Rh5BG321900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003137
Physical Location & Seq
Forward (+)
43208088 .. 43211659
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG321900.1

Sequence Viewer

Length: 1146 bp
ATGAGTGGGATTTCCAAGGAGGCTCAGCTTTCCATCGCTGCCTCCTCGATGTTTCCGGGGTTTAGGTTCTCACCGACCGACGAGGAATTGATTTCGCACTACCTTAAGAACAAGTTGGAGTACCCTGAGAAGAGCGTGGAGGTCATTTCCGAAGTTGATATCTGCAACTTCGAGCCCTGGGACCTACCGGCTAAATCTGTCATTCAATCGGAGAATGAGTGGTTCTTCTTTTCTCCGCGGGGTAGAAAGTACCCAAATGGTGCACAGAGCAGGAGGGCAACTGAATCTGGTTATTGGAAAGCCACAGGCAAAGAACGTAATGTAAAGTCAAGTTCTAATGTTATCGGTACCAAGAGGACACTTGTGTTCCACATCGGACGTGCACCAAAAGGTGAAAGAACAGAATGGATTATGCACGAATACTGTATGCTGAATGATAAATCCCAGGATTCTATGGTTGTTTGCCGCCTTAGGAAGAACAGTGACTTCCGTCTGAATGACACCACAAACCGAGGTTCCTCAAGTCAAAGTCCTTTATCAACTGTGCAGAATAGTGAAAATGCTATCTTTGAAGTTGGTATTGATCAAGGGGAGAAGGCAACTGAATGCCACTCAAAGAAATCTACTAGCAGTTATGATTCTCATTCTATTGAGCAAATTGATTCTGCATCTGACTCCTATCCGAAGCTGACACCAGAGGTAACACAGATGGAATCATCTCAGCACCAGGGTTCTTATGATGATGACTTCTTTGCTGAGATACTTAAAGATGATATAATAAATCTAGACGAATCTTCAGTCTCCGTTGCTGCTGGCACCCCACCAGTGGTTGCAAATAATTCAGAAGCCCAACAACATTCGATGCAAGCTGTTGGGTCTCAAGCCATTCCTTCCCAAGGTACTGCAAATCGAAGAATCAGATTAAGAAGGCCAAAGTTAAAGTCTCGTGCACAGGCATTAACAGAACGTACCAAGTCAGAGCAGTCACCAAAAGGTTTAGCAAATAATCATGTGTTGATATATGTAATTTTGGTTTTTTTGGTATTGCTCATTCTGTTTCTGTCAAATTTTTGTTTTTCTAATATTTCTGGGTCTGTTTCTTTTTATGTTCGGAGGTTTCTGGCCAGTGAAAAACATCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006355 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010769 GO:0012501 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033619 GO:0033993 GO:0034050 GO:0034976 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045595 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0071944 GO:0080090 GO:0090351 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901564 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

381

Amino Acids

42.76

Weight (kDa)

