Rh5DG332900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003137
Physical Location & Seq
Forward (+)
43972890 .. 43976461
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG332900.1

Sequence Viewer

Length: 756 bp
ATGTTTCCTGGTTCTGGTCATTTATTCCTTTACGTATCTGCCTGCCTGTATTTGCAGGATTCTATGGTTGTTTGCCGCCTTAGGAAGAACAGTGACTTCCGTCTGAATGACACCACAAACCGAGGTTCCTCAAGTCAAAGTCCTTTATCAACTGTGCAGAATAGTGAAAATGCTATCTTTGAAGTTGGTATTGATCAAGGGGAGAAGGCAACTGAATGCCACTCAAAGAAATCTACTAGCAGTTATGATTCTCATTCTATTGAGCAAATTGATTCTGCATCTGACTCCTATCCGAAGCTGACACCAGAGGTAACACAGATGGAATCATCTCAGCACCAGGGTTCTTATGATGATGACTTCTTTGCTGAGATACTTAAAGATGATATAATAAATCTAGACGAATCTTCAGTCTCCGTTGCTGCTGGCACCCCACCAGTGGTTGCAAATAATTCAGAAGCCCAACAACATTCGATGCAAGCTGTTGGGTCTCAAGCCATTCCTTCCCAAGGTACTGCAAATCGAAGAATCAGATTAAGAAGGCCAAAGTTAAAGTCTCGTGCACAGGCATTAACAGAACGTACCAAGTCAGAGCAGTCACCAAAAGGTTTAGCAAATAATCATGTGTTGATATATGTAATTTTGGTTTTTTTGGTATTGCTCATTCTGTTTCTGTCAAATTTTTGTTTTTCTAATATTTCTGGGTCTGTTTCTTTTTATGTTCGGAGGTTTCTGGCCAGTGAAAAACATCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

251

Amino Acids

27.81

Weight (kDa)

