RchiOBHm_Chr5g0047091
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003137
Physical Location & Seq
Forward (+)
43382579 .. 43384516
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32502

Sequence Viewer

Length: 735 bp
ATGCACGAATACTGTATGCTGAATGATAAATCCCAGGATTCTATGGTTGTTTGCCGCCTTAGGAAGAACAGTGACTTCCGTCTGAATGACACCACAAACCGAGGTTCCTCAAGTCAAAGTCCTTTATCAACTGTGCAGAATAGTGAAAATGCTATCTTTGAAGTTGGTATTGATCAAGGGGAGAAGGCAACTGAATGCCACTCAAAGAAATCTACTAGCAGTTATGATTCTCATTCTATTGAGCAAATTGATTCTGCATCTGACTCCTATCCGAAGCTGACACCAGAGGTAACACAGATGGAATCATCTCAGCACCAGGGTTCTTATGATGATGACTTCTTTGCTGAGATACTTAAAGATGATATAATAAATCTAGACGAATCTTCAGTCTCCGTTGCTGCTGGCACCCCACCAGTGGTTGCAAATAATTCAGAAGCCCAACAACATTCGATGCAAGCTGTTGGGTCTCAAGCCATTCCTTCCCAAGGTACTGCAAATCGAAGAATCAGATTAAGAAGGCCAAAGTTAAAGTCTCGTGCACAGGCATTAACAGAACGTACCAAGTCAGAGCAGTCACCAAAAGGTTTAGCAAATAATCATGTGTTGATATATGTAATTTTGGTTTTTTTGGTATTGCTCATTCTGTTTCTGTCAAATTTTTGTTTTTCTAATATTTCTGGGTCTGTTTCTTTTTATGTTCGGAGGTTTCTGGCCAGTGAAAAACATCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

244

Amino Acids

27.17

Weight (kDa)

6.45

Isoelectric Point (pI)

