Rorug05G0233900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003137
Physical Location & Seq
Forward (+)
24430705 .. 24431865
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0233900.1

Sequence Viewer

Length: 918 bp
ATGTATCGAGAAGGGCTTGTGATCGAGTGGTTGAGAGCACAACCTCTTTACAAGGGGTCAGTGCTCGTGCTCCAGTGGTTGGGAGCGGAGCTTTACTGCAGGAGGTCGGGGTTTCGAACCTTGCCTCTTGCTACATTTTGGTGTATTTATTCGGTAATACGCATACATACGGTCGGTACGGTATATCGACGGTATGCGGATACTCGTACCGTAGCCGAGCCGAAGGAAGCAATACGGTACGGCTCAGCCGAGCCGAAAGTCGGTAGGCCGAATTTTCGGCCCAAATCTCATACCTTGCTACCTGCACTCATCTTTAAGATTGAAGCTTTCGAAAAATTGATGATGCTTTTGTGGGCCTTATGGAAGAATAGAAACAGTATGTTGTGGGAGACTATATTACAACCAGCTCATAGTATCTTACTCTACTCGCTGACATGGTTGGAAGAATTCCAACAGGCAAGAACTGTAAATGCAGATATAGTAACAAGGGCCAGAGGATCTAAACCAACGTGGAAGCCCAAGGTAGAGCCTCAGTGCAAGATGAACGTAGATGATGCTTTTCTTCCGCAGATGATGAAGGGTGGTACTGGTGGTATCCTTCGTAGTGCGAAGGGGCAGTTTACTGCAGCTTTTGCACATACTATACAGCATGTGGACTCGGCAAAGCAAGCAGAGTTGCTGGCCATTCGAGGAGGTCTTGATTTAGCTAAGGATTTGCAACTGCAGAATGTCACTATAGAAAGTTACTGTTTAGAGGCAGTCCAACTAATCCGCGGTAAAGATCAGGAGCTTGACAAGAATGGAGCTTTAGTAGATGACATCGATGTTCTTATGAAGAGCATCCCAGGTGTGCTGATTAAATTTGCATCTCGTTCTTGCAACATGGTTGCACATAGACTTGTTGCCATTTCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

305

Amino Acids

34.59

Weight (kDa)

