FvH4_3g24630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012214
Physical Location & Seq
Forward (+)
17713840 .. 17718612
4773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24630.t2

Sequence Viewer

Length: 1203 bp
ATGGGAAAACGAGACAAGAAACAGAGACACCAACATAGAACCTCCCACAGAGCTGCCTATCACTACACTGACCAAGGTGAAGAAGGCGTCAGTTTCGAAAGTCATGCTGCTTCTAAGTTCAATCTTTCTGAAGAAGAAGAAGAAGATGATGAAGTAGAAGAAAAAGACCAAGATGAACAAGAAGAAGAAGAAGAAGAAGTAGAGACTAAGGACACTGATGAATACCCATCAAACGATATGCCCTCAAAGTTTCTTCTTTATCAACAATCTGTACAGTCGCCAAAAGGAGATATAAGCTATTTGCAGAAGTTCTTTCTGATGTATGTGGGTGGGAGGCAACCTCTCCATCTCCAGGAAGATTTTTGTGGCACTGCTCTTCTTAGTGCAGAATGGCTCCGCACAGACTCTAGAAGGACTGCTGTAGGGTTGGATTTGGATGTGGAAGCACTAGACTGGTGCATGGAGAACAACATTAATAAAATTGGGTCTGATGGGTATTCCAGAATTTCCCTCTTCCATGGGAATGTCTTGCAACCGCTCGAGGCCAAGCTGATTGAGTTTGAGCCCCAAGAGCTGATAAGAAATATTTCGCTCACTCAAAAGACAGATGTTCCTGAGAGTGGTGGACTTGATTCTGTTCCCAAAGGGGGTTCTTCTCCACATAAAGGGAAGTACATGAAGAACCATCCGTTGCCTGCTAGAGACATCGTGTGTGCTTTTAACTACAGCTGTTGCTGTCTCCATCAACGTGCTGAACTTGTTTTGTATTTCAAGCATGTTCTCAATGTCTTGTCAAAGAAAGGTGGAATATTTGTAATGGATTTATACGGCGGTACATCATCAGAGTGCAAGCTAAAGCTTCAAAGGAAATTTGCCAATTTCACGTATTTTTGGGAGCAAGCAGAATTCGATATCATTGAGCGCAAAACAAGGATTAGTCTCCATTTCCATCTCAAAAAGCAGCAGAAGAAACTTCGACATGCATTTTCGTACAGCTGGAGGCTGTGGTCATTGCCTGAGATTAAAGACTGCTTAAAAGAGGCAGGTTTTCAATCTATTCATTTTTGGTTGCGTGAGATGCAAGACACCAGAGAAATCAGAAAAACAGAAGGTTTTGGTGCTGGGCGAGACATAAAATATGAAGAGGTTACGAAATTTGAGCAACAAGATGCTTGGAATGCATATGTCGTAGCTGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

46.49

Weight (kDa)

5.6

Isoelectric Point (pI)

