Rorug05G0211500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012214
Physical Location & Seq
Forward (+)
21702572 .. 21703537
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0211500.1

Sequence Viewer

Length: 486 bp
ATGTACAACCTCGTGCACCCTGTGATTTCCGGTTTGATTAAGATTTTTACATCAGGATTCCGGAGGAAGATGATCTGGAATTTTGTTGGTCTTTTCGGCTTCTTTCGAGGAAAAGAAGACACAGCCGGAGATCCTGGACCAGAAGAGCCGGAGAAGATCCTTGAGCGCCCTCAATCTCCTGTGGAACCGCAAACAGGCAGCGACGAAGTAAAACCAAAACGTGTGTTTTGTTTGATCTGTAAAGGGAATGGCGACCACGAAACTATAAATTGCCCGGACAAATCAGAGGGATATGTAACCCTTTGTAGGATTTGTGATGACGGTCCATGTGAAAATGAGGATGATCCAGACCACAAGGAAGAACATTATGAATATCTCATGCTTTGTGACTGTTGTGGAGCTATCGGTAGACACTGGGAAGATACCTGCTCTAGGAATTGCAGCGATAACGATTGCGACTTTGATCCTCCTTCTTGGCTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.33

Weight (kDa)

4.64

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 434
AccI GTMKAC 1 cut(s) 409
AccIII TCCGGA 1 cut(s) 60
AciI CCGC 1 cut(s) 188
AclWI GGATC 4 cut(s) 125, 151, 338, 458
AcsI RAATTY 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 194, 306, 432
AflIII ACRYGT 1 cut(s) 220
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
Alw21I GWGCWC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 4 cut(s) 125, 151, 338, 458
Aor13HI TCCGGA 1 cut(s) 60
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 198, 441
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 137, 323
AsuC2I CCSGG 1 cut(s) 275
AvaII GGWCC 2 cut(s) 137, 323
BaeGI GKGCMC 1 cut(s) 18
BauI CACGAG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 210, 453
BciT130I CCWGG 1 cut(s) 135
BcnI CCSGG 1 cut(s) 275
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 434
BisI GCNGC 2 cut(s) 199, 442
BlsI GCNGC 2 cut(s) 200, 443
Bme1390I CCNGG 2 cut(s) 135, 275
Bme18I GGWCC 2 cut(s) 137, 323
BmgT120I GGNCC 2 cut(s) 137, 323
BmiI GGNNCC 2 cut(s) 186, 479
BmrFI CCNGG 2 cut(s) 135, 275
BmrI ACTGGG 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 275
BsaWI WCCGGW 2 cut(s) 29, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 306, 432
Bse1I ACTGG 1 cut(s) 419
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 3 cut(s) 194, 306, 432
BseNI ACTGG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 2 cut(s) 210, 453
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 5 cut(s) 30, 61, 126, 149, 275
BslI CCNNNNNNNGG 3 cut(s) 194, 306, 432
Bsp1286I GDGCHC 1 cut(s) 18
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 6 cut(s) 72, 130, 156, 234, 343, 463
BspACI CCGC 1 cut(s) 188
BspEI TCCGGA 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 186, 479
BspMI ACCTGC 1 cut(s) 434
BspPI GGATC 4 cut(s) 125, 151, 338, 458
BspQI GCTCTTC 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 419
BssMI GATC 6 cut(s) 72, 130, 156, 234, 343, 463
BssSI CACGAG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 323, 392
Bst6I CTCTTC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 3
BstENI CCTNNNNNAGG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 6 cut(s) 75, 133, 159, 237, 346, 466
BstMBI GATC 6 cut(s) 72, 130, 156, 234, 343, 463
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 133, 273
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 210, 453
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 130, 156
BstYI RGATCY 2 cut(s) 130, 156
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 434
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 137, 323
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 327, 379
CviJI RGCY 5 cut(s) 99, 125, 148, 401, 478
CviKI_1 RGCY 5 cut(s) 99, 125, 148, 401, 478
CviQI GTAC 1 cut(s) 4
DpnI GATC 6 cut(s) 74, 132, 158, 236, 345, 465
DpnII GATC 6 cut(s) 72, 130, 156, 234, 343, 463
DraIII CACNNNGTG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 137, 323
EcoNI CCTNNNNNAGG 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 2 cut(s) 330, 382
FaiI YATR 5 cut(s) 266, 294, 328, 369, 380
FatI CATG 2 cut(s) 326, 378
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 199, 442
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 199, 442
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 167
GluI GCNGC 2 cut(s) 199, 442
HaeII RGCGCY 1 cut(s) 169
HapII CCGG 5 cut(s) 30, 61, 126, 149, 275
HhaI GCGC 1 cut(s) 168
Hin1II CATG 2 cut(s) 330, 382
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 1 cut(s) 57
HpaII CCGG 5 cut(s) 30, 61, 126, 149, 275
Hpy166II GTNNAC 2 cut(s) 16, 410
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 4 cut(s) 54, 61, 76, 347
Hpy8I GTNNAC 2 cut(s) 16, 410
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 480
HpyCH4III ACNGT 2 cut(s) 323, 392
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 16, 441
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 2 cut(s) 330, 382
HspAI GCGC 1 cut(s) 166
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 6 cut(s) 72, 130, 156, 234, 343, 463
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 398, 483
Lsp1109I GCAGC 2 cut(s) 210, 453
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 295, 386
MalI GATC 6 cut(s) 74, 132, 158, 236, 345, 465
MboI GATC 6 cut(s) 72, 130, 156, 234, 343, 463
MboII GAAGA 6 cut(s) 79, 128, 155, 166, 371, 431
MflI RGATCY 2 cut(s) 130, 156
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 3 cut(s) 79, 268, 436
MnlI CCTC 7 cut(s) 20, 57, 101, 180, 280, 331, 477
MroI TCCGGA 1 cut(s) 60
MseI TTAA 1 cut(s) 39
MspI CCGG 5 cut(s) 30, 61, 126, 149, 275
MspR9I CCNGG 2 cut(s) 135, 275
MvaI CCWGG 1 cut(s) 135
NciI CCSGG 1 cut(s) 275
NdeII GATC 6 cut(s) 72, 130, 156, 234, 343, 463
NlaIII CATG 2 cut(s) 330, 382
NlaIV GGNNCC 2 cut(s) 186, 479
NmuCI GTSAC 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 2 cut(s) 200, 443
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 186, 479
PspPI GGNCC 2 cut(s) 137, 323
PsuI RGATCY 2 cut(s) 130, 156
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 199, 442
Sau3AI GATC 6 cut(s) 72, 130, 156, 234, 343, 463
Sau96I GGNCC 2 cut(s) 137, 323
ScrFI CCNGG 2 cut(s) 135, 275
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 12, 223, 403, 428
SinI GGWCC 2 cut(s) 137, 323
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 3 cut(s) 79, 268, 436
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 133, 273
TaaI ACNGT 2 cut(s) 323, 392
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 106
TasI AATT 3 cut(s) 79, 268, 436
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 198, 441
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 1 cut(s) 419
VneI GTGCAC 1 cut(s) 14
VpaK11BI GGWCC 2 cut(s) 137, 323
XagI CCTNNNNNAGG 1 cut(s) 430
XapI RAATTY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 409
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.