AT2G27590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012214
Physical Location & Seq
Reverse (-)
11777554 .. 11779912
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27590.1

Sequence Viewer

Length: 1119 bp
ATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGTGAATATTCGAATGATGCTGAAGATTTCTACGATCAACACCCGCCGGCTGTTGCCTCCGTCGACGAAGAAGATGAAGAAAACTCTGACGAAGAAGAAGAAGAAAATGATGGAAACGAATCATCGGATTTGCCTTCAAAGTTTCTCCTTTACCAACAATCCGTTCAGTCACCAAAAGGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTTTCCATTTCCAAGAAGATTTCTGCGGCACTGCTCTTTTAAGTGCGGAGTGGCTGAAGACTGACACTAGACGGACTGCTATAGGGCTTGATTTTGATCTTGAGGCGTTAGAATGGTGTATGGATAACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTCCATGGGAATGTTTTAACTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAATATCAGCTTGGATGATGGTGATGATAATGAAGATTTGGCTGATCCGAGTGTTGTCGAATCTTTAGAGAAAGATGGACCTGATTCGTTGCCAAAGAGGGATATTGTGTGTGCTTTTAATTTTAGTTGTTGTTGTCTCCACAAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGACGCTTTGTCTAAGAAAGGTGGTATCTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAGGGACAGTTGAAGCTTCAACGGAAATTCCCTAATTTCACGTATACATGGGAGCAGGCTGAGTTTGATATTTTAAGCCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAACAGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTGCCGGAGATAAAGGATTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGACGCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAAGTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

42.89

Weight (kDa)