61.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1034
AccBSI CCGCTC 1 cut(s) 538
AciI CCGC 3 cut(s) 397, 536, 831
AcsI RAATTY 4 cut(s) 504, 869, 905, 1154
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 4 cut(s) 273, 674, 835, 992
AfiI CCNNNNNNNGG 4 cut(s) 352, 620, 647, 665
AgsI TTSAA 4 cut(s) 121, 772, 863, 1052
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 9 cut(s) 53, 297, 550, 574, 729, 853, 859, 996, 1193
AluI AGCT 9 cut(s) 53, 297, 550, 574, 729, 853, 859, 996, 1193
Alw26I GTCTC 7 cut(s) 6, 19, 197, 696, 743, 944, 1122
Ama87I CYCGRG 1 cut(s) 539
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 3 cut(s) 53, 107, 961
ApoI RAATTY 4 cut(s) 504, 869, 905, 1154
AseI ATTAAT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 586
AspLEI GCGC 1 cut(s) 924
AsuHPI GGTGA 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 539
BanII GRGCYC 1 cut(s) 567
BbvI GCAGC 3 cut(s) 40, 94, 973
BccI CCATC 6 cut(s) 235, 354, 485, 693, 750, 957
BceAI ACGGC 1 cut(s) 844
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 7 cut(s) 6, 19, 197, 696, 743, 944, 1122
BfaI CTAG 4 cut(s) 408, 449, 699, 1201
BfmI CTRYAG 2 cut(s) 420, 724
BfuAI ACCTGC 1 cut(s) 1034
BisI GCNGC 3 cut(s) 54, 108, 962
BlsI GCNGC 3 cut(s) 55, 109, 963
Bme1390I CCNGG 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 1068, 1159
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 2 cut(s) 335, 1018
Bpu14I TTCGAA 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 73, 517
Bsc4I CCNNNNNNNGG 4 cut(s) 352, 620, 647, 665
Bse1I ACTGG 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 1010
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 73, 517
BseGI GGATG 2 cut(s) 442, 685
BseLI CCNNNNNNNGG 4 cut(s) 352, 620, 647, 665
BseMI GCAATG 1 cut(s) 1010
BseMII CTCAG 2 cut(s) 606, 1008
BseNI ACTGG 1 cut(s) 458
BseXI GCAGC 3 cut(s) 40, 94, 973
BseYI CCCAGC 1 cut(s) 1121
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 1 cut(s) 545
BsiHKCI CYCGRG 1 cut(s) 539
BslI CCNNNNNNNGG 4 cut(s) 352, 620, 647, 665
BsmAI GTCTC 7 cut(s) 6, 19, 197, 696, 743, 944, 1122
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 539
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 567
Bsp1407I TGTACA 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 517
BspACI CCGC 3 cut(s) 397, 536, 831
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 2 cut(s) 607, 1009
BspLI GGNNCC 1 cut(s) 395
BspMI ACCTGC 1 cut(s) 1034
BspQI GCTCTTC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 1010
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 73, 517
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 73, 517
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 3 cut(s) 381, 518, 1137
BstACI GRCGYC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 885
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 3 cut(s) 696, 851, 900
BstDEI CTNAG 5 cut(s) 114, 207, 380, 615, 1017
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 2 cut(s) 442, 685
BstHHI GCGC 1 cut(s) 924
BstMAI GTCTC 7 cut(s) 6, 19, 197, 696, 743, 944, 1122
BstMWI GCNNNNNNNGC 3 cut(s) 571, 1078, 1178
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 2 cut(s) 779, 983
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 2 cut(s) 420, 724
BstV1I GCAGC 3 cut(s) 40, 94, 973
BsuRI GGCC 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 517
BtsCI GGATG 2 cut(s) 442, 685
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 66, 213, 369
BveI ACCTGC 1 cut(s) 1034
Cac8I GCNNGC 3 cut(s) 696, 851, 900
CfoI GCGC 1 cut(s) 924
CseI GACGC 1 cut(s) 76
Csp6I GTAC 4 cut(s) 272, 673, 834, 991
CviAII CATG 6 cut(s) 104, 460, 518, 676, 776, 980
CviQI GTAC 4 cut(s) 272, 673, 834, 991
DdeI CTNAG 5 cut(s) 114, 207, 380, 615, 1017
Eam1104I CTCTTC 3 cut(s) 381, 518, 1137
EarI CTCTTC 3 cut(s) 381, 518, 1137
Eco130I CCWWGG 2 cut(s) 73, 517
Eco24I GRGCYC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 913
EcoT14I CCWWGG 2 cut(s) 73, 517
EcoT22I ATGCAT 2 cut(s) 985, 1183
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 2 cut(s) 73, 517
FaeI CATG 6 cut(s) 107, 463, 521, 679, 779, 983
FatI CATG 6 cut(s) 103, 459, 517, 675, 775, 979
