Rw5G027450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012214
Physical Location & Seq
Forward (+)
40589832 .. 40593390
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027450.1

Sequence Viewer

Length: 1191 bp
ATGGGAAAGCGAGACAAGAAACAGAGACACCAACACAGAACCTCCCACAGAGCTGCCTTTCACTACACTGAAGAAGGTGAAGAAGGTGTCAGCTTTGAAAGTCATGCTGCTTCCAAGTTCAGTCTTTCTGAAGAAGAAGAAGAAGTAGAAAAAAAAGACAAAGATGAAGAAGAAGACGAAGACGAAGCAGAGATTGAGGAAACAGAGGAAACTGATAAATACCCATCAAAAGATATGCCCTCAAAGTTTCTTCTTTATCAACAATCTGTGCAGTCGCCAAAAGGAGATATAAGCTATTTGCAGAAGTTCTTTTTGATGTATGTGGGTGGGAGGCAACCTCTCCATCTCCAAGAAGATTTTTGTGGCACTGCTCTTCTTAGTGCAGAATGGCTCCGCACGGACTCTAGAAGGACTGCTGTAGGGTTGGATTTGGACCTTGAAGCGCTAGAATGGTGCATGGAGAACAACATAAATAAGATAGGGTCTGATGGGTATTCCAGAATATCCCTCTTCCATGGGAATGTCTTGCAGCCTCTTGAGGCCAAGCTAATTGAGTTTGAGGCCCAGGAGCTGATAAGAAACATTTCACTCTCTGAAAACAAAGATGTTTCTGAGAGTGGTGGACTTGAAGGGGGTTCTTCTTCTCCACATAATGAGAAGTACATGAGGAACCATCCATTGCCTGCTAGAGACATAGTGTGTGCTTTTAACTACAGCTGTTGCTGTCTTCATCGACGTGCTGAACTGGTTTTTTATTTCAAGCATGTTCTTGATGTCTTGTCAAAGAAAGGTGGAATATTTGTAATGGATTTATATGGTGGTACATCATCAGAGTGCAAGCTAAGGCTTCAAAGGAAATTTGCCAATTTCACGTATTTTTGGGAGCAAGCTGAATTTGATATCATTGAGCGCAAAACAAGGATTAGTCTCCATTTCCATCTCAAAAAGCAGCAGAAGAAACTTCGACATGCATTTTCGTACAGCTGGAGGCTGTGGTCATTGCCTGAGATTAAGGACTGCTTAGAAGAGGCAGGTTTTCAATCTGTCCACTTTTGGTTGCGCGAGATGCAAGACACCAGAGAAATCAGAAAAACAGAAGGTTTTGGTGTTGGGCGAGACATAAAATATGAAGAGGTTACAAAATTTCAGCAACAAGATGCTTGGAATGCATATGTCGTAGCTGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

46.19

Weight (kDa)

5.55

Isoelectric Point (pI)

