Rh5CG348000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003137
Physical Location & Seq
Forward (+)
40079860 .. 40082781
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG348000.1

Sequence Viewer

Length: 1149 bp
ATGAGTGGGATTTCCAAGGAGGCTCAGCTTTCCATCGCTGCCTCTTCGATGTTTCCGGGGTTTAGGTTCTCACCGACCGACGAGGAATTGATTTCGCACTACCTTAGGATCAAGTTGGAGTCCCCTGAGAAGAGTCTGGAGGTCATTTCCGAAGTTGATATCTGCAACTTCGAGCCCTGGGACCTACCGGCTAAATCTGTCATTCAATCGGAGAATGAGTGGTTCTTCTTTTCTCCGCGGGGTAGAAAGTACCCAAATGGTTCACAGAGCAGGAGGGCAACTGAATCTGGTTATTGGAAAGCCACAGGCAAAGAACGTAATGTAAAGTCAAGTTCTAATGTTATCGGTACCAAGAGGACACTTGTGTTCCACATCGGACGTGCACCAAAAGGTGAAAGAACAGAATGGATTATGCACGAATACTGTATGCTGAGTGATAAATCCCAGGATTCTATGGTTGTTTGCCGCCTTAGGAAGAACAGTGATTTCCATCTGAATGACACCACAAACCGGGGTTCCTCAAGTCAAAGTCCTTTATCAACTGTGCAGAATAGTGAAAATGCTATCTTCGAAGTTGGTATTGATCAAGGGGAGAAGGCAACTGAATGCCACTCAAAGAAATCTACTAGCAGTTATGATTCTCATTCTATTGAGCAAATTGATTCTGCATCTGACTCCTATCCGAAGCTGACACCAGAGGTAACACAGATGGAATCATCTCAGCACCAAAAGGGTTCTTATGATGATGACTTCTTCGCTGAGATACTTAAAGATGATATAATCAATCTAGACGAATCTTCAGTCTCCATTGCTGCTGACATCCCACCAGTGGTTGCAAATAATTCAGAAGCCCAACAACATTCAGTGCAAGCCGTTGTGTCTCAAGCCATTCCTTTCCAAGGTACTGCAAATCGAAGAATCAGATTAAGAAGGCCAAAGTTAAAGTCTCGTGCACAAGCATTAACAGAACGTACCAAGTCAGAGCAGTCACCAAAAGGTTTAGCAAATAATCAAGTGTTGATATATGTAATTTTGGTTTTTTTGGTATTGCTCATTCTGTTTCTGTCAAATTTTTGTTTTTCTAATATTTCTGGGTCTGTTTCTTTTTATGTTCGGAGGTTTCTGGCCGGTGAAAAACATCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

382

Amino Acids

42.93

Weight (kDa)