7.68

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 142 5.6e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 2 cut(s) 347, 815
AccII CGCG 1 cut(s) 238
AciI CCGC 3 cut(s) 236, 238, 466
AcoI YGGCCR 1 cut(s) 1122
AcsI RAATTY 1 cut(s) 1066
AcuI CTGAAG 1 cut(s) 780
AfaI GTAC 5 cut(s) 122, 251, 349, 901, 970
AfiI CCNNNNNNNGG 2 cut(s) 826, 896
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 206, 572
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 3 cut(s) 176, 444, 726
AluBI AGCT 3 cut(s) 28, 688, 869
AluI AGCT 3 cut(s) 28, 688, 869
Alw21I GWGCWC 3 cut(s) 265, 385, 952
Alw26I GTCTC 3 cut(s) 805, 882, 948
Alw44I GTGCAC 3 cut(s) 261, 381, 948
AoxI GGCC 2 cut(s) 929, 1122
ApaLI GTGCAC 3 cut(s) 261, 381, 948
ApeKI GCWGC 2 cut(s) 38, 809
ApoI RAATTY 1 cut(s) 1066
ArsI GACNNNNNNTTYG 4 cut(s) 783, 815, 926, 958
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 63, 404, 978
AvaII GGWCC 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 470
BaeGI GKGCMC 3 cut(s) 265, 385, 952
BalI TGGCCA 1 cut(s) 1124
BanI GGYRCC 2 cut(s) 347, 815
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 945
Bbv12I GWGCWC 3 cut(s) 265, 385, 952
BbvI GCAGC 2 cut(s) 25, 796
BccI CCATC 2 cut(s) 41, 703
BciT130I CCWGG 3 cut(s) 178, 446, 728
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 3 cut(s) 805, 882, 948
BfaI CTAG 2 cut(s) 627, 785
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 3 cut(s) 39, 466, 810
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 3 cut(s) 40, 467, 811
Bme1390I CCNGG 4 cut(s) 57, 178, 446, 728
Bme18I GGWCC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 4 cut(s) 182, 349, 517, 817
BmrFI CCNGG 4 cut(s) 57, 178, 446, 728
BmsI GCATC 2 cut(s) 677, 852
BoxI GACNNNNGTC 1 cut(s) 489
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 505, 864
BpuMI CCSGG 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 9 cut(s) 15, 56, 176, 177, 236, 444, 511, 727, 895
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 826, 896
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 824, 1125
Bse21I CCTNAGG 1 cut(s) 470
BseBI CCWGG 3 cut(s) 178, 446, 728
BseDI CCNNGG 9 cut(s) 15, 56, 176, 177, 236, 444, 511, 727, 895
BseLI CCNNNNNNNGG 2 cut(s) 826, 896
BseMII CTCAG 4 cut(s) 38, 117, 734, 747
BseNI ACTGG 2 cut(s) 824, 1125
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 3 cut(s) 265, 385, 952
BseXI GCAGC 2 cut(s) 25, 796
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 931, 1124
BshNI GGYRCC 2 cut(s) 347, 815
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 3 cut(s) 265, 385, 952
BsiSI CCGG 2 cut(s) 56, 188
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 826, 896
BsmAI GTCTC 3 cut(s) 805, 882, 948
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 2 cut(s) 931, 1124
Bso31I GGTCTC 1 cut(s) 882
Bsp1286I GDGCHC 4 cut(s) 177, 265, 385, 952
Bsp143I GATC 1 cut(s) 583
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 3 cut(s) 236, 238, 466
BspANI GGCC 2 cut(s) 931, 1124
BspCNI CTCAG 4 cut(s) 37, 118, 733, 748
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 4 cut(s) 182, 349, 517, 817
BspQI GCTCTTC 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 347, 815
BspTI CTTAAG 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 882
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 2 cut(s) 824, 1125
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 9 cut(s) 15, 56, 176, 177, 236, 444, 511, 727, 895
BssMI GATC 1 cut(s) 583
BssSI CACGAG 1 cut(s) 945
BssT1I CCWWGG 2 cut(s) 15, 895
Bst2BI CACGAG 1 cut(s) 945
Bst2UI CCWGG 3 cut(s) 178, 446, 728
Bst4CI ACNGT 3 cut(s) 425, 482, 544
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 814, 867
BstDEI CTNAG 5 cut(s) 24, 126, 470, 720, 756
BstDSI CCRYGG 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 894
BstFNI CGCG 1 cut(s) 238
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 3 cut(s) 805, 882, 948
BstMBI GATC 1 cut(s) 583
BstMCI CGRYCG 1 cut(s) 78
BstNI CCWGG 3 cut(s) 178, 446, 728
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 4 cut(s) 55, 176, 444, 726
BstSLI GKGCMC 3 cut(s) 265, 385, 952
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 25, 796
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 2 cut(s) 931, 1124
BtgI CCRYGG 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 380
BtsIMutI CAGTG 3 cut(s) 487, 831, 1132
Cac8I GCNNGC 2 cut(s) 814, 867
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 181
Cfr42I CCGCGG 1 cut(s) 239
Csp6I GTAC 5 cut(s) 121, 250, 348, 900, 969
CviAII CATG 1 cut(s) 1010