9.53

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 183 - 301 5.9e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 86
AccII CGCG 1 cut(s) 774
AciI CCGC 5 cut(s) 86, 197, 566, 772, 774
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 3 cut(s) 271, 446, 860
AfaI GTAC 4 cut(s) 178, 208, 239, 586
AfiI CCNNNNNNNGG 2 cut(s) 79, 260
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 844
AluBI AGCT 7 cut(s) 91, 326, 407, 629, 707, 790, 806
AluI AGCT 7 cut(s) 91, 326, 407, 629, 707, 790, 806
Alw21I GWGCWC 3 cut(s) 40, 66, 72
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 505
AoxI GGCC 5 cut(s) 266, 278, 354, 489, 681
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 3 cut(s) 271, 446, 860
AspS9I GGNCC 3 cut(s) 279, 354, 489
AsuII TTCGAA 2 cut(s) 115, 330
BalI TGGCCA 1 cut(s) 683
BauI CACGAG 1 cut(s) 65
Bbv12I GWGCWC 3 cut(s) 40, 66, 72
BbvI GCAGC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 846
BciVI GTATCC 2 cut(s) 193, 605
BcoDI GTCTC 1 cut(s) 383
BfmI CTRYAG 4 cut(s) 97, 624, 722, 735
BfuAI ACCTGC 1 cut(s) 310
BfuI GTATCC 2 cut(s) 193, 605
BisI GCNGC 1 cut(s) 627
BlpI GCTNAGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 628
Bme1390I CCNGG 1 cut(s) 846
BmgT120I GGNCC 3 cut(s) 279, 354, 489
BmrFI CCNGG 1 cut(s) 846
BmsI GCATC 4 cut(s) 333, 544, 849, 875
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 708
Bpu1102I GCTNAGC 1 cut(s) 244
Bpu14I TTCGAA 2 cut(s) 115, 330
Bsa29I ATCGAT 1 cut(s) 822
BsaJI CCNNGG 3 cut(s) 519, 772, 844
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 260
Bse1I ACTGG 2 cut(s) 73, 592
BseBI CCWGG 1 cut(s) 846
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 3 cut(s) 519, 772, 844
BseGI GGATG 1 cut(s) 840
BseLI CCNNNNNNNGG 2 cut(s) 79, 260
BseMII CTCAG 2 cut(s) 258, 545
BseNI ACTGG 2 cut(s) 73, 592
BseRI GAGGAG 1 cut(s) 705
BseXI GCAGC 1 cut(s) 638
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 774
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 5 cut(s) 268, 280, 356, 491, 683
BshVI ATCGAT 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 3 cut(s) 40, 66, 72
BslI CCNNNNNNNGG 2 cut(s) 79, 260
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 5 cut(s) 268, 280, 356, 491, 683
Bsp119I TTCGAA 2 cut(s) 115, 330
Bsp1286I GDGCHC 3 cut(s) 40, 66, 72
Bsp143I GATC 3 cut(s) 21, 497, 781
Bsp1720I GCTNAGC 1 cut(s) 244
BspACI CCGC 5 cut(s) 86, 197, 566, 772, 774
BspANI GGCC 5 cut(s) 268, 280, 356, 491, 683
BspCNI CTCAG 2 cut(s) 257, 544
BspDI ATCGAT 1 cut(s) 822
BspFNI CGCG 1 cut(s) 774
BspMAI CTGCAG 3 cut(s) 101, 628, 726
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 830
BspT104I TTCGAA 2 cut(s) 115, 330
BsrBI CCGCTC 1 cut(s) 86
BsrI ACTGG 2 cut(s) 73, 592
BssECI CCNNGG 3 cut(s) 519, 772, 844
BssMI GATC 3 cut(s) 21, 497, 781
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 8 cut(s) 172, 181, 192, 211, 237, 377, 466, 749
Bst6I CTCTTC 1 cut(s) 830
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBI TTCGAA 2 cut(s) 115, 330
BstC8I GCNNGC 2 cut(s) 669, 681
BstDEI CTNAG 3 cut(s) 244, 531, 708
BstDSI CCRYGG 1 cut(s) 772
BstF5I GGATG 1 cut(s) 840
BstFNI CGCG 1 cut(s) 774
BstKTI GATC 3 cut(s) 24, 500, 784
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 3 cut(s) 21, 497, 781
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 632, 668
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 844
BstSFI CTRYAG 4 cut(s) 97, 624, 722, 735
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 1 cut(s) 638
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
Bsu15I ATCGAT 1 cut(s) 822
BsuI GTATCC 2 cut(s) 193, 605
BsuRI GGCC 5 cut(s) 268, 280, 356, 491, 683
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 772
BtsCI GGATG 1 cut(s) 840
BtsIMutI CAGTG 3 cut(s) 66, 80, 539
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 669, 681