7.15

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 142 8e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 238
AciI CCGC 3 cut(s) 236, 238, 466
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 1125
AcsI RAATTY 1 cut(s) 1069
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 4 cut(s) 251, 349, 904, 973
AfiI CCNNNNNNNGG 3 cut(s) 510, 829, 899
AgsI TTSAA 1 cut(s) 206
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 2 cut(s) 176, 444
AluBI AGCT 2 cut(s) 28, 688
AluI AGCT 2 cut(s) 28, 688
Alw21I GWGCWC 2 cut(s) 385, 955
Alw26I GTCTC 3 cut(s) 808, 885, 951
Alw44I GTGCAC 2 cut(s) 381, 951
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 932, 1125
ApaLI GTGCAC 2 cut(s) 381, 951
ApeKI GCWGC 2 cut(s) 38, 812
ApoI RAATTY 1 cut(s) 1069
ArsI GACNNNNNNTTYG 4 cut(s) 786, 818, 929, 961
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 2 cut(s) 57, 512
AsuHPI GGTGA 4 cut(s) 63, 404, 981, 1142
AsuII TTCGAA 1 cut(s) 570
AvaII GGWCC 1 cut(s) 181
AxyI CCTNAGG 2 cut(s) 104, 470
BaeGI GKGCMC 2 cut(s) 385, 955
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 948
Bbv12I GWGCWC 2 cut(s) 385, 955
BbvI GCAGC 2 cut(s) 25, 799
BccI CCATC 3 cut(s) 41, 498, 703
BceAI ACGGC 1 cut(s) 857
BciT130I CCWGG 2 cut(s) 178, 446
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 2 cut(s) 57, 512
BcoDI GTCTC 3 cut(s) 808, 885, 951
BfaI CTAG 2 cut(s) 627, 788
BisI GCNGC 3 cut(s) 39, 466, 813
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 3 cut(s) 40, 467, 814
Bme1390I CCNGG 4 cut(s) 57, 178, 446, 512
Bme18I GGWCC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 182, 349, 517
BmrFI CCNGG 4 cut(s) 57, 178, 446, 512
BmsI GCATC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 505, 867
BpuMI CCSGG 2 cut(s) 57, 512
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 8 cut(s) 15, 56, 176, 177, 236, 444, 511, 898
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 510, 829, 899
Bse118I RCCGGY 2 cut(s) 187, 1127
Bse1I ACTGG 1 cut(s) 827
Bse21I CCTNAGG 2 cut(s) 104, 470
Bse3DI GCAATG 1 cut(s) 807
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 2 cut(s) 178, 446
BseDI CCNNGG 8 cut(s) 15, 56, 176, 177, 236, 444, 511, 898
BseGI GGATG 1 cut(s) 819
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 3 cut(s) 510, 829, 899
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 5 cut(s) 38, 117, 422, 734, 750
BseNI ACTGG 1 cut(s) 827
BseSI GKGCMC 2 cut(s) 385, 955
BseXI GCAGC 2 cut(s) 25, 799
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 934, 1127
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 385, 955
BsiSI CCGG 4 cut(s) 56, 188, 511, 1128
BslFI GGGAC 2 cut(s) 106, 194
BslI CCNNNNNNNGG 3 cut(s) 510, 829, 899
BsmAI GTCTC 3 cut(s) 808, 885, 951
BsmFI GGGAC 2 cut(s) 106, 194
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 2 cut(s) 934, 1127
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 177, 385, 955
Bsp143I GATC 2 cut(s) 108, 583
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 3 cut(s) 236, 238, 466
BspANI GGCC 2 cut(s) 934, 1127
BspCNI CTCAG 5 cut(s) 37, 118, 423, 733, 751
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 182, 349, 517
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 570
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 807
BsrFI RCCGGY 2 cut(s) 187, 1127
BsrI ACTGG 1 cut(s) 827
BssAI RCCGGY 2 cut(s) 187, 1127
BssECI CCNNGG 8 cut(s) 15, 56, 176, 177, 236, 444, 511, 898
BssMI GATC 2 cut(s) 108, 583
BssSI CACGAG 1 cut(s) 948
BssT1I CCWWGG 2 cut(s) 15, 898
Bst2BI CACGAG 1 cut(s) 948
Bst2UI CCWGG 2 cut(s) 178, 446
Bst4CI ACNGT 3 cut(s) 425, 482, 544
Bst6I CTCTTC 2 cut(s) 49, 125
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 870
BstDEI CTNAG 7 cut(s) 24, 104, 126, 431, 470, 720, 759
BstDSI CCRYGG 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 897
BstF5I GGATG 1 cut(s) 819
BstFNI CGCG 1 cut(s) 238
BstKTI GATC 2 cut(s) 111, 586
BstMAI GTCTC 3 cut(s) 808, 885, 951
BstMBI GATC 2 cut(s) 108, 583
BstMCI CGRYCG 1 cut(s) 78
BstNI CCWGG 2 cut(s) 178, 446
BstSCI CCNGG 4 cut(s) 55, 176, 444, 510
BstSLI GKGCMC 2 cut(s) 385, 955
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 25, 799
Bsu36I CCTNAGG 2 cut(s) 104, 470
BsuRI GGCC 2 cut(s) 934, 1127
BtgI CCRYGG 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 380
BtsCI GGATG 1 cut(s) 819
BtsIMutI CAGTG 3 cut(s) 487, 834, 870
Cac8I GCNNGC 1 cut(s) 870
Cfr10I RCCGGY 2 cut(s) 187, 1127
Cfr13I GGNCC 1 cut(s) 181