CviQI GTAC 5 cut(s) 121, 250, 348, 900, 969
DdeI CTNAG 5 cut(s) 24, 126, 470, 720, 756
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 1122
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 15, 895
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 882
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 780
Eco81I CCTNAGG 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 894
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 3 cut(s) 176, 444, 726
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 15, 895
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 15, 895
FaeI CATG 1 cut(s) 1013
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 1009
FauI CCCGC 1 cut(s) 231
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 3 cut(s) 39, 466, 810
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 39, 466, 810
FspBI CTAG 2 cut(s) 627, 785
GluI GCNGC 3 cut(s) 39, 466, 810
HaeIII GGCC 2 cut(s) 931, 1124
HapII CCGG 2 cut(s) 56, 188
Hin1II CATG 1 cut(s) 1013
HinfI GANTC 8 cut(s) 284, 449, 638, 662, 674, 713, 791, 915
HpaII CCGG 2 cut(s) 56, 188
HphI GGTGA 3 cut(s) 63, 404, 978
Hpy166II GTNNAC 3 cut(s) 263, 383, 950
Hpy188III TCNNGA 1 cut(s) 785
Hpy8I GTNNAC 3 cut(s) 263, 383, 950
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 589, 900, 921
HpyCH4III ACNGT 3 cut(s) 425, 482, 544
HpyCH4IV ACGT 3 cut(s) 316, 379, 967
HpyF3I CTNAG 5 cut(s) 24, 126, 470, 720, 756
HpySE526I ACGT 3 cut(s) 316, 379, 967
Hsp92II CATG 1 cut(s) 1013
KpnI GGTACC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 583
KspI CCGCGG 1 cut(s) 239
Kzo9I GATC 1 cut(s) 583
LguI GCTCTTC 1 cut(s) 125
Lsp1109I GCAGC 2 cut(s) 25, 796
LweI GCATC 2 cut(s) 677, 852
MaeI CTAG 2 cut(s) 627, 785
MaeII ACGT 3 cut(s) 316, 379, 967
MaeIII GTNAC 3 cut(s) 482, 700, 984
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 5 cut(s) 142, 217, 487, 786, 924
MhlI GDGCHC 4 cut(s) 177, 265, 385, 952
MlsI TGGCCA 1 cut(s) 1124
MluCI AATT 5 cut(s) 86, 657, 838, 1026, 1066
MluNI TGGCCA 1 cut(s) 1124
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 1124
MscI TGGCCA 1 cut(s) 1124
MseI TTAA 5 cut(s) 105, 765, 923, 938, 959
Msp20I TGGCCA 1 cut(s) 1124
MspA1I CMGCKG 1 cut(s) 238
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 2 cut(s) 56, 188
MspR9I CCNGG 4 cut(s) 57, 178, 446, 728
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 3 cut(s) 178, 446, 728
MvnI CGCG 1 cut(s) 238
NciI CCSGG 1 cut(s) 57
NdeII GATC 1 cut(s) 583
NlaIII CATG 1 cut(s) 1013
NlaIV GGNNCC 4 cut(s) 182, 349, 517, 817
NmuCI GTSAC 2 cut(s) 482, 984
PasI CCCWGGG 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 125
PctI GAATGC 1 cut(s) 611
PfeI GAWTC 7 cut(s) 284, 449, 638, 662, 713, 791, 915
PkrI GCNGC 3 cut(s) 40, 467, 811
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PpuMI RGGWCCY 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 3 cut(s) 176, 444, 726
PspGI CCWGG 3 cut(s) 176, 444, 726
PspN4I GGNNCC 4 cut(s) 182, 349, 517, 817
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 5 cut(s) 122, 251, 349, 901, 970
RsaNI GTAC 5 cut(s) 121, 250, 348, 900, 969
SacII CCGCGG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 5 cut(s) 105, 765, 923, 938, 959
SatI GCNGC 3 cut(s) 39, 466, 810
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 4 cut(s) 57, 178, 446, 728
SduI GDGCHC 4 cut(s) 177, 265, 385, 952
SfaNI GCATC 2 cut(s) 677, 852
Sfr303I CCGCGG 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 239
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 3 cut(s) 104, 520, 879
SmoI CTYRAG 3 cut(s) 104, 520, 879
Sse9I AATT 5 cut(s) 86, 657, 838, 1026, 1066
SsiI CCGC 3 cut(s) 236, 238, 466
SspI AATATT 1 cut(s) 1084
SspMI CTAG 2 cut(s) 627, 785
StyD4I CCNGG 4 cut(s) 55, 176, 444, 726
StyI CCWWGG 2 cut(s) 15, 895
TaaI ACNGT 3 cut(s) 425, 482, 544
TaiI ACGT 3 cut(s) 319, 382, 970
TaqI TCGA 4 cut(s) 47, 171, 860, 910
TaqII GACCGA 1 cut(s) 92
TasI AATT 5 cut(s) 86, 657, 838, 1026, 1066
TauI GCSGC 1 cut(s) 468
TfiI GAWTC 7 cut(s) 284, 449, 638, 662, 713, 791, 915
Tru1I TTAA 5 cut(s) 105, 765, 923, 938, 959
Tru9I TTAA 5 cut(s) 105, 765, 923, 938, 959
TscAI CASTG 3 cut(s) 487, 831, 1132
TseFI GTSAC 2 cut(s) 482, 984
TseI GCWGC 2 cut(s) 38, 809
Tsp45I GTSAC 2 cut(s) 482, 984
TspGWI ACGGA 2 cut(s) 479, 793
TspRI CASTG 3 cut(s) 487, 831, 1132
Vha464I CTTAAG 1 cut(s) 104
VneI GTGCAC 3 cut(s) 261, 381, 948
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 894
XapI RAATTY 1 cut(s) 1066
XbaI TCTAGA 1 cut(s) 784
XspI CTAG 2 cut(s) 627, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.