RLG00000034462
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003137
Physical Location & Seq
Forward (+)
43097098 .. 43100034
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034462

Sequence Viewer

Length: 1062 bp
ATGAGTGAGATTTCCAAGGAGGCTCAGCTTTCCATCGCTGCCTCTTCGATGTTTCCGGGGTTTAGGTTCTCACCGACCGACGAGGAATTGATTTCGCACTACCTTAAGAACAAGTTGGAGTCCCCTGAGAAGAGCGTGGAGGTCATTTCCGAAGTTGATATCTGCAACTTCGAGCCCTGGGACCTACCGGCTAAATCTGTCATTCAATCGGAGAATGAGTGGTTCTTCTTTTCTCCGCGGGGTAGAAAGTACCCAAATGGTTCACAGAGCAGGAGGGCAACTGAATTTGGTTATTGGAAAGCCACAGGCAAAGAACGTAATGTAAAGTCAAGTTCTAATGTTATCGGTACCAAGAGGACACTTGTGTTCCACATTGGACGTGCACCAAAAGGTGAAAGAACAGAATGGATTATGCACGAATACTGTATGCTGAATGATAAATCCCAGGATTCTATGGTTGTTTGCCGCCTTAGGAAGAACAGTGAGTTCCGTCTGAATGACACCACAAACCGAGGTTCCTCAAGTCAAAGTCCTTTATCAACTGTGCAGAATAGTGAAAATGCTATCTTCGAAGTTGGTATTGATCAAGGGGAGAAGGCAACTGAATGCCACTCAAAGAAATCTACTAGCAGTTATGATTCTCATTCTACTGAGCAAATTGATTCTGCATCTGACTCCTATCCGAAGCTGACACCAGAGGTAACACAGATGGAATCATCTCAGCACCAAAAGAGTTCTTATGATGATGACTTCTTCGCTGAGATACTTAAAGATGATATAATCAATCTAGACGAATCTTCAGTCCCTGTTGCTGCTGACATCCCACCAGTGGTTGCAAATAATTCAGAAGCCCAACAACATTCGATGCAAGCCGCTGCGTCTCAAGCCATTCCTTTCCAAGGTACTGCAAATCGAAGAATCAGATTAAGAAGGCCAAAGTTAAAGTCTCGTGCACAAGCATTAACGGAGCATACCAAGTCAGAGCAGTCACCTAAAGGTTTCTGGCGGGTGAAAAACATCATAAATGACTGGATTAAGTCTGTAAAGTTTTTCGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

354

Amino Acids

39.97

Weight (kDa)

