RLG00000034252

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012214
Physical Location & Seq
Forward (+)
39433072 .. 39436219
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034252

Sequence Viewer

Length: 1134 bp
ATGGGAAAGCGAGACAAGAAACAAAGACACCAACACAGAACCTCCCACAGAGCTGCCTTTCACTATACTGAAGAAGGTGTCAGCTTTGAAAGTCATGCTGCTTCCAAGTTCAGTCTTTCTGAAGAAGAAGAAGAAGAAGAAGTAGAAAAAAAAGACGAAGACGAAGCAGAGATTGAGGAAACAGAGGAAACTGATAAATACCCATCAAAAGATATGCCCTCAAAGTTTCTTCTTTATCAACAATCTGTGCAGTCGCCGAAAGGAGACATAAGCTATTTGCAGAAGTTCTTTTTGATGTATGTGGGTGGGAGGCAACCTCTCCATCTCCAAGAAGATTTTTGTGGCACTGCTCTTCTTAGTGCAGAATGGCTCCGCACGGACTCTAGAAGGACTGCTGTAGGGTTGGATTTGGACCTTGAAGCGCTAGAATGGTGCATGGAGAACAACATAAATAAGATAGGGTCTGATGGGTATTCCAGAATATCGCTCTTCCATGGGAATGTCTTGCAACCTCTTGAGGCCAAGCTAATTGAGTTTGAGCCCCAGGAGCTGATAAGAAACGTTTCACTCTCTGAAAACAAGGATGTTTCTGAGAGTGGTGGACTTGAAGGGGGTTCTTCTTCTCCACATAATGAGAAGTACATGAGGAACCATCCATTGCCTGCTAGAGACATAGTGTGTGCTTTTAACTACAGCTGTTGCTGTCTTCATCGACGTGCTGAACTGGTTTTGTATTTCAAGCATGTTCTTGATGTCTTGTCAAAGAAAGGTGGAATATTTGTAATGGATTTATATGGTGGTACATCATCAGAGTGCAAGCTAAGGCTTCAAAGGAAATTTGCCAATTTCACGTATTTTTGGGAGCAAGCTGAATTTGATATCATTGAGCGCAAAACAAGGATTAGTCTCCATTTCCATCTCAAAAAGCAGCAGAAGAAACTTCGACATGCATTTTCATACAGCTGGAGGCTGTGGTCATTGCCTGAGATTAAGGACTGCTTAGAAGAGGCAGCAACAAGATGCTTGGAATGCATATGTCGTAGCTGTTGCTTAGCTTCATGTTATCAAGAGCCAACTAATGCAACGGTTGCAGAGACTGGGGAGGGACATTTTGCAACTTTGCTCTGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.55

Weight (kDa)

5.73

Isoelectric Point (pI)

