Rroxscaffold_1G00036840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012214
Physical Location & Seq
Reverse (-)
53779855 .. 53784739
4885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036840.1

Sequence Viewer

Length: 1188 bp
ATGAGAAAGCGAGACAAGAAACAGAGACACCAACACAGAACCTCCCACAGAGCTGCCTTTCACTACACTGAAGAAGGCGAAGAAGGTGTCAGCTTTGAAAGTCATGCTGCTTCCAAGTTCAGTGTTTCTGAAGAAGAAGAAGTAGAAAAAAAAGACGAAGATGAAGAAGAAGACGAAGACGAAGCAGAGATTGAGGAAACAGAGGAAACTGATAAATACCCATCAAAAGATATGCCCTCAAAGTTTCTTCTTTATCAACAATCTGTGCAGTCGCCAAAAGGAGACATAAGCTATTTGCAGAAGTTCTTTTTGATTTATGTGGGTGGGAGGCAACCTCTCCATCTCCAAGAAGATTTTTGTGGCACTGCTCTTCTTAGTGCAGAATGGCTCCGCACAGACTCCAGAAGGACTGCTGTAGGGTTGGATTTGGACCTTGAAGCGCTAGAATGGTGCATGGAGAACAACATAAATAAGATAGGGTCTGATGGGTATTCCAGAATATCCCTCTTCCATGGGAATGTCTTGCAACCTCTTGAGGCCAAGCTAATTGAGTTTGAGCCCCAGGAGCTGATAAGAAACATTTCACTCTCTGAAAACAAAGATGTTTCTGAGAGTGGTGGACTTGAAGGGGGTTCTTCTTCTCCACATAATGAGAAGTACATGAGGAACCATCCATTGCCTGCTAGAGACATAGTGTGTGCTTTTAACTACAGCTGTTGCTGTCTTCATCGACGTGCTGAACTGGTTTTGTATTTCAAGCATGTTCTTGATGTCTTGTCAAAGAAAGGTGGAATATTTGTAATGGATTTATATGGTGGTACATCATCGGAGTGCAAGCTGAGGCTTCAAAGGAAATTTGCCAATTTCACGTATTTTTGGGAGCAAGCTGAATTTGATATCATTGAGCGCAAAACAAGGATTAGTCTCCATTTCCATCTCAAAAGGCAGCAGAAGAAACTTCGACATGCATTTTCATACAGCTGGAGGCTGTGGTCATTGCCTGAGATTAAGGACTGCTTAGAAGAGGCAGGTTTTCAATCTGTCCACTTTTGGTTGCGCGAGATGCAAGACACCAGAGAAATCAGAAAAACAGAAGGTTTTGGTGTTGGGCGAGACATAAAATATGAAGAGGTTACAAAATTTCAGCAACAAGATGCTTGGAATGCATATGTCGTAGCTGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

46.15

Weight (kDa)

