspMI CCCGGG 1 cut(s) 119
TspRI CASTG 1 cut(s) 478
Vha464I CTTAAG 1 cut(s) 92
VneI GTGCAC 1 cut(s) 375
VpaK11BI GGWCC 2 cut(s) 110, 521
XagI CCTNNNNNAGG 1 cut(s) 900
XapI RAATTY 1 cut(s) 278
XceI RCATGY 2 cut(s) 1004, 1135
XmaI CCCGGG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 3 cut(s) 23, 618, 785
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.