FvH4_3g25830
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003137
Physical Location & Seq
Reverse (-)
18677666 .. 18682108
4443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25830.t2

Sequence Viewer

Length: 813 bp
ATGGGTGGGATTTCCAAGGAGGCTCAGCTGTCCATCGCCGCCTCTTCGATGTTTCCGGGGTTTAGATTCTCACCGACAGACGAGGAGTTGATTTCGTACTACCTTAAGAATAAGTTGGAGTCCCCCGAGAAGAGCGTCGAGGTTATTTCTGAGGTTGATATCTGCAACTTCGAGCCATGGGACTTACCAGCTAAGTCTGTCATTCAATCAGAGAATGAGTGGTTCTTCTTTTCTCCACGGGGCAAAAAGTATCCAAATGGTTCACAGAGCAGAAGAGCAACTGAATCTGGTTATTGGAAAGCCACAGGCAAAGAGCGTAATGTAAAGTCAAGTTCTAATGTTATCGGTACCAAGAGGACACTTGTGTTCCACATCGGACGTGCACCGAAAGGTGAAAGGACTGAATGGATTATGCATGAATATTGCATGCTGAATGATAAATCACAGGATTCTATTGTTGTTTGCCGTCTCAGGAAGAACAGTGAGTTCCGTCTGAATGACACCACAAACCGAGGTTCCTCAAGTCAAAGTCCTTTATCAGCTCAGCATAATAGTGAAAATGTTGTATCCGAAATTGGTACTGATCAAGGGGAGAAGGCAATTGACTGCAACTCGAAGAAATCTACTAGCAGTTATGATTCTCATTCTATTGAGCAAATGGATTCTGCATCAGATTCGTATCAAAAACTAACACCGGAAGTGACACAAATGGAATCATCTGAGCACCAAAAGAAGCCCAACAAGAGTCGATGCAAGCCGTTGTTTCTCAGGCCATTCCATTTCAAGGTACTGCAAATCGAAGAATCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

271

Amino Acids

30.63

Weight (kDa)