5.55

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1019
AccII CGCG 1 cut(s) 1059
AciI CCGC 1 cut(s) 391
AcsI RAATTY 3 cut(s) 854, 890, 1139
AcuI CTGAAG 2 cut(s) 90, 150
AfaI GTAC 2 cut(s) 659, 820
AfeI AGCGCT 1 cut(s) 441
AgsI TTSAA 6 cut(s) 98, 437, 626, 757, 848, 1037
AjiI CACGTC 1 cut(s) 734
AjnI CCWGG 1 cut(s) 561
Alw26I GTCTC 6 cut(s) 6, 19, 276, 681, 929, 1107
AlwNI CAGNNNCTG 1 cut(s) 568
Aor51HI AGCGCT 1 cut(s) 441
AoxI GGCC 1 cut(s) 537
ApeKI GCWGC 3 cut(s) 53, 107, 946
ApoI RAATTY 3 cut(s) 854, 890, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 580
AspLEI GCGC 3 cut(s) 442, 909, 1059
AspS9I GGNCC 1 cut(s) 430
AvaII GGWCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 561
BbsI GAAGAC 3 cut(s) 177, 183, 716
BbvCI CCTCAGC 1 cut(s) 839
BbvI GCAGC 3 cut(s) 40, 94, 958
BccI CCATC 5 cut(s) 229, 348, 479, 678, 942
BciT130I CCWGG 1 cut(s) 563
BcoDI GTCTC 6 cut(s) 6, 19, 276, 681, 929, 1107
BfaI CTAG 3 cut(s) 443, 684, 1186
BfmI CTRYAG 2 cut(s) 414, 709
BfoI RGCGCY 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 1019
BisI GCNGC 3 cut(s) 54, 108, 947
BlsI GCNGC 3 cut(s) 55, 109, 948
Bme1390I CCNGG 1 cut(s) 563
Bme18I GGWCC 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 389, 668
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 2 cut(s) 1053, 1144
BpiI GAAGAC 3 cut(s) 177, 183, 716
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 2 cut(s) 385, 1003
Bpu10I CCTNAGC 1 cut(s) 839
BpuEI CTTGAG 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 870
BsaJI CCNNGG 2 cut(s) 511, 561
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 1 cut(s) 747
Bse3DI GCAATG 2 cut(s) 674, 995
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 2 cut(s) 511, 561
BseGI GGATG 1 cut(s) 670
BseMI GCAATG 2 cut(s) 674, 995
BseMII CTCAG 3 cut(s) 600, 830, 993
BseNI ACTGG 1 cut(s) 747
BseXI GCAGC 3 cut(s) 40, 94, 958
BsgI GTGCAG 2 cut(s) 287, 399
Bsh1236I CGCG 1 cut(s) 1059
BshFI GGCC 1 cut(s) 539
BsmAI GTCTC 6 cut(s) 6, 19, 276, 681, 929, 1107
BsmI GAATGC 1 cut(s) 1168
BsnI GGCC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 561
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 1 cut(s) 391
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 3 cut(s) 601, 831, 994
BspFNI CGCG 1 cut(s) 1059
BspLI GGNNCC 2 cut(s) 389, 668
BspMI ACCTGC 1 cut(s) 1019
BspQI GCTCTTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 674, 995
BsrI ACTGG 1 cut(s) 747
BssECI CCNNGG 2 cut(s) 511, 561
BssT1I CCWWGG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 563
Bst6I CTCTTC 4 cut(s) 375, 512, 1017, 1122
BstBAI YACGTR 1 cut(s) 870
BstC8I GCNNGC 3 cut(s) 681, 836, 885
BstDEI CTNAG 5 cut(s) 374, 609, 839, 1002, 1018
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 1 cut(s) 670
BstFNI CGCG 1 cut(s) 1059
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 3 cut(s) 442, 909, 1059
BstMAI GTCTC 6 cut(s) 6, 19, 276, 681, 929, 1107
BstMWI GCNNNNNNNGC 3 cut(s) 565, 1063, 1163
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 2 cut(s) 764, 968
BstSCI CCNGG 1 cut(s) 561
BstSFI CTRYAG 2 cut(s) 414, 709
BstUI CGCG 1 cut(s) 1059
BstV1I GCAGC 3 cut(s) 40, 94, 958
BstV2I GAAGAC 3 cut(s) 177, 183, 716
BsuRI GGCC 1 cut(s) 539
BtgI CCRYGG 1 cut(s) 511
BtrI CACGTC 1 cut(s) 734
BtsCI GGATG 1 cut(s) 670
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 3 cut(s) 66, 127, 363
BveI ACCTGC 1 cut(s) 1019
Cac8I GCNNGC 3 cut(s) 681, 836, 885
CaiI CAGNNNCTG 1 cut(s) 568
CfoI GCGC 3 cut(s) 442, 909, 1059
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 658, 819
CviAII CATG 6 cut(s) 104, 454, 512, 661, 761, 965
CviQI GTAC 2 cut(s) 658, 819
DdeI CTNAG 5 cut(s) 374, 609, 839, 1002, 1018
Eam1104I CTCTTC 4 cut(s) 375, 512, 1017, 1122
EarI CTCTTC 4 cut(s) 375, 512, 1017, 1122
Eco130I CCWWGG 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 561
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 1 cut(s) 430
Eco47III AGCGCT 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 90, 150