68.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 373
AclI AACGTT 1 cut(s) 561
AcsI RAATTY 2 cut(s) 836, 872
AcuI CTGAAG 2 cut(s) 90, 141
AfaI GTAC 2 cut(s) 641, 802
AfeI AGCGCT 1 cut(s) 423
AgsI TTSAA 5 cut(s) 89, 419, 608, 739, 830
AjiI CACGTC 1 cut(s) 716
AjnI CCWGG 1 cut(s) 543
Alw26I GTCTC 5 cut(s) 6, 258, 663, 911, 1088
AlwNI CAGNNNCTG 2 cut(s) 550, 1097
Aor51HI AGCGCT 1 cut(s) 423
AoxI GGCC 2 cut(s) 519, 1127
ApeKI GCWGC 4 cut(s) 53, 98, 928, 1010
ApoI RAATTY 2 cut(s) 836, 872
Asp700I GAANNNNTTC 1 cut(s) 562
AspLEI GCGC 2 cut(s) 424, 891
AspS9I GGNCC 1 cut(s) 412
AvaII GGWCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 2 cut(s) 165, 698
BbvI GCAGC 4 cut(s) 40, 85, 940, 1022
BccI CCATC 5 cut(s) 211, 330, 461, 660, 924
BciT130I CCWGG 1 cut(s) 545
BcoDI GTCTC 5 cut(s) 6, 258, 663, 911, 1088
BfaI CTAG 3 cut(s) 384, 425, 666
BfmI CTRYAG 2 cut(s) 396, 691
BfoI RGCGCY 1 cut(s) 425
BisI GCNGC 4 cut(s) 54, 99, 929, 1011
BlpI GCTNAGC 1 cut(s) 1051
BlsI GCNGC 4 cut(s) 55, 100, 930, 1012
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 2 cut(s) 371, 650
BmrFI CCNGG 1 cut(s) 545
BmrI ACTGGG 1 cut(s) 1107
BmsI GCATC 1 cut(s) 1010
BmuI ACTGGG 1 cut(s) 1107
BpiI GAAGAC 2 cut(s) 165, 698
BplI GAGNNNNNCTC 2 cut(s) 301, 333
BpmI CTGGAG 1 cut(s) 985
Bpu10I CCTNAGC 1 cut(s) 821
Bpu1102I GCTNAGC 1 cut(s) 1051
BpuEI CTTGAG 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 493, 543
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 2 cut(s) 729, 1102
Bse3DI GCAATG 2 cut(s) 656, 977
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 493, 543
BseGI GGATG 2 cut(s) 589, 652
BseMI GCAATG 2 cut(s) 656, 977
BseMII CTCAG 2 cut(s) 582, 975
BseNI ACTGG 2 cut(s) 729, 1102
BseXI GCAGC 4 cut(s) 40, 85, 940, 1022
BsgI GTGCAG 2 cut(s) 269, 381
BshFI GGCC 2 cut(s) 521, 1129
BslFI GGGAC 1 cut(s) 1119
BsmAI GTCTC 5 cut(s) 6, 258, 663, 911, 1088
BsmFI GGGAC 1 cut(s) 1119
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 2 cut(s) 521, 1129
Bsp1286I GDGCHC 1 cut(s) 543
Bsp1720I GCTNAGC 1 cut(s) 1051
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 1 cut(s) 373
BspANI GGCC 2 cut(s) 521, 1129
BspCNI CTCAG 2 cut(s) 583, 976
BspLI GGNNCC 2 cut(s) 371, 650
BspQI GCTCTTC 2 cut(s) 357, 494
BsrDI GCAATG 2 cut(s) 656, 977
BsrI ACTGG 2 cut(s) 729, 1102
BssECI CCNNGG 2 cut(s) 493, 543
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 1087
Bst6I CTCTTC 3 cut(s) 357, 494, 999
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstBAI YACGTR 1 cut(s) 852
BstC8I GCNNGC 3 cut(s) 663, 818, 867
BstDEI CTNAG 6 cut(s) 356, 591, 821, 984, 1000, 1051
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 589, 652
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 2 cut(s) 424, 891
BstMAI GTCTC 5 cut(s) 6, 258, 663, 911, 1088
BstMWI GCNNNNNNNGC 3 cut(s) 547, 1029, 1088
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 2 cut(s) 746, 950
BstSCI CCNGG 1 cut(s) 543
BstSFI CTRYAG 2 cut(s) 396, 691
BstV1I GCAGC 4 cut(s) 40, 85, 940, 1022
BstV2I GAAGAC 2 cut(s) 165, 698
BsuRI GGCC 2 cut(s) 521, 1129
BtgI CCRYGG 1 cut(s) 493
BtrI CACGTC 1 cut(s) 716
BtsCI GGATG 2 cut(s) 589, 652
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 3 cut(s) 663, 818, 867
CaiI CAGNNNCTG 2 cut(s) 550, 1097
CfoI GCGC 2 cut(s) 424, 891
Cfr13I GGNCC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 640, 801
CviAII CATG 7 cut(s) 95, 436, 494, 643, 743, 947, 1059
CviQI GTAC 2 cut(s) 640, 801
DdeI CTNAG 6 cut(s) 356, 591, 821, 984, 1000, 1051
Eam1104I CTCTTC 3 cut(s) 357, 494, 999
EarI CTCTTC 3 cut(s) 357, 494, 999
Eco130I CCWWGG 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 412
Eco47III AGCGCT 1 cut(s) 423
Eco57I CTGAAG 2 cut(s) 90, 141
EcoRII CCWGG 1 cut(s) 543
EcoRV GATATC 1 cut(s) 880
EcoT14I CCWWGG 1 cut(s) 493