7.02

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 131 - 254 2.9e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AciI CCGC 1 cut(s) 39
AfaI GTAC 4 cut(s) 98, 349, 580, 789
AfiI CCNNNNNNNGG 1 cut(s) 784
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 206, 784
AjiI CACGTC 1 cut(s) 380
AluBI AGCT 3 cut(s) 28, 191, 542
AluI AGCT 3 cut(s) 28, 191, 542
Alw21I GWGCWC 2 cut(s) 385, 726
Alw26I GTCTC 1 cut(s) 473
Alw44I GTGCAC 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 770
ApaLI GTGCAC 1 cut(s) 381
Asp718I GGTACC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 63, 404
AvaI CYCGRG 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 347
Bbv12I GWGCWC 2 cut(s) 385, 726
BccI CCATC 1 cut(s) 41
BceAI ACGGC 2 cut(s) 450, 742
BcgI CGANNNNNNTGC 2 cut(s) 657, 691
BciVI GTATCC 2 cut(s) 261, 577
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 627
BfrI CTTAAG 1 cut(s) 104
BfuI GTATCC 2 cut(s) 261, 577
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 2 cut(s) 24, 543
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 380
BmiI GGNNCC 2 cut(s) 349, 517
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 677, 740
Bpu1102I GCTNAGC 2 cut(s) 24, 543
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 5 cut(s) 15, 56, 176, 236, 511
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse8I GATNNNNATC 1 cut(s) 678
BseDI CCNNGG 5 cut(s) 15, 56, 176, 236, 511
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMII CTCAG 6 cut(s) 38, 141, 484, 557, 711, 781
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 385
BshFI GGCC 1 cut(s) 772
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 2 cut(s) 385, 726
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 2 cut(s) 56, 695
BslFI GGGAC 2 cut(s) 106, 194
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 1 cut(s) 473
BsmBI CGTCTC 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 106, 194
BsnI GGCC 1 cut(s) 772
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 385, 726
Bsp143I GATC 1 cut(s) 583
Bsp1720I GCTNAGC 2 cut(s) 24, 543
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 772
BspCNI CTCAG 6 cut(s) 37, 142, 483, 556, 712, 780
BspLI GGNNCC 2 cut(s) 349, 517
BspQI GCTCTTC 2 cut(s) 125, 268
BspT107I GGYRCC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 104
BssECI CCNNGG 5 cut(s) 15, 56, 176, 236, 511
BssMI GATC 1 cut(s) 583
BssT1I CCWWGG 2 cut(s) 15, 176
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 3 cut(s) 49, 125, 268
BstAFI CTTAAG 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 428, 755
BstDEI CTNAG 7 cut(s) 24, 150, 192, 470, 543, 720, 767
BstDSI CCRYGG 2 cut(s) 176, 236
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 1 cut(s) 583
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 385
BsuI GTATCC 2 cut(s) 261, 577
BsuRI GGCC 1 cut(s) 772
BtgI CCRYGG 2 cut(s) 176, 236
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 428, 755
CseI GACGC 1 cut(s) 124
Csp6I GTAC 4 cut(s) 97, 348, 579, 788
CviAII CATG 3 cut(s) 177, 416, 427
CviJI RGCY 9 cut(s) 23, 28, 175, 191, 302, 542, 736, 757, 772
CviKI_1 RGCY 9 cut(s) 23, 28, 175, 191, 302, 542, 736, 757, 772
CviQI GTAC 4 cut(s) 97, 348, 579, 788
DdeI CTNAG 7 cut(s) 24, 150, 192, 470, 543, 720, 767
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
Eam1104I CTCTTC 3 cut(s) 49, 125, 268
EarI CTCTTC 3 cut(s) 49, 125, 268
Eco130I CCWWGG 2 cut(s) 15, 176
Eco32I GATATC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 125
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 15, 176
EcoT22I ATGCAT 1 cut(s) 417
ErhI CCWWGG 2 cut(s) 15, 176
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 3 cut(s) 180, 419, 430
FaiI YATR 6 cut(s) 178, 413, 417, 428, 549, 636
FaqI GGGAC 2 cut(s) 106, 194
FatI CATG 3 cut(s) 176, 415, 426
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 627
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 772
HapII CCGG 2 cut(s) 56, 695
HgaI GACGC 1 cut(s) 124
Hin1II CATG 3 cut(s) 180, 419, 430
HpaII CCGG 2 cut(s) 56, 695
HphI GGTGA 2 cut(s) 63, 404
Hpy166II GTNNAC 2 cut(s) 263, 383
Hpy188I TCNGA 8 cut(s) 151, 211, 377, 495, 571, 673, 721, 808
Hpy188III TCNNGA 1 cut(s) 472
Hpy8I GTNNAC 2 cut(s) 263, 383
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 8 cut(s) 165, 383, 415, 426, 609, 668, 753, 793
HpyF3I CTNAG 7 cut(s) 24, 150, 192, 470, 543, 720, 767
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 3 cut(s) 180, 419, 430
KpnI GGTACC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 1 cut(s) 583
LguI GCTCTTC 2 cut(s) 125, 268
LpnPI CCDG 8 cut(s) 69, 201, 273, 291, 431, 457, 708, 754
LweI GCATC 2 cut(s) 677, 740
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 700
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 7 cut(s) 36, 142, 217, 285, 487, 628, 812
MfeI CAATTG 1 cut(s) 600
MhlI GDGCHC 2 cut(s) 385, 726
MluCI AATT 2 cut(s) 573, 600
MlyI GAGTC 2 cut(s) 128, 754
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 8 cut(s) 13, 52, 76, 133, 145, 348, 506, 529
Mph1103I ATGCAT 1 cut(s) 417
MseI TTAA 2 cut(s) 105, 811
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 28
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 2 cut(s) 56, 695
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 1 cut(s) 600
NciI CCSGG 1 cut(s) 57
NcoI CCATGG 1 cut(s) 176
NdeII GATC 1 cut(s) 583
NlaIII CATG 3 cut(s) 180, 419, 430
NlaIV GGNNCC 2 cut(s) 349, 517
NmuCI GTSAC 1 cut(s) 700
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 430
PaeI GCATGC 1 cut(s) 430
PciSI GCTCTTC 2 cut(s) 125, 268
PfeI GAWTC 8 cut(s) 66, 284, 449, 638, 662, 674, 713, 803
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 2 cut(s) 127, 753
PpsI GAGTC 2 cut(s) 127, 753
PspN4I GGNNCC 2 cut(s) 349, 517
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 4 cut(s) 98, 349, 580, 789
RsaNI GTAC 4 cut(s) 97, 348, 579, 788
RseI CAYNNNNRTG 1 cut(s) 552
SapI GCTCTTC 2 cut(s) 125, 268
SaqAI TTAA 2 cut(s) 105, 811
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 583
SchI GAGTC 2 cut(s) 128, 754
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 385, 726
SfaNI GCATC 2 cut(s) 677, 740
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 104, 520
SmoI CTYRAG 2 cut(s) 104, 520
SphI GCATGC 1 cut(s) 430
Sse9I AATT 2 cut(s) 573, 600
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 422
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 2 cut(s) 15, 176
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 382
TaqI TCGA 6 cut(s) 47, 138, 171, 614, 748, 798
TasI AATT 2 cut(s) 573, 600
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 8 cut(s) 66, 284, 449, 638, 662, 674, 713, 803
Tru1I TTAA 2 cut(s) 105, 811
Tru9I TTAA 2 cut(s) 105, 811
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 700
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 1 cut(s) 487
Vha464I CTTAAG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 381
XceI RCATGY 1 cut(s) 430
XspI CTAG 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.