5.12

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 34
AccI GTMKAC 2 cut(s) 105, 800
AciI CCGC 5 cut(s) 86, 300, 320, 835, 1106
AclWI GGATC 2 cut(s) 554, 854
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 3 cut(s) 84, 350, 851
AcvI CACGTG 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 1 cut(s) 1052
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 6 cut(s) 180, 435, 685, 769, 776, 1073
AhdI GACNNNNNGTC 1 cut(s) 703
AjiI CACGTC 2 cut(s) 427, 1040
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AleI CACNNNNGTG 1 cut(s) 42
AluBI AGCT 7 cut(s) 508, 525, 772, 909, 956, 966, 1068
AluI AGCT 7 cut(s) 508, 525, 772, 909, 956, 966, 1068
Alw26I GTCTC 3 cut(s) 216, 656, 907
AlwI GGATC 2 cut(s) 554, 854
ApoI RAATTY 1 cut(s) 782
AspS9I GGNCC 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 56, 204, 548, 854
AsuII TTCGAA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 593
BbrPI CACGTG 1 cut(s) 695
BbsI GAAGAC 2 cut(s) 274, 338
BbvCI CCTCAGC 1 cut(s) 756
BccI CCATC 5 cut(s) 146, 527, 584, 724, 1016
BcoDI GTCTC 3 cut(s) 216, 656, 907
BfaI CTAG 2 cut(s) 342, 1117
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 301, 835
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 2 cut(s) 302, 836
Bme18I GGWCC 1 cut(s) 593
BmeRI GACNNNNNGTC 1 cut(s) 703
BmgBI CACGTC 2 cut(s) 427, 1040
BmgT120I GGNCC 1 cut(s) 593
BmsI GCATC 1 cut(s) 49
BoxI GACNNNNGTC 1 cut(s) 919
BpiI GAAGAC 2 cut(s) 274, 338
BpmI CTGGAG 1 cut(s) 931
Bpu10I CCTNAGC 1 cut(s) 756
Bpu1102I GCTNAGC 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 395, 494
BsaAI YACGTR 2 cut(s) 695, 798
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 923
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 535
BseJI GATNNNNATC 1 cut(s) 369
BseMI GCAATG 1 cut(s) 923
BseMII CTCAG 4 cut(s) 747, 807, 981, 997
BseRI GAGGAG 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 956
BsgI GTGCAG 1 cut(s) 839
BsiSI CCGG 3 cut(s) 89, 929, 995
BslFI GGGAC 1 cut(s) 774
BsmAI GTCTC 3 cut(s) 216, 656, 907
BsmFI GGGAC 1 cut(s) 774
BsmI GAATGC 2 cut(s) 694, 1096
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 4 cut(s) 76, 370, 559, 846
Bsp1720I GCTNAGC 1 cut(s) 480
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 5 cut(s) 86, 300, 320, 835, 1106
BspCNI CTCAG 4 cut(s) 748, 808, 980, 996
BspPI GGATC 2 cut(s) 554, 854
BspT104I TTCGAA 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 4 cut(s) 76, 370, 559, 846
BssNAI GTATAC 1 cut(s) 801
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 451
Bst1107I GTATAC 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 765, 918, 1077
BstACI GRCGYC 1 cut(s) 31
BstBAI YACGTR 2 cut(s) 695, 798
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 90, 813
BstDEI CTNAG 6 cut(s) 480, 708, 756, 816, 967, 983
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 4 cut(s) 79, 373, 562, 849
BstMAI GTCTC 3 cut(s) 216, 656, 907
BstMBI GATC 4 cut(s) 76, 370, 559, 846
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstPAI GACNNNNGTC 1 cut(s) 919
BstSFI CTRYAG 1 cut(s) 354
BstV2I GAAGAC 2 cut(s) 274, 338
BstZ17I GTATAC 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 451
BtrI CACGTC 2 cut(s) 427, 1040
BtsCI GGATG 1 cut(s) 535
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 303, 1082
Cac8I GCNNGC 2 cut(s) 90, 813
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 2 cut(s) 707, 1007
Csp6I GTAC 1 cut(s) 1051
CviAII CATG 4 cut(s) 452, 503, 804, 893
CviQI GTAC 1 cut(s) 1051
DdeI CTNAG 6 cut(s) 480, 708, 756, 816, 967, 983
DpnI GATC 4 cut(s) 78, 372, 561, 848
DpnII GATC 4 cut(s) 76, 370, 559, 846
DriI GACNNNNNGTC 1 cut(s) 703
Eam1105I GACNNNNNGTC 1 cut(s) 703
Eco130I CCWWGG 1 cut(s) 451
Eco32I GATATC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 3 cut(s) 84, 350, 851
Eco72I CACGTG 1 cut(s) 695
EcoRV GATATC 1 cut(s) 1045
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 455, 506, 807, 896