66.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1022
AccII CGCG 1 cut(s) 1062
AciI CCGC 1 cut(s) 394
AcsI RAATTY 3 cut(s) 857, 893, 1142
AcuI CTGAAG 2 cut(s) 90, 150
AfaI GTAC 3 cut(s) 662, 823, 980
AfeI AGCGCT 1 cut(s) 444
AgsI TTSAA 6 cut(s) 98, 440, 629, 760, 851, 1040
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 1 cut(s) 564
Alw26I GTCTC 5 cut(s) 6, 19, 684, 932, 1110
AlwNI CAGNNNCTG 1 cut(s) 571
Aor51HI AGCGCT 1 cut(s) 444
AoxI GGCC 2 cut(s) 540, 561
ApeKI GCWGC 4 cut(s) 53, 107, 529, 949
ApoI RAATTY 3 cut(s) 857, 893, 1142
Asp700I GAANNNNTTC 1 cut(s) 583
AspLEI GCGC 3 cut(s) 445, 912, 1062
AspS9I GGNCC 2 cut(s) 433, 562
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 433
BbsI GAAGAC 3 cut(s) 180, 186, 719
BbvI GCAGC 4 cut(s) 40, 94, 541, 961
BccI CCATC 5 cut(s) 232, 351, 482, 681, 945
BciT130I CCWGG 1 cut(s) 566
BcoDI GTCTC 5 cut(s) 6, 19, 684, 932, 1110
BfaI CTAG 4 cut(s) 405, 446, 687, 1189
BfmI CTRYAG 2 cut(s) 417, 712
BfoI RGCGCY 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 1022
BisI GCNGC 4 cut(s) 54, 108, 530, 950
BlsI GCNGC 4 cut(s) 55, 109, 531, 951
Bme1390I CCNGG 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 2 cut(s) 433, 562
BmiI GGNNCC 2 cut(s) 392, 671
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 2 cut(s) 1056, 1147
BpiI GAAGAC 3 cut(s) 180, 186, 719
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpmI CTGGAG 1 cut(s) 1006
Bpu10I CCTNAGC 1 cut(s) 842
BpuEI CTTGAG 1 cut(s) 557
BsaAI YACGTR 1 cut(s) 873
BsaJI CCNNGG 2 cut(s) 514, 564
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 1 cut(s) 750
Bse3DI GCAATG 2 cut(s) 677, 998
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 514, 564
BseGI GGATG 1 cut(s) 673
BseMI GCAATG 2 cut(s) 677, 998
BseMII CTCAG 2 cut(s) 603, 996
BseNI ACTGG 1 cut(s) 750
BseXI GCAGC 4 cut(s) 40, 94, 541, 961
BsgI GTGCAG 2 cut(s) 290, 402
Bsh1236I CGCG 1 cut(s) 1062
BshFI GGCC 2 cut(s) 542, 563
BsmAI GTCTC 5 cut(s) 6, 19, 684, 932, 1110
BsmI GAATGC 1 cut(s) 1171
BsnI GGCC 2 cut(s) 542, 563
Bsp19I CCATGG 1 cut(s) 514
BspACI CCGC 1 cut(s) 394
BspANI GGCC 2 cut(s) 542, 563
BspCNI CTCAG 2 cut(s) 604, 997
BspFNI CGCG 1 cut(s) 1062
BspLI GGNNCC 2 cut(s) 392, 671
BspMI ACCTGC 1 cut(s) 1022
BspQI GCTCTTC 1 cut(s) 378
BsrDI GCAATG 2 cut(s) 677, 998
BsrI ACTGG 1 cut(s) 750
BssECI CCNNGG 2 cut(s) 514, 564
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 566
Bst6I CTCTTC 4 cut(s) 378, 515, 1020, 1125
BstBAI YACGTR 1 cut(s) 873
BstC8I GCNNGC 3 cut(s) 684, 839, 888
BstDEI CTNAG 5 cut(s) 377, 612, 842, 1005, 1021
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 1 cut(s) 1062
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 3 cut(s) 445, 912, 1062
BstMAI GTCTC 5 cut(s) 6, 19, 684, 932, 1110
BstMWI GCNNNNNNNGC 2 cut(s) 1066, 1166
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 2 cut(s) 767, 971
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 2 cut(s) 417, 712
BstUI CGCG 1 cut(s) 1062
BstV1I GCAGC 4 cut(s) 40, 94, 541, 961
BstV2I GAAGAC 3 cut(s) 180, 186, 719
BsuRI GGCC 2 cut(s) 542, 563
BtgI CCRYGG 1 cut(s) 514
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 66, 366
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 3 cut(s) 684, 839, 888
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 3 cut(s) 445, 912, 1062
Cfr13I GGNCC 2 cut(s) 433, 562
Csp6I GTAC 3 cut(s) 661, 822, 979
CviAII CATG 6 cut(s) 104, 457, 515, 664, 764, 968
CviQI GTAC 3 cut(s) 661, 822, 979
DdeI CTNAG 5 cut(s) 377, 612, 842, 1005, 1021
Eam1104I CTCTTC 4 cut(s) 378, 515, 1020, 1125
EarI CTCTTC 4 cut(s) 378, 515, 1020, 1125
Eco130I CCWWGG 1 cut(s) 514
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 433
Eco47III AGCGCT 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 90, 150
EcoRII CCWGG 1 cut(s) 564
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 2 cut(s) 973, 1171