EcoRII CCWGG 1 cut(s) 561
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 1 cut(s) 511
EcoT22I ATGCAT 2 cut(s) 970, 1168
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 6 cut(s) 107, 457, 515, 664, 764, 968
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FatI CATG 6 cut(s) 103, 453, 511, 660, 760, 964
FauNDI CATATG 1 cut(s) 1168
Fnu4HI GCNGC 3 cut(s) 54, 108, 947
FokI GGATG 1 cut(s) 657
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 3 cut(s) 54, 108, 947
FspBI CTAG 3 cut(s) 443, 684, 1186
GlaI GCGC 3 cut(s) 441, 908, 1058
GluI GCNGC 3 cut(s) 54, 108, 947
GsuI CTGGAG 2 cut(s) 385, 1003
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 1 cut(s) 539
HhaI GCGC 3 cut(s) 442, 909, 1059
Hin1II CATG 6 cut(s) 107, 457, 515, 664, 764, 968
Hin6I GCGC 3 cut(s) 440, 907, 1057
HinP1I GCGC 3 cut(s) 440, 907, 1057
HinfI GANTC 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 620, 1045
Hpy188I TCNGA 6 cut(s) 130, 484, 592, 610, 829, 1085
Hpy188III TCNNGA 4 cut(s) 402, 495, 533, 767
Hpy8I GTNNAC 2 cut(s) 620, 1045
Hpy99I CGWCG 1 cut(s) 735
HpyAV CCTTC 5 cut(s) 68, 77, 399, 620, 1088
HpyCH4IV ACGT 2 cut(s) 733, 869
HpyCH4V TGCA 9 cut(s) 268, 298, 380, 453, 526, 834, 968, 1066, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 565, 1063, 1163
HpyF3I CTNAG 5 cut(s) 374, 609, 839, 1002, 1018
HpySE526I ACGT 2 cut(s) 733, 869
Hsp92II CATG 6 cut(s) 107, 457, 515, 664, 764, 968
HspAI GCGC 3 cut(s) 440, 907, 1057
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 3 cut(s) 393, 565, 880
Lsp1109I GCAGC 3 cut(s) 40, 94, 958
LweI GCATC 2 cut(s) 1053, 1144
MaeI CTAG 3 cut(s) 443, 684, 1186
MaeII ACGT 2 cut(s) 733, 869
MaeIII GTNAC 1 cut(s) 1132
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 5 cut(s) 546, 854, 862, 890, 1139
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 402
Mph1103I ATGCAT 2 cut(s) 970, 1168
MroXI GAANNNNTTC 1 cut(s) 580
MseI TTAA 2 cut(s) 705, 1008
MslI CAYNNNNRTG 3 cut(s) 516, 732, 829
MspA1I CMGCKG 2 cut(s) 714, 981
MspR9I CCNGG 1 cut(s) 563
Mva1269I GAATGC 1 cut(s) 1168
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 1059
MwoI GCNNNNNNNGC 3 cut(s) 565, 1063, 1163
NcoI CCATGG 1 cut(s) 511
NdeI CATATG 1 cut(s) 1168
NlaIII CATG 6 cut(s) 107, 457, 515, 664, 764, 968
NlaIV GGNNCC 2 cut(s) 389, 668
NsiI ATGCAT 2 cut(s) 970, 1168
NspI RCATGY 2 cut(s) 764, 968
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 1168
PdmI GAANNNNTTC 1 cut(s) 580
PkrI GCNGC 3 cut(s) 55, 109, 948
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 870
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 389, 668
PspPI GGNCC 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 568
PvuII CAGCTG 2 cut(s) 714, 981
RsaI GTAC 2 cut(s) 659, 820
RsaNI GTAC 2 cut(s) 658, 819
RseI CAYNNNNRTG 3 cut(s) 516, 732, 829
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 705, 1008
SatI GCNGC 3 cut(s) 54, 108, 947
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 563
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 2 cut(s) 1053, 1144
SfcI CTRYAG 2 cut(s) 414, 709
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 3 cut(s) 516, 732, 829
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 5 cut(s) 546, 854, 862, 890, 1139
SsiI CCGC 1 cut(s) 391
SspI AATATT 1 cut(s) 795
SspMI CTAG 3 cut(s) 443, 684, 1186
StyD4I CCNGG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 511
TaiI ACGT 2 cut(s) 736, 872
TaqI TCGA 2 cut(s) 730, 961
TasI AATT 5 cut(s) 546, 854, 862, 890, 1139
TatI WGTACW 1 cut(s) 657
Tru1I TTAA 2 cut(s) 705, 1008
Tru9I TTAA 2 cut(s) 705, 1008
TscAI CASTG 3 cut(s) 73, 127, 370
TseI GCWGC 3 cut(s) 53, 107, 946
TspDTI ATGAA 4 cut(s) 177, 716, 963, 1140
TspRI CASTG 3 cut(s) 73, 127, 370
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 3 cut(s) 854, 890, 1139
XceI RCATGY 2 cut(s) 764, 968
XmnI GAANNNNTTC 1 cut(s) 580
XspI CTAG 3 cut(s) 443, 684, 1186
Zsp2I ATGCAT 2 cut(s) 970, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.