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 1 cut(s) 774
FatI CATG 4 cut(s) 451, 502, 803, 892
FauI CCCGC 1 cut(s) 93
FblI GTMKAC 2 cut(s) 105, 800
Fnu4HI GCNGC 2 cut(s) 301, 835
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 301, 835
FspBI CTAG 2 cut(s) 342, 1117
GluI GCNGC 2 cut(s) 301, 835
GsaI CCCAGC 1 cut(s) 960
GsuI CTGGAG 1 cut(s) 931
HapII CCGG 3 cut(s) 89, 929, 995
HgaI GACGC 2 cut(s) 707, 1007
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 4 cut(s) 455, 506, 807, 896
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 5 cut(s) 161, 575, 599, 886, 1082
HpaII CCGG 3 cut(s) 89, 929, 995
HphI GGTGA 4 cut(s) 56, 204, 548, 854
Hpy166II GTNNAC 3 cut(s) 106, 413, 801
Hpy188I TCNGA 8 cut(s) 130, 169, 424, 564, 667, 870, 986, 1006
Hpy188III TCNNGA 6 cut(s) 374, 435, 473, 685, 727, 1063
Hpy8I GTNNAC 3 cut(s) 106, 413, 801
Hpy99I CGWCG 4 cut(s) 33, 36, 107, 110
HpyAV CCTTC 2 cut(s) 186, 875
HpyCH4III ACNGT 3 cut(s) 765, 918, 1077
HpyCH4IV ACGT 5 cut(s) 31, 426, 694, 797, 1039
HpyCH4V TGCA 3 cut(s) 238, 692, 856
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 6 cut(s) 480, 708, 756, 816, 967, 983
HpySE526I ACGT 5 cut(s) 31, 426, 694, 797, 1039
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 4 cut(s) 455, 506, 807, 896
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 76, 370, 559, 846
LmnI GCTCC 1 cut(s) 808
LpnPI CCDG 9 cut(s) 102, 609, 797, 895, 942, 942, 964, 1008, 1020
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 342, 1117
MaeII ACGT 5 cut(s) 31, 426, 694, 797, 1039
MaeIII GTNAC 3 cut(s) 210, 230, 695
MalI GATC 4 cut(s) 78, 372, 561, 848
MboI GATC 4 cut(s) 76, 370, 559, 846
MluCI AATT 3 cut(s) 634, 782, 790
MnlI CCTC 8 cut(s) 109, 370, 469, 480, 606, 737, 751, 943
MroNI GCCGGC 1 cut(s) 88
MseI TTAA 5 cut(s) 251, 314, 464, 633, 830
MslI CAYNNNNRTG 2 cut(s) 42, 456
MspI CCGG 3 cut(s) 89, 929, 995
Mva1269I GAATGC 2 cut(s) 694, 1096
MwoI GCNNNNNNNGC 1 cut(s) 698
NaeI GCCGGC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 451
NdeII GATC 4 cut(s) 76, 370, 559, 846
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 4 cut(s) 455, 506, 807, 896
NmuCI GTSAC 2 cut(s) 210, 695
NspV TTCGAA 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 42
PctI GAATGC 2 cut(s) 694, 1096
PdiI GCCGGC 1 cut(s) 90
PfeI GAWTC 5 cut(s) 161, 575, 599, 886, 1082
PkrI GCNGC 2 cut(s) 302, 836
PmaCI CACGTG 1 cut(s) 695
PmlI CACGTG 1 cut(s) 695
Ppu21I YACGTR 2 cut(s) 695, 798
PshAI GACNNNNGTC 1 cut(s) 919
PspCI CACGTG 1 cut(s) 695
PspFI CCCAGC 1 cut(s) 956
PspPI GGNCC 1 cut(s) 593
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
RsaI GTAC 1 cut(s) 1052
RsaNI GTAC 1 cut(s) 1051
RseI CAYNNNNRTG 2 cut(s) 42, 456
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 5 cut(s) 251, 314, 464, 633, 830
SatI GCNGC 2 cut(s) 301, 835
Sau3AI GATC 4 cut(s) 76, 370, 559, 846
Sau96I GGNCC 1 cut(s) 593
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 53
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 2 cut(s) 42, 456
SmlI CTYRAG 2 cut(s) 374, 473
SmoI CTYRAG 2 cut(s) 374, 473
Sse9I AATT 3 cut(s) 634, 782, 790
SsiI CCGC 5 cut(s) 86, 300, 320, 835, 1106
SspI AATATT 1 cut(s) 50
SspMI CTAG 2 cut(s) 342, 1117
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 765, 918, 1077
TaiI ACGT 5 cut(s) 34, 429, 697, 800, 1042
TaqI TCGA 4 cut(s) 28, 53, 105, 573
TasI AATT 3 cut(s) 634, 782, 790
TauI GCSGC 2 cut(s) 303, 837
TfiI GAWTC 5 cut(s) 161, 575, 599, 886, 1082
Tru1I TTAA 5 cut(s) 251, 314, 464, 633, 830
Tru9I TTAA 5 cut(s) 251, 314, 464, 633, 830
TscAI CASTG 2 cut(s) 310, 1082
TseFI GTSAC 2 cut(s) 210, 695
Tsp45I GTSAC 2 cut(s) 210, 695
TspDTI ATGAA 3 cut(s) 132, 561, 891
TspGWI ACGGA 4 cut(s) 91, 193, 361, 793
TspRI CASTG 2 cut(s) 310, 1082
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 105, 800
XspI CTAG 2 cut(s) 342, 1117
ZraI GACGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.