6.48

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 142 3.8e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 238
AciI CCGC 5 cut(s) 236, 238, 466, 873, 1006
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 3 cut(s) 251, 349, 904
AfiI CCNNNNNNNGG 2 cut(s) 829, 899
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 206
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 2 cut(s) 176, 444
AluBI AGCT 2 cut(s) 28, 688
AluI AGCT 2 cut(s) 28, 688
Alw21I GWGCWC 2 cut(s) 385, 955
Alw26I GTCTC 2 cut(s) 885, 951
Alw44I GTGCAC 2 cut(s) 381, 951
AlwNI CAGNNNCTG 1 cut(s) 806
AoxI GGCC 1 cut(s) 932
ApaLI GTGCAC 2 cut(s) 381, 951
ApeKI GCWGC 3 cut(s) 38, 812, 875
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 4 cut(s) 786, 818, 929, 961
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 4 cut(s) 63, 404, 981, 1021
AsuII TTCGAA 1 cut(s) 570
AvaII GGWCC 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 470
BaeGI GKGCMC 2 cut(s) 385, 955
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 948
Bbv12I GWGCWC 2 cut(s) 385, 955
BbvI GCAGC 3 cut(s) 25, 799, 862
BccI CCATC 2 cut(s) 41, 703
BciT130I CCWGG 2 cut(s) 178, 446
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 885, 951
BfaI CTAG 2 cut(s) 627, 788
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 5 cut(s) 39, 466, 813, 873, 876
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 5 cut(s) 40, 467, 814, 874, 877
Bme1390I CCNGG 3 cut(s) 57, 178, 446
Bme18I GGWCC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 182, 349, 517
BmrFI CCNGG 3 cut(s) 57, 178, 446
BmsI GCATC 2 cut(s) 677, 855
Bpu1102I GCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 505, 867
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 8 cut(s) 15, 56, 176, 177, 236, 444, 511, 898
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 829, 899
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 827, 1034
Bse21I CCTNAGG 1 cut(s) 470
BseBI CCWGG 2 cut(s) 178, 446
BseDI CCNNGG 8 cut(s) 15, 56, 176, 177, 236, 444, 511, 898
BseGI GGATG 1 cut(s) 819
BseLI CCNNNNNNNGG 2 cut(s) 829, 899
BseMII CTCAG 5 cut(s) 38, 117, 642, 734, 750
BseNI ACTGG 2 cut(s) 827, 1034
BseSI GKGCMC 2 cut(s) 385, 955
BseXI GCAGC 3 cut(s) 25, 799, 862
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 934
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 385, 955
BsiSI CCGG 2 cut(s) 56, 188
BslFI GGGAC 3 cut(s) 106, 194, 788
BslI CCNNNNNNNGG 2 cut(s) 829, 899
BsmAI GTCTC 2 cut(s) 885, 951
BsmBI CGTCTC 1 cut(s) 885
BsmFI GGGAC 3 cut(s) 106, 194, 788
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 1 cut(s) 934
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 177, 385, 955
Bsp143I GATC 1 cut(s) 583
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 5 cut(s) 236, 238, 466, 873, 1006
BspANI GGCC 1 cut(s) 934
BspCNI CTCAG 5 cut(s) 37, 118, 643, 733, 751
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 182, 349, 517
BspQI GCTCTTC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 570
BspT107I GGYRCC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 2 cut(s) 827, 1034
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 8 cut(s) 15, 56, 176, 177, 236, 444, 511, 898
BssMI GATC 1 cut(s) 583
BssSI CACGAG 1 cut(s) 948
BssT1I CCWWGG 2 cut(s) 15, 898
Bst2BI CACGAG 1 cut(s) 948
Bst2UI CCWGG 2 cut(s) 178, 446
Bst4CI ACNGT 3 cut(s) 425, 482, 544
Bst6I CTCTTC 2 cut(s) 49, 125
BstAFI CTTAAG 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 870
BstDEI CTNAG 6 cut(s) 24, 126, 470, 651, 720, 759
BstDSI CCRYGG 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 897
BstF5I GGATG 1 cut(s) 819
BstFNI CGCG 1 cut(s) 238
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 2 cut(s) 885, 951
BstMBI GATC 1 cut(s) 583
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 884
BstNI CCWGG 2 cut(s) 178, 446
BstSCI CCNGG 3 cut(s) 55, 176, 444
BstSLI GKGCMC 2 cut(s) 385, 955
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 3 cut(s) 25, 799, 862
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 1 cut(s) 934
BtgI CCRYGG 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 380
BtsCI GGATG 1 cut(s) 819
BtsIMutI CAGTG 2 cut(s) 487, 834
Cac8I GCNNGC 1 cut(s) 870
CaiI CAGNNNCTG 1 cut(s) 806
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 181
Cfr42I CCGCGG 1 cut(s) 239
CseI GACGC 1 cut(s) 867
Csp6I GTAC 3 cut(s) 250, 348, 903
CviQI GTAC 3 cut(s) 250, 348, 903
DdeI CTNAG 6 cut(s) 24, 126, 470, 651, 720, 759
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 49, 125