EcoT22I ATGCAT 2 cut(s) 952, 1034
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 7 cut(s) 98, 439, 497, 646, 746, 950, 1062
FalI AAGNNNNNCTT 2 cut(s) 983, 1015
FaqI GGGAC 1 cut(s) 1119
FatI CATG 7 cut(s) 94, 435, 493, 642, 742, 946, 1058
FauNDI CATATG 1 cut(s) 1034
Fnu4HI GCNGC 4 cut(s) 54, 99, 929, 1011
FokI GGATG 2 cut(s) 596, 639
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 4 cut(s) 54, 99, 929, 1011
FspBI CTAG 3 cut(s) 384, 425, 666
GlaI GCGC 2 cut(s) 423, 890
GluI GCNGC 4 cut(s) 54, 99, 929, 1011
GsuI CTGGAG 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 2 cut(s) 521, 1129
HhaI GCGC 2 cut(s) 424, 891
Hin1II CATG 7 cut(s) 98, 439, 497, 646, 746, 950, 1062
Hin6I GCGC 2 cut(s) 422, 889
HinP1I GCGC 2 cut(s) 422, 889
HinfI GANTC 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 602
Hpy188I TCNGA 5 cut(s) 121, 466, 574, 592, 811
Hpy188III TCNNGA 5 cut(s) 384, 477, 515, 749, 1067
Hpy8I GTNNAC 1 cut(s) 602
Hpy99I CGWCG 1 cut(s) 717
HpyAV CCTTC 3 cut(s) 68, 381, 602
HpyCH4III ACNGT 1 cut(s) 1087
HpyCH4IV ACGT 3 cut(s) 561, 715, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 547, 1029, 1088
HpyF3I CTNAG 6 cut(s) 356, 591, 821, 984, 1000, 1051
HpySE526I ACGT 3 cut(s) 561, 715, 851
Hsp92II CATG 7 cut(s) 98, 439, 497, 646, 746, 950, 1062
HspAI GCGC 2 cut(s) 422, 889
LguI GCTCTTC 2 cut(s) 357, 494
LmnI GCTCC 3 cut(s) 375, 547, 862
LpnPI CCDG 9 cut(s) 490, 530, 557, 675, 710, 949, 996, 1083, 1111
Lsp1109I GCAGC 4 cut(s) 40, 85, 940, 1022
LweI GCATC 1 cut(s) 1010
MaeI CTAG 3 cut(s) 384, 425, 666
MaeII ACGT 3 cut(s) 561, 715, 851
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 4 cut(s) 528, 836, 844, 872
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 384
Mph1103I ATGCAT 2 cut(s) 952, 1034
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 2 cut(s) 687, 990
MslI CAYNNNNRTG 3 cut(s) 498, 714, 811
MspA1I CMGCKG 2 cut(s) 696, 963
MspR9I CCNGG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 1034
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 547, 1029, 1088
NcoI CCATGG 1 cut(s) 493
NdeI CATATG 1 cut(s) 1034
NlaIII CATG 7 cut(s) 98, 439, 497, 646, 746, 950, 1062
NlaIV GGNNCC 2 cut(s) 371, 650
NsiI ATGCAT 2 cut(s) 952, 1034
NspI RCATGY 2 cut(s) 746, 950
PciSI GCTCTTC 2 cut(s) 357, 494
PctI GAATGC 1 cut(s) 1034
PdmI GAANNNNTTC 1 cut(s) 562
PkrI GCNGC 4 cut(s) 55, 100, 930, 1012
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 852
Psp1406I AACGTT 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 2 cut(s) 371, 650
PspPI GGNCC 1 cut(s) 412
PstNI CAGNNNCTG 2 cut(s) 550, 1097
PvuII CAGCTG 2 cut(s) 696, 963
RsaI GTAC 2 cut(s) 641, 802
RsaNI GTAC 2 cut(s) 640, 801
RseI CAYNNNNRTG 3 cut(s) 498, 714, 811
SapI GCTCTTC 2 cut(s) 357, 494
SaqAI TTAA 2 cut(s) 687, 990
SatI GCNGC 4 cut(s) 54, 99, 929, 1011
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 1 cut(s) 1010
SfcI CTRYAG 2 cut(s) 396, 691
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 3 cut(s) 498, 714, 811
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 4 cut(s) 528, 836, 844, 872
SsiI CCGC 1 cut(s) 373
SspI AATATT 1 cut(s) 777
SspMI CTAG 3 cut(s) 384, 425, 666
StyD4I CCNGG 1 cut(s) 543
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 1087
TaiI ACGT 3 cut(s) 564, 718, 854
TaqI TCGA 2 cut(s) 712, 943
TasI AATT 4 cut(s) 528, 836, 844, 872
TatI WGTACW 1 cut(s) 639
Tru1I TTAA 2 cut(s) 687, 990
Tru9I TTAA 2 cut(s) 687, 990
TscAI CASTG 1 cut(s) 352
TseI GCWGC 4 cut(s) 53, 98, 928, 1010
TspDTI ATGAA 3 cut(s) 698, 945, 1047
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 2 cut(s) 836, 872
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 2 cut(s) 746, 950
XmnI GAANNNNTTC 1 cut(s) 562
XspI CTAG 3 cut(s) 384, 425, 666
Zsp2I ATGCAT 2 cut(s) 952, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.