61.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AciI CCGC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 490, 559
AfiI CCNNNNNNNGG 2 cut(s) 415, 485
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 2 cut(s) 33, 315
AluBI AGCT 2 cut(s) 277, 458
AluI AGCT 2 cut(s) 277, 458
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 3 cut(s) 394, 471, 537
Alw44I GTGCAC 1 cut(s) 537
AoxI GGCC 2 cut(s) 518, 711
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 655
ArsI GACNNNNNNTTYG 4 cut(s) 372, 404, 515, 547
AsuHPI GGTGA 1 cut(s) 567
AxyI CCTNAGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 541
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 404
BauI CACGAG 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 35, 317
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 3 cut(s) 394, 471, 537
BfaI CTAG 2 cut(s) 216, 374
BisI GCNGC 2 cut(s) 55, 399
BlsI GCNGC 2 cut(s) 56, 400
Bme1390I CCNGG 2 cut(s) 35, 317
BmiI GGNNCC 2 cut(s) 106, 406
BmrFI CCNGG 2 cut(s) 35, 317
BmsI GCATC 2 cut(s) 266, 441
BoxI GACNNNNGTC 1 cut(s) 78
BpuEI CTTGAG 2 cut(s) 94, 453
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 4 cut(s) 33, 100, 316, 484
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 485
Bse1I ACTGG 2 cut(s) 413, 714
Bse21I CCTNAGG 1 cut(s) 59
BseBI CCWGG 2 cut(s) 35, 317
BseDI CCNNGG 4 cut(s) 33, 100, 316, 484
BseLI CCNNNNNNNGG 2 cut(s) 415, 485
BseMII CTCAG 2 cut(s) 323, 336
BseNI ACTGG 2 cut(s) 413, 714
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 2 cut(s) 520, 713
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 415, 485
BsmAI GTCTC 3 cut(s) 394, 471, 537
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 2 cut(s) 520, 713
Bso31I GGTCTC 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 520, 713
BspCNI CTCAG 2 cut(s) 322, 337
BspLI GGNNCC 2 cut(s) 106, 406
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 471
BsrI ACTGG 2 cut(s) 413, 714
BssECI CCNNGG 4 cut(s) 33, 100, 316, 484
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 2 cut(s) 35, 317
Bst4CI ACNGT 3 cut(s) 14, 71, 133
BstC8I GCNNGC 2 cut(s) 403, 456
BstDEI CTNAG 3 cut(s) 59, 309, 345
BstENI CCTNNNNNAGG 1 cut(s) 483
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 3 cut(s) 394, 471, 537
BstMBI GATC 1 cut(s) 172
BstNI CCWGG 2 cut(s) 35, 317
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 33, 315
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 385
Bsu36I CCTNAGG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 520, 713
BtsIMutI CAGTG 3 cut(s) 76, 420, 721
Cac8I GCNNGC 2 cut(s) 403, 456
Csp6I GTAC 2 cut(s) 489, 558
CviAII CATG 1 cut(s) 599
CviJI RGCY 6 cut(s) 277, 437, 458, 473, 520, 713
CviKI_1 RGCY 6 cut(s) 277, 437, 458, 473, 520, 713
CviQI GTAC 2 cut(s) 489, 558
DdeI CTNAG 3 cut(s) 59, 309, 345
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 484
Eco31I GGTCTC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRII CCWGG 2 cut(s) 33, 315
EcoT14I CCWWGG 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 1 cut(s) 602
FatI CATG 1 cut(s) 598
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 55, 399
Fsp4HI GCNGC 2 cut(s) 55, 399
FspBI CTAG 2 cut(s) 216, 374
GluI GCNGC 2 cut(s) 55, 399
HaeIII GGCC 2 cut(s) 520, 713
Hin1II CATG 1 cut(s) 602
HinfI GANTC 7 cut(s) 38, 227, 251, 263, 302, 380, 504
HphI GGTGA 1 cut(s) 567
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 7 cut(s) 84, 262, 273, 433, 509, 568, 702
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 1 cut(s) 539
HpyAV CCTTC 3 cut(s) 178, 489, 510
HpyCH4III ACNGT 3 cut(s) 14, 71, 133
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 7 cut(s) 4, 136, 257, 422, 454, 494, 539
HpyF3I CTNAG 3 cut(s) 59, 309, 345
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 1 cut(s) 602
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 266, 441
MaeI CTAG 2 cut(s) 216, 374
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 3 cut(s) 71, 289, 573
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 76, 375, 513
MhlI GDGCHC 1 cut(s) 541
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 4 cut(s) 246, 427, 615, 655
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 4 cut(s) 95, 118, 280, 696
Mox20I TGGCCA 1 cut(s) 713
MscI TGGCCA 1 cut(s) 713
MseI TTAA 4 cut(s) 354, 512, 527, 548
Msp20I TGGCCA 1 cut(s) 713
MspR9I CCNGG 2 cut(s) 35, 317
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 2 cut(s) 35, 317
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 602
NlaIV GGNNCC 2 cut(s) 106, 406
NmuCI GTSAC 2 cut(s) 71, 573
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 6 cut(s) 38, 227, 251, 302, 380, 504
PkrI GCNGC 2 cut(s) 56, 400
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 33, 315
PspGI CCWGG 2 cut(s) 33, 315
PspN4I GGNNCC 2 cut(s) 106, 406
RsaI GTAC 2 cut(s) 490, 559
RsaNI GTAC 2 cut(s) 489, 558
SaqAI TTAA 4 cut(s) 354, 512, 527, 548
SatI GCNGC 2 cut(s) 55, 399
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 35, 317
SduI GDGCHC 1 cut(s) 541
SetI ASST 8 cut(s) 106, 279, 291, 460, 490, 559, 586, 707
SfaNI GCATC 2 cut(s) 266, 441
SmlI CTYRAG 2 cut(s) 109, 468
SmoI CTYRAG 2 cut(s) 109, 468
Sse9I AATT 4 cut(s) 246, 427, 615, 655
SsiI CCGC 1 cut(s) 55
SspI AATATT 1 cut(s) 673
SspMI CTAG 2 cut(s) 216, 374
StyD4I CCNGG 2 cut(s) 33, 315
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 3 cut(s) 14, 71, 133
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 449, 499
TasI AATT 4 cut(s) 246, 427, 615, 655
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 6 cut(s) 38, 227, 251, 302, 380, 504
Tru1I TTAA 4 cut(s) 354, 512, 527, 548
Tru9I TTAA 4 cut(s) 354, 512, 527, 548
TscAI CASTG 3 cut(s) 76, 420, 721
TseFI GTSAC 2 cut(s) 71, 573
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 2 cut(s) 71, 573
TspGWI ACGGA 2 cut(s) 68, 382
TspRI CASTG 3 cut(s) 76, 420, 721
VneI GTGCAC 1 cut(s) 537
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 1 cut(s) 655
XbaI TCTAGA 1 cut(s) 373
XspI CTAG 2 cut(s) 216, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.