Cfr13I GGNCC 3 cut(s) 279, 354, 489
Cfr42I CCGCGG 1 cut(s) 775
ClaI ATCGAT 1 cut(s) 822
Csp6I GTAC 4 cut(s) 177, 207, 238, 585
CviAII CATG 3 cut(s) 435, 650, 883
CviQI GTAC 4 cut(s) 177, 207, 238, 585
DdeI CTNAG 3 cut(s) 244, 531, 708
DpnI GATC 3 cut(s) 23, 499, 783
DpnII GATC 3 cut(s) 21, 497, 781
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
Eco130I CCWWGG 1 cut(s) 519
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 3 cut(s) 438, 653, 886
FatI CATG 3 cut(s) 434, 649, 882
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 1 cut(s) 827
Fsp4HI GCNGC 1 cut(s) 627
GluI GCNGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 5 cut(s) 268, 280, 356, 491, 683
Hin1II CATG 3 cut(s) 438, 653, 886
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 1 cut(s) 656
Hpy166II GTNNAC 2 cut(s) 621, 655
Hpy188III TCNNGA 3 cut(s) 8, 698, 785
Hpy8I GTNNAC 2 cut(s) 621, 655
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 5 cut(s) 5, 217, 571, 604, 608
HpyCH4III ACNGT 8 cut(s) 172, 181, 192, 211, 237, 377, 466, 749
HpyCH4IV ACGT 2 cut(s) 509, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 632, 668
HpyF3I CTNAG 3 cut(s) 244, 531, 708
HpySE526I ACGT 2 cut(s) 509, 546
Hsp92II CATG 3 cut(s) 438, 653, 886
KspI CCGCGG 1 cut(s) 775
Kzo9I GATC 3 cut(s) 21, 497, 781
LguI GCTCTTC 1 cut(s) 830
LmnI GCTCC 5 cut(s) 75, 83, 88, 787, 803
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 4 cut(s) 333, 544, 849, 875
MaeII ACGT 2 cut(s) 509, 546
MaeIII GTNAC 3 cut(s) 481, 730, 743
MalI GATC 3 cut(s) 23, 499, 783
MbiI CCGCTC 1 cut(s) 86
MboI GATC 3 cut(s) 21, 497, 781
MboII GAAGA 4 cut(s) 376, 455, 554, 847
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 3 cut(s) 40, 66, 72
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 4 cut(s) 271, 335, 446, 860
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 3 cut(s) 420, 475, 787
MnlI CCTC 8 cut(s) 54, 96, 135, 488, 540, 683, 686, 748
Mox20I TGGCCA 1 cut(s) 683
MscI TGGCCA 1 cut(s) 683
MseI TTAA 2 cut(s) 315, 858
MslI CAYNNNNRTG 1 cut(s) 139
Msp20I TGGCCA 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 774
MspR9I CCNGG 1 cut(s) 846
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 2 cut(s) 632, 668
NdeII GATC 3 cut(s) 21, 497, 781
NlaIII CATG 3 cut(s) 438, 653, 886
NmeAIII GCCGAG 3 cut(s) 241, 274, 638
NmuCI GTSAC 1 cut(s) 730
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 2 cut(s) 115, 330
PciSI GCTCTTC 1 cut(s) 830
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspPI GGNCC 3 cut(s) 279, 354, 489
PstI CTGCAG 3 cut(s) 101, 628, 726
PsuI RGATCY 1 cut(s) 497
RsaI GTAC 4 cut(s) 178, 208, 239, 586
RsaNI GTAC 4 cut(s) 177, 207, 238, 585
RseI CAYNNNNRTG 1 cut(s) 139
SacII CCGCGG 1 cut(s) 775
SapI GCTCTTC 1 cut(s) 830
SaqAI TTAA 2 cut(s) 315, 858
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 3 cut(s) 21, 497, 781
Sau96I GGNCC 3 cut(s) 279, 354, 489
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 3 cut(s) 40, 66, 72
SfaNI GCATC 4 cut(s) 333, 544, 849, 875
SfcI CTRYAG 4 cut(s) 97, 624, 722, 735
Sfr303I CCGCGG 1 cut(s) 775
SfuI TTCGAA 2 cut(s) 115, 330
SgrBI CCGCGG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 139
Sse9I AATT 4 cut(s) 271, 335, 446, 860
SsiI CCGC 5 cut(s) 86, 197, 566, 772, 774
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 8 cut(s) 172, 181, 192, 211, 237, 377, 466, 749
TaiI ACGT 2 cut(s) 512, 549
TaqI TCGA 7 cut(s) 7, 24, 115, 187, 330, 688, 822
TasI AATT 4 cut(s) 271, 335, 446, 860
Tru1I TTAA 2 cut(s) 315, 858
Tru9I TTAA 2 cut(s) 315, 858
TscAI CASTG 3 cut(s) 66, 80, 539
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 3 cut(s) 557, 590, 848
TspRI CASTG 3 cut(s) 66, 80, 539
Van91I CCANNNNNTGG 1 cut(s) 79
XapI RAATTY 3 cut(s) 271, 446, 860
XceI RCATGY 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.