Cfr42I CCGCGG 1 cut(s) 239
Csp6I GTAC 4 cut(s) 250, 348, 903, 972
CviQI GTAC 4 cut(s) 250, 348, 903, 972
DdeI CTNAG 7 cut(s) 24, 104, 126, 431, 470, 720, 759
DpnI GATC 2 cut(s) 110, 585
DpnII GATC 2 cut(s) 108, 583
EaeI YGGCCR 1 cut(s) 1125
Eam1104I CTCTTC 2 cut(s) 49, 125
EarI CTCTTC 2 cut(s) 49, 125
Eco130I CCWWGG 2 cut(s) 15, 898
Eco24I GRGCYC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 783
Eco81I CCTNAGG 2 cut(s) 104, 470
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 176, 444
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 15, 898
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 15, 898
FaqI GGGAC 2 cut(s) 106, 194
FauI CCCGC 1 cut(s) 231
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 3 cut(s) 39, 466, 813
FokI GGATG 1 cut(s) 806
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 39, 466, 813
FspBI CTAG 2 cut(s) 627, 788
GluI GCNGC 3 cut(s) 39, 466, 813
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 2 cut(s) 934, 1127
HapII CCGG 4 cut(s) 56, 188, 511, 1128
HpaII CCGG 4 cut(s) 56, 188, 511, 1128
HphI GGTGA 4 cut(s) 63, 404, 981, 1142
Hpy166II GTNNAC 3 cut(s) 263, 383, 953
Hpy188III TCNNGA 2 cut(s) 137, 788
Hpy8I GTNNAC 3 cut(s) 263, 383, 953
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 589, 924
HpyCH4III ACNGT 3 cut(s) 425, 482, 544
HpyCH4IV ACGT 3 cut(s) 316, 379, 970
HpyCH4V TGCA 9 cut(s) 165, 383, 415, 547, 668, 836, 868, 908, 953
HpyF3I CTNAG 7 cut(s) 24, 104, 126, 431, 470, 720, 759
HpySE526I ACGT 3 cut(s) 316, 379, 970
KpnI GGTACC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 583
KspI CCGCGG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 108, 583
Lsp1109I GCAGC 2 cut(s) 25, 799
LweI GCATC 1 cut(s) 677
MaeI CTAG 2 cut(s) 627, 788
MaeII ACGT 3 cut(s) 316, 379, 970
MaeIII GTNAC 2 cut(s) 700, 987
MalI GATC 2 cut(s) 110, 585
MboI GATC 2 cut(s) 108, 583
MboII GAAGA 8 cut(s) 36, 142, 217, 487, 559, 745, 789, 927
MhlI GDGCHC 3 cut(s) 177, 385, 955
MluCI AATT 5 cut(s) 86, 657, 841, 1029, 1069
MlyI GAGTC 3 cut(s) 128, 142, 668
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 9 cut(s) 13, 52, 76, 133, 267, 348, 529, 691, 1110
MseI TTAA 4 cut(s) 768, 926, 941, 962
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 4 cut(s) 56, 188, 511, 1128
MspR9I CCNGG 4 cut(s) 57, 178, 446, 512
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 2 cut(s) 178, 446
MvnI CGCG 1 cut(s) 238
NciI CCSGG 2 cut(s) 57, 512
NdeII GATC 2 cut(s) 108, 583
NlaIV GGNNCC 3 cut(s) 182, 349, 517
NmuCI GTSAC 1 cut(s) 987
NspV TTCGAA 1 cut(s) 570
PasI CCCWGGG 1 cut(s) 177
PctI GAATGC 1 cut(s) 611
PfeI GAWTC 7 cut(s) 284, 449, 638, 662, 713, 794, 918
PkrI GCNGC 3 cut(s) 40, 467, 814
PleI GAGTC 3 cut(s) 127, 141, 668
PpsI GAGTC 3 cut(s) 127, 141, 668
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 176, 444
PspGI CCWGG 2 cut(s) 176, 444
PspN4I GGNNCC 3 cut(s) 182, 349, 517
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 4 cut(s) 251, 349, 904, 973
RsaNI GTAC 4 cut(s) 250, 348, 903, 972
RseI CAYNNNNRTG 1 cut(s) 495
SacII CCGCGG 1 cut(s) 239
SaqAI TTAA 4 cut(s) 768, 926, 941, 962
SatI GCNGC 3 cut(s) 39, 466, 813
Sau3AI GATC 2 cut(s) 108, 583
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 3 cut(s) 128, 142, 668
ScrFI CCNGG 4 cut(s) 57, 178, 446, 512
SduI GDGCHC 3 cut(s) 177, 385, 955
SfaNI GCATC 1 cut(s) 677
Sfr303I CCGCGG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 239
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 2 cut(s) 520, 882
SmoI CTYRAG 2 cut(s) 520, 882
Sse9I AATT 5 cut(s) 86, 657, 841, 1029, 1069
SsiI CCGC 3 cut(s) 236, 238, 466
SspI AATATT 1 cut(s) 1087
SspMI CTAG 2 cut(s) 627, 788
StyD4I CCNGG 4 cut(s) 55, 176, 444, 510
StyI CCWWGG 2 cut(s) 15, 898
TaaI ACNGT 3 cut(s) 425, 482, 544
TaiI ACGT 3 cut(s) 319, 382, 973
TaqI TCGA 4 cut(s) 47, 171, 570, 913
TaqII GACCGA 1 cut(s) 92
TasI AATT 5 cut(s) 86, 657, 841, 1029, 1069
TauI GCSGC 1 cut(s) 468
TfiI GAWTC 7 cut(s) 284, 449, 638, 662, 713, 794, 918
Tru1I TTAA 4 cut(s) 768, 926, 941, 962
Tru9I TTAA 4 cut(s) 768, 926, 941, 962
TscAI CASTG 3 cut(s) 487, 834, 870
TseFI GTSAC 1 cut(s) 987
TseI GCWGC 2 cut(s) 38, 812
Tsp45I GTSAC 1 cut(s) 987
TspRI CASTG 3 cut(s) 487, 834, 870
VneI GTGCAC 2 cut(s) 381, 951
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 897
XapI RAATTY 1 cut(s) 1069
XbaI TCTAGA 1 cut(s) 787
XspI CTAG 2 cut(s) 627, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.