6.71

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 2 cut(s) 511, 580
AfiI CCNNNNNNNGG 3 cut(s) 14, 436, 506
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 2 cut(s) 7, 336
AluBI AGCT 2 cut(s) 298, 479
AluI AGCT 2 cut(s) 298, 479
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 3 cut(s) 415, 492, 558
Alw44I GTGCAC 1 cut(s) 558
AoxI GGCC 2 cut(s) 539, 732
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 676
ArsI GACNNNNNNTTYG 4 cut(s) 393, 425, 536, 568
AsuHPI GGTGA 1 cut(s) 588
AxyI CCTNAGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 562
BalI TGGCCA 1 cut(s) 734
BanI GGYRCC 1 cut(s) 425
BauI CACGAG 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 1 cut(s) 406
BccI CCATC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 9, 338
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 3 cut(s) 415, 492, 558
BfaI CTAG 2 cut(s) 237, 395
BisI GCNGC 2 cut(s) 76, 420
BlsI GCNGC 2 cut(s) 77, 421
Bme1390I CCNGG 2 cut(s) 9, 338
BmiI GGNNCC 2 cut(s) 127, 427
BmrFI CCNGG 2 cut(s) 9, 338
BmsI GCATC 2 cut(s) 287, 462
BoxI GACNNNNGTC 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 115, 474
BsaAI YACGTR 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 121, 337, 505
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 436, 506
Bse1I ACTGG 2 cut(s) 434, 735
Bse21I CCTNAGG 1 cut(s) 80
BseBI CCWGG 2 cut(s) 9, 338
BseDI CCNNGG 3 cut(s) 121, 337, 505
BseLI CCNNNNNNNGG 3 cut(s) 14, 436, 506
BseMII CTCAG 2 cut(s) 344, 357
BseNI ACTGG 2 cut(s) 434, 735
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 1 cut(s) 406
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 2 cut(s) 541, 734
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 562
BslI CCNNNNNNNGG 3 cut(s) 14, 436, 506
BsmAI GTCTC 3 cut(s) 415, 492, 558
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 541, 734
Bso31I GGTCTC 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 76
BspANI GGCC 2 cut(s) 541, 734
BspCNI CTCAG 2 cut(s) 343, 358
BspLI GGNNCC 2 cut(s) 127, 427
BspT107I GGYRCC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 492
BsrI ACTGG 2 cut(s) 434, 735
BssECI CCNNGG 3 cut(s) 121, 337, 505
BssMI GATC 1 cut(s) 193
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 9, 338
Bst4CI ACNGT 2 cut(s) 92, 154
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 3 cut(s) 43, 424, 477
BstDEI CTNAG 3 cut(s) 80, 330, 366
BstENI CCTNNNNNAGG 1 cut(s) 504
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 3 cut(s) 415, 492, 558
BstMBI GATC 1 cut(s) 193
BstNI CCWGG 2 cut(s) 9, 338
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 7, 336
BstSLI GKGCMC 1 cut(s) 562
BstSNI TACGTA 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 80
BsuRI GGCC 2 cut(s) 541, 734
BtsIMutI CAGTG 3 cut(s) 97, 441, 742
Cac8I GCNNGC 3 cut(s) 43, 424, 477
Csp6I GTAC 2 cut(s) 510, 579
CviAII CATG 1 cut(s) 620
CviJI RGCY 6 cut(s) 298, 458, 479, 494, 541, 734
CviKI_1 RGCY 6 cut(s) 298, 458, 479, 494, 541, 734
CviQI GTAC 2 cut(s) 510, 579
DdeI CTNAG 3 cut(s) 80, 330, 366
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 732
Eco105I TACGTA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 504
EcoRII CCWGG 2 cut(s) 7, 336
EcoT14I CCWWGG 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 1 cut(s) 623
FaiI YATR 9 cut(s) 65, 246, 348, 386, 621, 631, 633, 717, 750
FatI CATG 1 cut(s) 619
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 76, 420
Fsp4HI GCNGC 2 cut(s) 76, 420
FspBI CTAG 2 cut(s) 237, 395
GluI GCNGC 2 cut(s) 76, 420
HaeIII GGCC 2 cut(s) 541, 734
Hin1II CATG 1 cut(s) 623
HinfI GANTC 7 cut(s) 59, 248, 272, 284, 323, 401, 525
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 1 cut(s) 560
Hpy188I TCNGA 7 cut(s) 105, 283, 294, 454, 530, 589, 723
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 1 cut(s) 560
HpyAV CCTTC 3 cut(s) 199, 510, 531
HpyCH4III ACNGT 2 cut(s) 92, 154
HpyCH4IV ACGT 2 cut(s) 33, 577
HpyCH4V TGCA 7 cut(s) 55, 157, 278, 443, 475, 515, 560
HpyF3I CTNAG 3 cut(s) 80, 330, 366
HpySE526I ACGT 2 cut(s) 33, 577
Hsp92II CATG 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 1 cut(s) 193
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 2 cut(s) 287, 462
MaeI CTAG 2 cut(s) 237, 395
MaeII ACGT 2 cut(s) 33, 577
MaeIII GTNAC 3 cut(s) 92, 310, 594
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 3 cut(s) 97, 396, 534
MhlI GDGCHC 1 cut(s) 562
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 4 cut(s) 267, 448, 636, 676
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 116, 139, 301, 717
Mox20I TGGCCA 1 cut(s) 734
MscI TGGCCA 1 cut(s) 734
MseI TTAA 4 cut(s) 375, 533, 548, 569
Msp20I TGGCCA 1 cut(s) 734
MspR9I CCNGG 2 cut(s) 9, 338
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 2 cut(s) 9, 338
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 623
NlaIV GGNNCC 2 cut(s) 127, 427
NmuCI GTSAC 2 cut(s) 92, 594
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 6 cut(s) 59, 248, 272, 323, 401, 525
PkrI GCNGC 2 cut(s) 77, 421
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Ppu21I YACGTR 1 cut(s) 34
PshAI GACNNNNGTC 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 7, 336
PspGI CCWGG 2 cut(s) 7, 336
PspN4I GGNNCC 2 cut(s) 127, 427
RsaI GTAC 2 cut(s) 511, 580
RsaNI GTAC 2 cut(s) 510, 579
SaqAI TTAA 4 cut(s) 375, 533, 548, 569
SatI GCNGC 2 cut(s) 76, 420
Sau3AI GATC 1 cut(s) 193
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 9, 338
SduI GDGCHC 1 cut(s) 562
SetI ASST 9 cut(s) 36, 127, 300, 312, 481, 511, 580, 607, 728
SfaNI GCATC 2 cut(s) 287, 462
SmlI CTYRAG 2 cut(s) 130, 489
SmoI CTYRAG 2 cut(s) 130, 489
SnaBI TACGTA 1 cut(s) 34
Sse9I AATT 4 cut(s) 267, 448, 636, 676
SsiI CCGC 1 cut(s) 76
SspI AATATT 1 cut(s) 694
SspMI CTAG 2 cut(s) 237, 395
StyD4I CCNGG 2 cut(s) 7, 336
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 2 cut(s) 92, 154
TaiI ACGT 2 cut(s) 36, 580
TaqI TCGA 2 cut(s) 470, 520
TasI AATT 4 cut(s) 267, 448, 636, 676
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 6 cut(s) 59, 248, 272, 323, 401, 525
Tru1I TTAA 4 cut(s) 375, 533, 548, 569
Tru9I TTAA 4 cut(s) 375, 533, 548, 569
TscAI CASTG 3 cut(s) 97, 441, 742
TseFI GTSAC 2 cut(s) 92, 594
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 2 cut(s) 92, 594
TspGWI ACGGA 2 cut(s) 89, 403
TspRI CASTG 3 cut(s) 97, 441, 742
VneI GTGCAC 1 cut(s) 558
XagI CCTNNNNNAGG 1 cut(s) 504
XapI RAATTY 1 cut(s) 676
XbaI TCTAGA 1 cut(s) 394
XspI CTAG 2 cut(s) 237, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.