FauNDI CATATG 1 cut(s) 1183
Fnu4HI GCNGC 3 cut(s) 54, 108, 962
FokI GGATG 2 cut(s) 449, 672
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 3 cut(s) 54, 108, 962
FspBI CTAG 4 cut(s) 408, 449, 699, 1201
GlaI GCGC 1 cut(s) 923
GluI GCNGC 3 cut(s) 54, 108, 962
GsaI CCCAGC 1 cut(s) 1125
GsuI CTGGAG 2 cut(s) 335, 1018
HaeIII GGCC 1 cut(s) 545
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 924
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 107, 463, 521, 679, 779, 983
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 2 cut(s) 404, 632
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 626
Hpy188I TCNGA 5 cut(s) 130, 318, 490, 844, 1100
Hpy188III TCNNGA 3 cut(s) 408, 501, 614
Hpy8I GTNNAC 1 cut(s) 626
HpyAV CCTTC 3 cut(s) 77, 405, 1103
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 2 cut(s) 748, 884
HpyCH4V TGCA 8 cut(s) 304, 386, 459, 532, 849, 983, 1081, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 571, 1078, 1178
HpyF3I CTNAG 5 cut(s) 114, 207, 380, 615, 1017
HpySE526I ACGT 2 cut(s) 748, 884
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 107, 463, 521, 679, 779, 983
HspAI GCGC 1 cut(s) 922
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 399, 895
Lsp1109I GCAGC 3 cut(s) 40, 94, 973
LweI GCATC 2 cut(s) 1068, 1159
MaeI CTAG 4 cut(s) 408, 449, 699, 1201
MaeII ACGT 2 cut(s) 748, 884
MaeIII GTNAC 1 cut(s) 1147
MbiI CCGCTC 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 567
MluCI AATT 6 cut(s) 480, 504, 869, 877, 905, 1154
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 9 cut(s) 52, 253, 327, 351, 521, 535, 993, 1033, 1138
Mph1103I ATGCAT 2 cut(s) 985, 1183
MroXI GAANNNNTTC 1 cut(s) 586
MseI TTAA 4 cut(s) 474, 720, 1023, 1034
MslI CAYNNNNRTG 3 cut(s) 522, 747, 844
MspA1I CMGCKG 2 cut(s) 729, 996
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 571, 1078, 1178
NcoI CCATGG 1 cut(s) 517
NdeI CATATG 1 cut(s) 1183
NlaIII CATG 6 cut(s) 107, 463, 521, 679, 779, 983
NlaIV GGNNCC 1 cut(s) 395
NsiI ATGCAT 2 cut(s) 985, 1183
NspI RCATGY 2 cut(s) 779, 983
NspV TTCGAA 1 cut(s) 96
PaeR7I CTCGAG 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 1 cut(s) 1183
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 1 cut(s) 632
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 3 cut(s) 55, 109, 963
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
Ppu21I YACGTR 1 cut(s) 885
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 1121
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 539
PvuII CAGCTG 2 cut(s) 729, 996
RsaI GTAC 4 cut(s) 273, 674, 835, 992
RsaNI GTAC 4 cut(s) 272, 673, 834, 991
RseI CAYNNNNRTG 3 cut(s) 522, 747, 844
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 4 cut(s) 474, 720, 1023, 1034
SatI GCNGC 3 cut(s) 54, 108, 962
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 567
SfaNI GCATC 2 cut(s) 1068, 1159
SfcI CTRYAG 2 cut(s) 420, 724
Sfr274I CTCGAG 1 cut(s) 539
SfuI TTCGAA 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 539
SmiMI CAYNNNNRTG 3 cut(s) 522, 747, 844
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 6 cut(s) 480, 504, 869, 877, 905, 1154
SsiI CCGC 3 cut(s) 397, 536, 831
SspI AATATT 2 cut(s) 586, 810
SspMI CTAG 4 cut(s) 408, 449, 699, 1201
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 2 cut(s) 73, 517
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 2 cut(s) 751, 887
TaqI TCGA 4 cut(s) 96, 540, 909, 976
TasI AATT 6 cut(s) 480, 504, 869, 877, 905, 1154
TatI WGTACW 2 cut(s) 271, 672
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 4 cut(s) 474, 720, 1023, 1034
Tru9I TTAA 4 cut(s) 474, 720, 1023, 1034
TscAI CASTG 3 cut(s) 73, 220, 376
TseI GCWGC 3 cut(s) 53, 107, 961
TspDTI ATGAA 6 cut(s) 165, 189, 234, 692, 1049, 1155
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 3 cut(s) 73, 220, 376
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 4 cut(s) 504, 869, 905, 1154
XbaI TCTAGA 1 cut(s) 407
XceI RCATGY 2 cut(s) 779, 983
XhoI CTCGAG 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 4 cut(s) 408, 449, 699, 1201
Zsp2I ATGCAT 2 cut(s) 985, 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.