EarI CTCTTC 2 cut(s) 49, 125
Eco130I CCWWGG 2 cut(s) 15, 898
Eco24I GRGCYC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 783
Eco81I CCTNAGG 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 176, 444
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 15, 898
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 15, 898
Esp3I CGTCTC 1 cut(s) 885
FaiI YATR 9 cut(s) 413, 428, 455, 636, 741, 779, 972, 1022, 1060
FaqI GGGAC 3 cut(s) 106, 194, 788
FauI CCCGC 2 cut(s) 231, 999
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 39, 466, 813, 873, 876
FokI GGATG 1 cut(s) 806
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 5 cut(s) 39, 466, 813, 873, 876
FspBI CTAG 2 cut(s) 627, 788
GluI GCNGC 5 cut(s) 39, 466, 813, 873, 876
HaeIII GGCC 1 cut(s) 934
HapII CCGG 2 cut(s) 56, 188
HgaI GACGC 1 cut(s) 867
HinfI GANTC 8 cut(s) 119, 449, 638, 662, 674, 713, 794, 918
HpaII CCGG 2 cut(s) 56, 188
HphI GGTGA 4 cut(s) 63, 404, 981, 1021
Hpy166II GTNNAC 3 cut(s) 263, 383, 953
Hpy188I TCNGA 8 cut(s) 151, 211, 495, 673, 684, 847, 923, 982
Hpy188III TCNNGA 1 cut(s) 788
Hpy8I GTNNAC 3 cut(s) 263, 383, 953
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 589, 924
HpyCH4III ACNGT 3 cut(s) 425, 482, 544
HpyCH4IV ACGT 2 cut(s) 316, 379
HpyCH4V TGCA 9 cut(s) 165, 383, 415, 547, 668, 836, 868, 908, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 884
HpyF3I CTNAG 6 cut(s) 24, 126, 470, 651, 720, 759
HpySE526I ACGT 2 cut(s) 316, 379
KpnI GGTACC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 583
KspI CCGCGG 1 cut(s) 239
Kzo9I GATC 1 cut(s) 583
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 967
Lsp1109I GCAGC 3 cut(s) 25, 799, 862
LweI GCATC 2 cut(s) 677, 855
MaeI CTAG 2 cut(s) 627, 788
MaeII ACGT 2 cut(s) 316, 379
MaeIII GTNAC 2 cut(s) 700, 987
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 8 cut(s) 36, 142, 217, 487, 559, 745, 789, 927
MhlI GDGCHC 3 cut(s) 177, 385, 955
MluCI AATT 4 cut(s) 86, 284, 657, 841
MlyI GAGTC 2 cut(s) 128, 668
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 9 cut(s) 13, 52, 76, 133, 267, 348, 506, 529, 691
MseI TTAA 6 cut(s) 105, 768, 926, 941, 962, 1035
MspA1I CMGCKG 2 cut(s) 238, 875
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 2 cut(s) 56, 188
MspR9I CCNGG 3 cut(s) 57, 178, 446
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 2 cut(s) 178, 446
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 884
NciI CCSGG 1 cut(s) 57
NdeII GATC 1 cut(s) 583
NlaIV GGNNCC 3 cut(s) 182, 349, 517
NmuCI GTSAC 1 cut(s) 987
NspV TTCGAA 1 cut(s) 570
PasI CCCWGGG 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 125
PctI GAATGC 1 cut(s) 611
PfeI GAWTC 6 cut(s) 449, 638, 662, 713, 794, 918
PkrI GCNGC 5 cut(s) 40, 467, 814, 874, 877
PleI GAGTC 2 cut(s) 127, 668
PpsI GAGTC 2 cut(s) 127, 668
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 176, 444
PspGI CCWGG 2 cut(s) 176, 444
PspN4I GGNNCC 3 cut(s) 182, 349, 517
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 3 cut(s) 251, 349, 904
RsaNI GTAC 3 cut(s) 250, 348, 903
SacII CCGCGG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 6 cut(s) 105, 768, 926, 941, 962, 1035
SatI GCNGC 5 cut(s) 39, 466, 813, 873, 876
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 2 cut(s) 128, 668
ScrFI CCNGG 3 cut(s) 57, 178, 446
SduI GDGCHC 3 cut(s) 177, 385, 955
SfaNI GCATC 2 cut(s) 677, 855
Sfr303I CCGCGG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 239
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 3 cut(s) 104, 520, 882
SmoI CTYRAG 3 cut(s) 104, 520, 882
Sse9I AATT 4 cut(s) 86, 284, 657, 841
SsiI CCGC 5 cut(s) 236, 238, 466, 873, 1006
SspMI CTAG 2 cut(s) 627, 788
StyD4I CCNGG 3 cut(s) 55, 176, 444
StyI CCWWGG 2 cut(s) 15, 898
TaaI ACNGT 3 cut(s) 425, 482, 544
TaiI ACGT 2 cut(s) 319, 382
TaqI TCGA 6 cut(s) 47, 171, 570, 863, 913, 1053
TaqII GACCGA 1 cut(s) 92
TasI AATT 4 cut(s) 86, 284, 657, 841
TauI GCSGC 2 cut(s) 468, 875
TfiI GAWTC 6 cut(s) 449, 638, 662, 713, 794, 918
Tru1I TTAA 6 cut(s) 105, 768, 926, 941, 962, 1035
Tru9I TTAA 6 cut(s) 105, 768, 926, 941, 962, 1035
TscAI CASTG 2 cut(s) 487, 834
TseFI GTSAC 1 cut(s) 987
TseI GCWGC 3 cut(s) 38, 812, 875
Tsp45I GTSAC 1 cut(s) 987
TspGWI ACGGA 2 cut(s) 479, 980
TspRI CASTG 2 cut(s) 487, 834
Vha464I CTTAAG 1 cut(s) 104
VneI GTGCAC 2 cut(s) 381, 951
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 897
XapI RAATTY 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 787
XspI CTAG 2 cut(s) 627, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.