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 6 cut(s) 107, 460, 518, 667, 767, 971
FalI AAGNNNNNCTT 2 cut(s) 1004, 1036
FatI CATG 6 cut(s) 103, 456, 514, 663, 763, 967
FauNDI CATATG 1 cut(s) 1171
Fnu4HI GCNGC 4 cut(s) 54, 108, 530, 950
FokI GGATG 1 cut(s) 660
Fsp4HI GCNGC 4 cut(s) 54, 108, 530, 950
FspBI CTAG 4 cut(s) 405, 446, 687, 1189
GlaI GCGC 3 cut(s) 444, 911, 1061
GluI GCNGC 4 cut(s) 54, 108, 530, 950
GsuI CTGGAG 1 cut(s) 1006
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 542, 563
HhaI GCGC 3 cut(s) 445, 912, 1062
Hin1II CATG 6 cut(s) 107, 460, 518, 667, 767, 971
Hin6I GCGC 3 cut(s) 443, 910, 1060
HinP1I GCGC 3 cut(s) 443, 910, 1060
HinfI GANTC 1 cut(s) 401
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 623, 1048
Hpy188I TCNGA 6 cut(s) 130, 487, 595, 613, 832, 1088
Hpy188III TCNNGA 4 cut(s) 405, 498, 536, 770
Hpy8I GTNNAC 2 cut(s) 623, 1048
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 5 cut(s) 68, 77, 402, 623, 1091
HpyCH4IV ACGT 2 cut(s) 736, 872
HpyCH4V TGCA 9 cut(s) 271, 301, 383, 456, 529, 837, 971, 1069, 1169
HpyF10VI GCNNNNNNNGC 2 cut(s) 1066, 1166
HpyF3I CTNAG 5 cut(s) 377, 612, 842, 1005, 1021
HpySE526I ACGT 2 cut(s) 736, 872
Hsp92II CATG 6 cut(s) 107, 460, 518, 667, 767, 971
HspAI GCGC 3 cut(s) 443, 910, 1060
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 3 cut(s) 396, 568, 883
LpnPI CCDG 9 cut(s) 511, 551, 578, 696, 731, 970, 1017, 1017, 1090
Lsp1109I GCAGC 4 cut(s) 40, 94, 541, 961
LweI GCATC 2 cut(s) 1056, 1147
MaeI CTAG 4 cut(s) 405, 446, 687, 1189
MaeII ACGT 2 cut(s) 736, 872
MaeIII GTNAC 1 cut(s) 1135
MluCI AATT 5 cut(s) 549, 857, 865, 893, 1142
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 405
Mph1103I ATGCAT 2 cut(s) 973, 1171
MroXI GAANNNNTTC 1 cut(s) 583
MseI TTAA 2 cut(s) 708, 1011
MslI CAYNNNNRTG 3 cut(s) 519, 735, 832
MspA1I CMGCKG 2 cut(s) 717, 984
MspR9I CCNGG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 1171
MvaI CCWGG 1 cut(s) 566
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 2 cut(s) 1066, 1166
NcoI CCATGG 1 cut(s) 514
NdeI CATATG 1 cut(s) 1171
NlaIII CATG 6 cut(s) 107, 460, 518, 667, 767, 971
NlaIV GGNNCC 2 cut(s) 392, 671
NsiI ATGCAT 2 cut(s) 973, 1171
NspI RCATGY 2 cut(s) 767, 971
PciSI GCTCTTC 1 cut(s) 378
PctI GAATGC 1 cut(s) 1171
PdmI GAANNNNTTC 1 cut(s) 583
PkrI GCNGC 4 cut(s) 55, 109, 531, 951
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
Ppu21I YACGTR 1 cut(s) 873
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 2 cut(s) 392, 671
PspPI GGNCC 2 cut(s) 433, 562
PstNI CAGNNNCTG 1 cut(s) 571
PvuII CAGCTG 2 cut(s) 717, 984
RsaI GTAC 3 cut(s) 662, 823, 980
RsaNI GTAC 3 cut(s) 661, 822, 979
RseI CAYNNNNRTG 3 cut(s) 519, 735, 832
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 2 cut(s) 708, 1011
SatI GCNGC 4 cut(s) 54, 108, 530, 950
Sau96I GGNCC 2 cut(s) 433, 562
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 566
SfaNI GCATC 2 cut(s) 1056, 1147
SfcI CTRYAG 2 cut(s) 417, 712
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 3 cut(s) 519, 735, 832
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 5 cut(s) 549, 857, 865, 893, 1142
SsiI CCGC 1 cut(s) 394
SspI AATATT 1 cut(s) 798
SspMI CTAG 4 cut(s) 405, 446, 687, 1189
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 514
TaiI ACGT 2 cut(s) 739, 875
TaqI TCGA 2 cut(s) 733, 964
TasI AATT 5 cut(s) 549, 857, 865, 893, 1142
TatI WGTACW 1 cut(s) 660
Tru1I TTAA 2 cut(s) 708, 1011
Tru9I TTAA 2 cut(s) 708, 1011
TscAI CASTG 2 cut(s) 73, 373
TseI GCWGC 4 cut(s) 53, 107, 529, 949
TspDTI ATGAA 3 cut(s) 180, 719, 1143
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 73, 373
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 3 cut(s) 857, 893, 1142
XbaI TCTAGA 1 cut(s) 404
XceI RCATGY 2 cut(s) 767, 971
XmnI GAANNNNTTC 1 cut(s) 583
XspI CTAG 4 cut(s) 405, 446, 687, 1189
Zsp2I ATGCAT 2 cut(s) 973, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.